RNA id: TCONS_00023774


Basic Information

Item Value
RNA id TCONS_00023774
length 535
RNA type processed_transcript
GC content 0.48
exon number 3
gene id XLOC_012050
representative True

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 20653773 ~ 20666616 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGGCCCAGTTTCTGTCTTTTGGATCCCCTCAATCTGTTGGGGTGTTGTATCCCGAGTGGCTCAGTGCCTTTCAGGAGGGAAAAGGCATGACAGCTTGGGTCGGTTCCATGGTGTCTGGGGTTGCGCTCATCACTAGCCCGGTGTGCAGTGCCTGTGTGGATAATTTCGGTGCTCGACCGGTAACCATCTTCAGTGGTGTGATGGTGGCTGGAGGGCTGATGCTGAGTGCGTTTGCTCCGAATATCTCTTTCCTCATCTTCTCCTATGGCATTGTTGTAGGCATGGGCTGTGGACTTGTCTATGCTGCCACACTGACCATAACCTGCCAGTACTTTGACAAGAGGCGAGGCCTGGCGCTGGGCATCGTCACTACAGGTACACATTTTAAACTCATTAACTGCACATTATGGTATGCAACGGACTAAAAAGTAGCTAATAGGGATGTCGCTATTTATCGTCTATGATACaatcttaaatgttgtttcaaCAATATGCCAACTGACATTATCGAGTTTGCCATTcactttgcaaaaat

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0015718 monocarboxylic acid transport biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function
GO:0008028 monocarboxylic acid transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1364 Predicted to enable monocarboxylic acid transmembrane transporter activity. Predicted to be involved in monocarboxylic acid transport. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of plasma membrane. Is expressed in adenohypophysis; brain; and pars anterior. Orthologous to human SLC16A9 (solute carrier family 16 member 9).

Ensembl:

ensembl_id ENSDART00000140742

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024886 lncRNA downstream 47987 20610476 ~ 20611884 (-) False XLOC_012049
TCONS_00024885 lncRNA downstream 48150 20610476 ~ 20611721 (-) False XLOC_012049
TCONS_00024884 lncRNA downstream 48153 20610476 ~ 20611718 (-) False XLOC_012049
TCONS_00024887 lncRNA downstream 48228 20610822 ~ 20611643 (-) True XLOC_012049
TCONS_00024883 lncRNA downstream 48260 20610476 ~ 20611611 (-) False XLOC_012049
TCONS_00024888 lncRNA upstream 4472 20670398 ~ 20673891 (-) True XLOC_012051
TCONS_00023782 lncRNA upstream 113105 20779031 ~ 20782016 (-) False XLOC_012053
TCONS_00024889 lncRNA upstream 234664 20900590 ~ 20902585 (-) False XLOC_012055
TCONS_00024891 lncRNA upstream 234664 20900590 ~ 20923528 (-) False XLOC_012055
TCONS_00024890 lncRNA upstream 234664 20900590 ~ 20923528 (-) False XLOC_012055
TCONS_00023772 mRNA downstream 100910 20522081 ~ 20558961 (-) True XLOC_012048
TCONS_00023771 mRNA downstream 229694 20321764 ~ 20430177 (-) True XLOC_012047
TCONS_00023770 mRNA downstream 265305 20321323 ~ 20394566 (-) False XLOC_012047
TCONS_00023769 mRNA downstream 372283 20248224 ~ 20287588 (-) True XLOC_012046
TCONS_00023768 mRNA downstream 372341 20248177 ~ 20287530 (-) False XLOC_012046
TCONS_00023775 mRNA upstream 8037 20673963 ~ 20695998 (-) True XLOC_012052
TCONS_00023776 mRNA upstream 35656 20701582 ~ 20849906 (-) False XLOC_012053
TCONS_00023777 mRNA upstream 36089 20702015 ~ 20711735 (-) False XLOC_012053
TCONS_00023779 mRNA upstream 38608 20704534 ~ 20849879 (-) False XLOC_012053
TCONS_00023780 mRNA upstream 38608 20704534 ~ 20897250 (-) False XLOC_012053
TCONS_00023754 other downstream 515955 20122026 ~ 20143916 (-) True XLOC_012040
TCONS_00023750 other downstream 759014 19900754 ~ 19900857 (-) True XLOC_012037
TCONS_00023731 other downstream 2309026 18350726 ~ 18350845 (-) True XLOC_012025
TCONS_00023730 other downstream 2375808 18283949 ~ 18284063 (-) True XLOC_012024
TCONS_00023728 other downstream 2780162 17879594 ~ 17879709 (-) True XLOC_012020
TCONS_00023778 other upstream 37253 20703179 ~ 20703297 (-) True XLOC_012054
TCONS_00023786 other upstream 300909 20966835 ~ 20978952 (-) True XLOC_012057
TCONS_00023793 other upstream 464335 21130261 ~ 21130377 (-) True XLOC_012061
TCONS_00023801 other upstream 613947 21279873 ~ 21280185 (-) True XLOC_012064
TCONS_00023811 other upstream 1167798 21833724 ~ 21859164 (-) False XLOC_012072

Expression Profile

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