RNA id: TCONS_00023768


Basic Information

Item Value
RNA id TCONS_00023768
length 2432
RNA type mRNA
GC content 0.48
exon number 15
gene id XLOC_012046
representative False

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 20248177 ~ 20287588 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCTTTCGCTGTGCGCTCACGTCCCTGATACTTGCTACACAGAGTGTTGGGGCTCTAAAACCAAGAAACTGCGACTTGAGGGAAAATATTCTTGCAGGCATCTGATGTGCTGTTAAGTTGTCCTTTGTGAAGCTGATGCGGAGAGTTATGTTTTCTGCTGCAGTTTGGGAAATAAACTTAAGCTGAGGAAGAGGAAAgcAGAAGGTTGTGTTTATGTATGAGTGAAACTGAGATTGTTAAGATGAACACGATCGATGAAGAGGGTGGTTTTCGAACCCGCCCCCCATCCAGTCTAAATGTGAAGAAGTTCTACAGCGAAAACGCAGAAGAGGTCCAGTCCCCGGAGTCTTTGAGGGGCTGCGCTTTGTCACCCGACCTGAGGCAGGACTTCAACATGATGGAGCAGAGAAAGAGAGTCACACAGATTCTGCAGAGTCCAGATTTTAAGGAGGAGCTGGAGTGTATGGTAAAGGAGCAGAGCTCTAAAGGCAGCAACTCTAGTGGTTTACTCGGTCACATCGCACACATCATCAGCAACACACTCAGCAACACTGGAGTGCACAGTCCCAGCAATACAGGGTCAATTAGTCCGGTGAATGATCTGTGTGGCATGGAGTGGTTTAACTGTTCCAAAGCTGAAAGGCAGGGCCGCTGTAAACTGGCCTGCTTGTACCGTCTGCTGGACCTCTACGGACACACACACCTCCCAAATACATATATAACCCTTCGTATCAACAAAGAACAGGATCATATTCTTATTCTCCCCAAAGGATTGTCATTCTCCGAGGCCACAGCAGCCAGTCTGGTGAAGGTAAATCTGATTGGTGAGGTGGTTGATCAAGGGGCGACTGCACTACCTGTGGATGTTTTGGGATTTAAACCACATTCTGCCATATATTCTGCCAGACCAGATGCCAAATGTGTTGTACATACATACACGCCAAATACAGCTGCAGTCTCTTCTATGAAATGTGGAATCTTGCCCATTACCCATGAGGCTTTGCTGCTGGGGGAGGTGTCTTATTTTAGCTACCATGGTGATTTAGCTGACGAGCAGGAGAAGATGGAGCTTCAGAAAGCTTTGGGTCCCACTGCCAAGGTTTTAGTCTTGAGGAATCAAGGTTTACTGGCGTTTGGAGAGACGATAGAGGAAGCTTTTCACTATCTCTATCACTGCCACCAAGCCTGTGAGATACAGGTTAGCGCTGTGCTATCTGCAGGTGGCGTCAACAACCTGTGTGTGTTAGACAGAGCGAGTCTGAAAACAGCTCCGGCCAAAAATCCCGGTGGACAAATGCCAGATGGACAGATCAGATGGAGGGTTGGAGAAGCAGAATTTGAGTCGCTTATGAGGATGTTAGATAACTTAGGTTACAGAACAGGTTACACTTACCGCCATCCCATAGTTAAAGAGAAGCCTCGACACCATAATGACGTGGAGATCCCAGCAACCGTCACTGGGATGGCACTAGAGGAAAAAGACACCTTTCCACATAGTCCGCTGCACATCCTGGGACAGAAACGGGACAGAGAGAGGATACGATGGCTGAATTCACCCAACAGCTACTTAAAGGTTGATGTACCAGAGGAGTCCTTCAACGGGACCTGCAGCCCCCGCACCAAAACTACGtggctgAAGTCAGAAGAATCAGGAAGCTGCAAGGACACTCCAATTAAGATTGAGGACCCCAACCAGTTTGTCCCGCTTAATACTAATCCCACTGAAGTACTGGAAAAAAgaaataagATTCGAGAACAGAACAGAGCAGATCTGATGACAGCTGGACCCAAGTCTCAACTGCTGGCAGACATTGTTATTGACAAGCCTCCTGGACCAGCATTCATCTATGAGGATGAGGAGAAAACAGCTGCTCTACCACCCAACCCTTTTGACCAATCAGAAGCAGATCTACAGGCATACACACAAACTGTGGAGAACAAGAACAGCCAATCAGCTCTTCAGTCAGAAGCTGATGAGGAGTTCACAGATGGAGAAATGACCACCTATGATGGCTCCACCATATCACTGTCCATCTCGCCGCTCATGAGTCCTGAAAGAGGAGACTGTCTCTCAGCTCTTCTGCAGAGCAGTGATGGCGATGACCTGACGCAGGATGAAGATCTCACTCTACAGGTCACTGAGCTCAGCCTCACTAAAGAGATGCAGGTCTCCATAACCACCACCGTCGCCAACAACATTTCAGTCACCAGTTCTTCTGAAAGCCAGCAGAAGTCAcccaaaaagaagaaaaagaaatttCGCACTCCGTCCTTCCTGCGCATGTCCAAAAAGAAAGAGAGGAGAGAAAAGGAGAAGACAACAGAGACAGAGAAAAAGCCAGAAGAAATGCAGATAGAGGAAGAAAAGGAAACCAAGAAGGACTGAGTTAACGATTCCAACTGTGCAGgggattgtgggtaatgtagtttaag

Function

GO:

id name namespace
GO:0051016 barbed-end actin filament capping biological_process
GO:0051017 actin filament bundle assembly biological_process
GO:0005856 cytoskeleton cellular_component
GO:0044853 plasma membrane raft cellular_component
GO:0014069 postsynaptic density cellular_component
GO:0030507 spectrin binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0051015 actin filament binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080718-6 Predicted to enable actin filament binding activity. Predicted to be involved in barbed-end actin filament capping. Predicted to be active in cytoskeleton; plasma membrane; and postsynaptic density. Is expressed in intestine. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 50. Orthologous to human ADD3 (adducin 3).

Ensembl:

ensembl_id ENSDART00000078703

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00023767 lncRNA downstream 11966 20235147 ~ 20236211 (-) True XLOC_012045
TCONS_00024881 lncRNA downstream 163740 20083812 ~ 20084437 (-) True XLOC_012039
TCONS_00024880 lncRNA downstream 276133 19967166 ~ 19972044 (-) True XLOC_012038
TCONS_00024879 lncRNA downstream 849992 19230734 ~ 19398185 (-) False XLOC_012030
TCONS_00024882 lncRNA upstream 322946 20610476 ~ 20611503 (-) False XLOC_012049
TCONS_00024883 lncRNA upstream 322946 20610476 ~ 20611611 (-) False XLOC_012049
TCONS_00024884 lncRNA upstream 322946 20610476 ~ 20611718 (-) False XLOC_012049
TCONS_00024885 lncRNA upstream 322946 20610476 ~ 20611721 (-) False XLOC_012049
TCONS_00024886 lncRNA upstream 322946 20610476 ~ 20611884 (-) False XLOC_012049
TCONS_00023765 mRNA downstream 11868 20231801 ~ 20236309 (-) False XLOC_012045
TCONS_00023766 mRNA downstream 11949 20232255 ~ 20236228 (-) False XLOC_012045
TCONS_00023764 mRNA downstream 18365 20219231 ~ 20229812 (-) True XLOC_012044
TCONS_00023763 mRNA downstream 19567 20219153 ~ 20228610 (-) False XLOC_012044
TCONS_00023760 mRNA downstream 29808 20214503 ~ 20218369 (-) False XLOC_012043
TCONS_00023770 mRNA upstream 33793 20321323 ~ 20394566 (-) False XLOC_012047
TCONS_00023771 mRNA upstream 34234 20321764 ~ 20430177 (-) True XLOC_012047
TCONS_00023772 mRNA upstream 234551 20522081 ~ 20558961 (-) True XLOC_012048
TCONS_00023773 mRNA upstream 366243 20653773 ~ 20666616 (-) False XLOC_012050
TCONS_00023775 mRNA upstream 386433 20673963 ~ 20695998 (-) True XLOC_012052
TCONS_00023754 other downstream 104261 20122026 ~ 20143916 (-) True XLOC_012040
TCONS_00023750 other downstream 347320 19900754 ~ 19900857 (-) True XLOC_012037
TCONS_00023731 other downstream 1897332 18350726 ~ 18350845 (-) True XLOC_012025
TCONS_00023730 other downstream 1964114 18283949 ~ 18284063 (-) True XLOC_012024
TCONS_00023728 other downstream 2368468 17879594 ~ 17879709 (-) True XLOC_012020
TCONS_00023774 other upstream 372341 20659871 ~ 20665926 (-) True XLOC_012050
TCONS_00023778 other upstream 415649 20703179 ~ 20703297 (-) True XLOC_012054
TCONS_00023786 other upstream 679305 20966835 ~ 20978952 (-) True XLOC_012057
TCONS_00023793 other upstream 842731 21130261 ~ 21130377 (-) True XLOC_012061
TCONS_00023801 other upstream 992343 21279873 ~ 21280185 (-) True XLOC_012064

Expression Profile

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