RNA id: TCONS_00023763


Basic Information

Item Value
RNA id TCONS_00023763
length 3298
RNA type mRNA
GC content 0.38
exon number 11
gene id XLOC_012044
representative False

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 20219153 ~ 20229812 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTAAGAGACAAGCAAAggtatcttaatttttttttaatagtaggCTAACTCTTATGAGAAATCTATATTACTCTGGAATCCAGTTTGCTATAGAAAGTTTGCTTCTTTCAAACATTGTGcaaattatttcaatttaaatgactTAGAACAATTGTTTCTGTTCCCGGCAGAGATGTTGGTCTTGCTCGAGCACACTTCGAGAAACAGCCGCCTGCAAACCTGCGCAAGTCAAACTTCTTTCACTTTGTTTTGGCTTTATATGACAGTCAGGGTCAGTCTGTGGAAATAGAGCAAACTGCATTTGTGGATTTTGTTGAAAAAGACAAGGTGAggagaaatgtggaaaaaatcaAACATATTTTAAGAATGTCAAAATAAGAAAAGCATATATTGATTTGTCCATTTATGATTTAGGAACCAGTgagtgaaaaaacaaacaatggaaTCCATTACAAACTTCAGTTACTCTACAATAATGGTGAGCACTTTATATATTACCTACGTTTTTTAAGAAACATAAATGATGTTCAGTGCTGATCTTTCGCTTTTTAGGTGTCAGAACAGAGCAAGATCTCTACATCCGTTTGATAGACTCTGTGACCAAACAGGCAATTGTGTTTGAAGGTCAGGATAAAAACCCTGAGATGTGCCGTGTTCTTCTCACGCATGAGACGATGTGCAGGTAACTTGTATCTCTACAACATGCTGAAATAAAACGGTCTTTCATAtatattgtgtttgttttagcATATTTTACACTTGATGAGGAAGTAATTGTGGATATGTATATGTACATTTTTACAGCCGATGTTGTGATAAAAAAAGCTGTGGAAACAGAAATGAAACACCATCAGACCCTGTCATTATCGACAGATTCTTCTTGAAGTTTTTTCTCAAATGTAATCAAAATTGCCTGAAGAACGCAGGAAACCCACGAGACACACGCCGTTTCCAGGTACACACATAATTTCTATGTAAACATGATGGATGCTGATGTACTGTTATATTTTTCtgtgcattttttttgtaaaagtaacTGTGCGTTGCAGGTGCTGGTCTCCACCACAGCCTCTGTTAAGGCCCACATTCTAGCCATTTCGGATAACATATTTGTCCACAACAATTCAAAGCATGGAAGAAGAGCAAGACGATTTGAATTGATTGAAGCTGAGATCCCCTGCATTAAGGCCATCAGTCCGAGTGAAGGCTGGACTTCAGGTGGAGCGTCAGTGATTATTATTGGAGATCAGTTCTTCAGTGGTCTACAGGTGGTTTTCGGAACAATGCTGGTCTGGAGTGAGgtGATCACACCACATGCGATTCGAGTGCAGACTCCACCTCGTCACATCCCTGGGGTTGTAGAGGTCACTTTGTCCTACAAATCCAAACAGTTCTGCAGGGGAGCTCCGGGACGCTTCGTTTACACTGCTTTAAATGAGCCAACTATTGACTACGGGTTCCAGCGGCTGCAGAAGGTCATTCCTCACCATCCTGGCGATGTGGAAAGACTGCCAAAAGAGGTCTTGCTGAAGAGAGCAGCTGATCTCATAGAGACTTTTTATGGAGCGCCTCAGAACAACCAGGAAATTATTCTGAAGCGTGCATCTGACATAGCCGAGGCATTAAACAGCATCCCTCGAAACCCATCGCACACAAATCCACATGGGATGATGGCTGTAAACTCCTATGATGGTCAGTTAAGCTTGAACACAGAGGTTTCCCAGCAGGATGCAGAACGAGCGAGTTTCAACAGGAGTTCAAACACTGGCTTTATTGAAGGCAGCACATCCCAACAGTCTGAATTCAACAACACCAACATGTGCATGAATGgactcacacattcacactcaaacacacacctgtccggacacacacaaacacacacacgccccGCTGTGCCAAATTTCTCTATGGCTGCCACACAAGTGTTCAAAGACAATCCCACAGTGGACACACAGCACTATGTAGTGAAGCAGAAAAGTGCCTTTGCTCCAGTTCTGAAGCTGCACTAACAAAACCAAATTTCAAGTCTTTCTATCTGCATGCATTGCGTGGACTAAACACCAGTCAGACTCTCACGTGGATAAACTGTCAAGATGTAGAAATGAAGAAGTCGTGCTCATTGTGATCAAGATATAACAACTTCTATTTCTTCATTCAATAGTTCTTTCAGTTCAAGcaatataaacatacaaatctatatgtaaaattataaaattgttgCTTCTGCAGCTCTCCATTATTGATGTATTTGTATTGTGTTCAAGCtgtgatttattaatattgtctGTGTATGGTTGTGTGTGTCTAACTGACTAGTACATTTCTATTCTATCACTATTAAATGTTTGGGGTCAATCATTTttcttaaaatgcatttaattgatatacatatttaattgattaatattGCAAACTTTCCATGCAATCAAAATAACTGTAATAGATTAGATTTATaagtataatttataaaataactaaaatagatttaaatCTCTTTTACatcacacgatccttcagaaatcatccaTTTGGTgcttaaaaaacattattattataaaagttgAAATGGCTTCTAGATATTTTTGCGGCAAAGGTAGtatgtttttgacatttttagtcAATTTGTCTTTAAAGTAAAAGAATTAAAtgacaaagtaaaaaataataaaagagttCCCTTAACTTTTGATTCATTGTAACACTGAAAAATTGTGctaaaaataatgacatttatttattaacctaCAACAAAACTTTGCTTTCACAAGTTTTACTTATCTATGAACTTCTATAATCACTGAACCATCTGATGACAATGACACAAAGGATTTATTTTCAAGTGAAGATTGATATCAGTCCATGTCCCACATGCTTCCTGGTTTCCACAAATCTATTCTTCATGTCTCATTAAATTCTCATCGAGCTTGAGTACTGGGTTCAGGGAGGAGGCTCTATTTGTTTTCTTTAAGATACTTCACTGAATTCTCAAATAATCTCTTCGTCATCCATCTGGTTTTACTATGAGGGGGAGACCTCAAAATAAAGGCAAATGCTGGAGATTGTCTGCCATAAGTCTGAGCGCATGAGTGAGTTCTCTGTGTATAATAGAGGCGGCACAACTGTGTAATAATAGTGTCATTGCCACATATAATGTTCATGCGGATGTTCAGCACCCTTCACAAACAGTATGCCAGTGATGAAAATAAAATTTCACACCACTAAACACATTTGTCTTGTCctttatgatatgatatgatatgatgatTTCTGTTAATTTACACTTTTAAATGTTACA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131126-3 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Orthologous to human EBF3 (EBF transcription factor 3).

Ensembl:

ensembl_id ENSDART00000125758

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024881 lncRNA downstream 134716 20083812 ~ 20084437 (-) True XLOC_012039
TCONS_00024880 lncRNA downstream 247109 19967166 ~ 19972044 (-) True XLOC_012038
TCONS_00024879 lncRNA downstream 820968 19230734 ~ 19398185 (-) False XLOC_012030
TCONS_00023767 lncRNA upstream 6537 20235147 ~ 20236211 (-) True XLOC_012045
TCONS_00024882 lncRNA upstream 381866 20610476 ~ 20611503 (-) False XLOC_012049
TCONS_00024883 lncRNA upstream 381866 20610476 ~ 20611611 (-) False XLOC_012049
TCONS_00024884 lncRNA upstream 381866 20610476 ~ 20611718 (-) False XLOC_012049
TCONS_00024885 lncRNA upstream 381866 20610476 ~ 20611721 (-) False XLOC_012049
TCONS_00023758 mRNA downstream 762 20214213 ~ 20218391 (-) False XLOC_012043
TCONS_00023759 mRNA downstream 784 20214326 ~ 20218369 (-) False XLOC_012043
TCONS_00023760 mRNA downstream 784 20214503 ~ 20218369 (-) False XLOC_012043
TCONS_00023761 mRNA downstream 796 20214527 ~ 20218357 (-) False XLOC_012043
TCONS_00023762 mRNA downstream 986 20214564 ~ 20218167 (-) True XLOC_012043
TCONS_00023765 mRNA upstream 3191 20231801 ~ 20236309 (-) False XLOC_012045
TCONS_00023766 mRNA upstream 3645 20232255 ~ 20236228 (-) False XLOC_012045
TCONS_00023768 mRNA upstream 19567 20248177 ~ 20287530 (-) False XLOC_012046
TCONS_00023769 mRNA upstream 19614 20248224 ~ 20287588 (-) True XLOC_012046
TCONS_00023770 mRNA upstream 92713 20321323 ~ 20394566 (-) False XLOC_012047
TCONS_00023754 other downstream 75237 20122026 ~ 20143916 (-) True XLOC_012040
TCONS_00023750 other downstream 318296 19900754 ~ 19900857 (-) True XLOC_012037
TCONS_00023731 other downstream 1868308 18350726 ~ 18350845 (-) True XLOC_012025
TCONS_00023730 other downstream 1935090 18283949 ~ 18284063 (-) True XLOC_012024
TCONS_00023728 other downstream 2339444 17879594 ~ 17879709 (-) True XLOC_012020
TCONS_00023774 other upstream 431261 20659871 ~ 20665926 (-) True XLOC_012050
TCONS_00023778 other upstream 474569 20703179 ~ 20703297 (-) True XLOC_012054
TCONS_00023786 other upstream 738225 20966835 ~ 20978952 (-) True XLOC_012057
TCONS_00023793 other upstream 901651 21130261 ~ 21130377 (-) True XLOC_012061
TCONS_00023801 other upstream 1051263 21279873 ~ 21280185 (-) True XLOC_012064

Expression Profile

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