RNA id: TCONS_00023760


Basic Information

Item Value
RNA id TCONS_00023760
length 800
RNA type mRNA
GC content 0.47
exon number 5
gene id XLOC_012043
representative False

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 20214213 ~ 20218391 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGGCAAGTTTTCCAAGCAGGAAGTTACATCGGGAACAGGTTTTCAGAAACATTCAACAATTCTCTGCTTTAATTATTCGCTGTAAACGTTTTGTGATGTCTGCCAGCGGTGCTTGTGTGCTGTGTGCTGTGACTCTCACCTCTCCGGTGGGGGAAATCCTGCTGCGCGGCTGTGAGAAGGGAGTTCACACCATTGACATCAAACTGAACACAGACAAGGAGGAGAGTGTCTCCTGTTGTAGTGTCCACCCTGTTGTCCTGTCAGAGATGAGCTCTGAGCTGCAGCGTTGTGTTGACTGGCTTCAATGCTACTTCATGAACCCAGAGTCCATCAGTGCTCTTCCTCTGCCTGCCTTACATCATCCGCTAATGCAGAGCGACTCTTTTAAAGCACAGGTGCTGAAAACTCTGTTGAAGGAAGTGGGAGTTGGTAAAACAGTCTCCTACAAGCAGCTTGCTGAAATGATTGGGAACCCAAACGCTGTGCGAGCAGTGGGCTCAGCCATGAAGCAAAACCCTGTCCCGTTAATAGTGCCATGTCACCGAGTGCTGCTCAGTTCAGGACACACTGGATCATACATGGGAGGAAAGGGAGACGATATTAAAGTCTGGTTGCTCACTCATGAGAGAAAAGCAGTGGAGCTTAATCCATCGCAGAGTGGAAAATCCATCTGATGGTCCACACAAACTGTTGCACACAAAATGCTGCCTCCATGCTTGTTCACAGCTTTTGTTTTTGAGATTTGATTTCTGTATTGATTGGACCATTTCTTTTTAACTTAATAGATAAAATTGTTACC

Function

GO:

id name namespace
GO:0006281 DNA repair biological_process
GO:0005634 nucleus cellular_component
GO:0003908 methylated-DNA-[protein]-cysteine S-methyltransferase activity molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-120614-1 Predicted to enable methylated-DNA-[protein]-cysteine S-methyltransferase activity. Predicted to be involved in DNA repair. Predicted to act upstream of or within cellular response to DNA damage stimulus and methylation. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in several diseases, including carcinoma (multiple); endocrine gland cancer (multiple); granulosa cell tumor; nervous system cancer (multiple); and urinary bladder cancer. Orthologous to human MGMT (O-6-methylguanine-DNA methyltransferase).

Ensembl:

ensembl_id ENSDART00000156540

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024881 lncRNA downstream 130066 20083812 ~ 20084437 (-) True XLOC_012039
TCONS_00024880 lncRNA downstream 242459 19967166 ~ 19972044 (-) True XLOC_012038
TCONS_00024879 lncRNA downstream 816318 19230734 ~ 19398185 (-) False XLOC_012030
TCONS_00023767 lncRNA upstream 16778 20235147 ~ 20236211 (-) True XLOC_012045
TCONS_00024882 lncRNA upstream 392107 20610476 ~ 20611503 (-) False XLOC_012049
TCONS_00024883 lncRNA upstream 392107 20610476 ~ 20611611 (-) False XLOC_012049
TCONS_00024884 lncRNA upstream 392107 20610476 ~ 20611718 (-) False XLOC_012049
TCONS_00024885 lncRNA upstream 392107 20610476 ~ 20611721 (-) False XLOC_012049
TCONS_00023757 mRNA downstream 11778 20188704 ~ 20202725 (-) True XLOC_012042
TCONS_00023755 mRNA downstream 47267 20144626 ~ 20167236 (-) False XLOC_012041
TCONS_00023756 mRNA downstream 47297 20147403 ~ 20167206 (-) True XLOC_012041
TCONS_00023753 mRNA downstream 70557 20122019 ~ 20143946 (-) False XLOC_012040
TCONS_00023752 mRNA downstream 96358 20014236 ~ 20118145 (-) False XLOC_012039
TCONS_00023763 mRNA upstream 784 20219153 ~ 20228610 (-) False XLOC_012044
TCONS_00023764 mRNA upstream 862 20219231 ~ 20229812 (-) True XLOC_012044
TCONS_00023765 mRNA upstream 13432 20231801 ~ 20236309 (-) False XLOC_012045
TCONS_00023766 mRNA upstream 13886 20232255 ~ 20236228 (-) False XLOC_012045
TCONS_00023768 mRNA upstream 29808 20248177 ~ 20287530 (-) False XLOC_012046
TCONS_00023754 other downstream 70587 20122026 ~ 20143916 (-) True XLOC_012040
TCONS_00023750 other downstream 313646 19900754 ~ 19900857 (-) True XLOC_012037
TCONS_00023731 other downstream 1863658 18350726 ~ 18350845 (-) True XLOC_012025
TCONS_00023730 other downstream 1930440 18283949 ~ 18284063 (-) True XLOC_012024
TCONS_00023728 other downstream 2334794 17879594 ~ 17879709 (-) True XLOC_012020
TCONS_00023774 other upstream 441502 20659871 ~ 20665926 (-) True XLOC_012050
TCONS_00023778 other upstream 484810 20703179 ~ 20703297 (-) True XLOC_012054
TCONS_00023786 other upstream 748466 20966835 ~ 20978952 (-) True XLOC_012057
TCONS_00023793 other upstream 911892 21130261 ~ 21130377 (-) True XLOC_012061
TCONS_00023801 other upstream 1061504 21279873 ~ 21280185 (-) True XLOC_012064

Expression Profile

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