RNA id: TCONS_00024176


Basic Information

Item Value
RNA id TCONS_00024176
length 1899
RNA type mRNA
GC content 0.52
exon number 2
gene id XLOC_012272
representative True

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 37792617 ~ 37795865 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAAATGCAGCGCGGCCACGGAGGAGCAAGACAGAGGGGGTTTCTTTTAGGGCAACACAAGTTTACACAACCAGAACTAGCTTGTTACAGTTTGAAGTTTCTGCTTTTTATTCCGCTGTTTATTTATCAACGATTGGAAGATGACCACAGCCGTGGTGTCGCCTTTCTTCGACTTCAGCGAAATGATCAACAACAAGAACAAAATGCTAAACTACAATAATAACATCCTCAGTTCTCCGCACCCTGTCTCCGTCCCTTGCACTGGGACTAGTCTGTCCATCTCTAACCCCACTGGTTGCCTGCTGGACAGGAAGGCTGTGGGGACACCCTCTACTGGTGGGGTTTACCAGCGCCGGCACTCTGTAACTTCGGCTAACACCAAACTCAACCAAAACCAGTTTTTGAACATTGCTAAGGCAGATCCATCCCTGCTTGGTTCAGGGACAGGAACCACCGGCAGCAGCAACAAAGAGAACCGACTCCGAGACCGCTCTTTCTCAGAGACAGGGGATCGCCTGCTACAGAAGTGTTCGGGCCCTGGAGGCCCCAACAGCCAGGTCAACTCGAGCCGCTACAAGACAGAGTTATGCAGGCCATTCGAGGAGAATGGAGCTTGCAAGTACGGTGACAAGTGCCAGTTTGCCCATGGCATTCATGAGTTGCGTAGCTTGAGTCGCCATCCCAAGTACAAGACTGAGCTTTGCCGCACATTCCACACCATTGGCTTCTGCCCTTATGGCCCGCGCTGCCACTTCATCCACAATGCAGAAGAGCGACGAGGGCCTCCTCCAACCCCATCCCCCCTTTCAGCATCCAACAAGATGGAGAGGCCAAGGCTGCAACACAGCTACAGCTTCGCGGGGTTCCCCAGCTCTGGAGGCTTGAGGGACAGCCCCACTTCAGTCACCCCACCACCTATATTTTCCCCCGATGAGCTGCCCGAGTGGCCTAGCAGCAACCCCTTCACGTATTCCAGCCAGGAGCTGGCCAACTTCTTCAGCCCCAGCCTGGGTAATGCACCTTTGTCCTGCTCTGACCCTTCCTCCCAGGCGCCACCTTCGCCAACATCAACCCCTTTCTACTTCAGGGCAATGTCAGAGTCTCCAAACCTCTACGAGTCTCCATCCAGTCAGCCAGACTCACTTTCTGACCAAGAGGGCTACCAGAGCAGCTCAAGTGGAAGTCTAAGTGGATCTGAATCTCCCGTCCTTGACACCACTCGCCGACTGCCCATCTTCAGCAGGCTTTCCATCTCCGATGACTAAAGCGCACTGAGCCAGACCCCGTCCCCCTTTCCACTGCATGCAGCAGTCTTGAGAGGATGAGATGCTAGCACTCCCTCCACCTCTTGCCATTTCTCTGGCCCCCTAGAAGCCGTACAGTTCCTTCCTTGTATTACTTCCGCTCTGAAACCGATGCAGTGAATTAAGGGATCTTTCTCTTTTTGAATACTCTTTTTAACCAGAACAAGCTAAAACTGTCCCGGCCTCAAGACCCTTCTGTTTTCCGGGCCACATCATGTCGAGCCCCTGCTATGTTCCTGGTGTGACTGTGCCAAACTACACAGAGTAGGAAGTGGATTAGCAAAATGCTAATCGTGAGAGGTATGAGACCGTTGTGCCAGGTGCCACAGCTGTAGTCAAGTGTAGCGGAGCTGGTGGCATGGTTAAGGGAGAACCCTGCGCCCTTCCTTCCCCCTCACAAATCGCCACTCTTCTCAAGGACACTCTTTCATAACTAACTAAAGTTCACAAGTGTCATGCTTAGACCTTTAACAACTGTCTTTGTAGACCGGCTTAAAGCGAAAAACAGGAAAAGATGTGAAAAAAAGACAAGTGCCTGGGGGTCGAGTGTTGGGGTGAATGGACCACTGtttctttttatctttaatatatatatt

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-9860 Predicted to enable metal ion binding activity. Predicted to be located in cytoplasm. Is expressed in several structures, including anterior neural keel; immature eye; nervous system; splanchnocranium; and tail bud. Orthologous to human ZFP36L1 (ZFP36 ring finger protein like 1).

Ensembl:

ensembl_id ENSDART00000025853

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024955 lncRNA downstream 21277 37768641 ~ 37771340 (-) True XLOC_012271
TCONS_00024173 lncRNA downstream 397170 37387979 ~ 37395447 (-) True XLOC_012268
TCONS_00024954 lncRNA downstream 427260 37363024 ~ 37365357 (-) True XLOC_012267
TCONS_00024167 lncRNA downstream 493236 37291455 ~ 37299381 (-) True XLOC_012264
TCONS_00024141 lncRNA downstream 1116740 36673484 ~ 36675877 (-) True XLOC_012253
TCONS_00024956 lncRNA upstream 227278 38023143 ~ 38025926 (-) False XLOC_012273
TCONS_00024957 lncRNA upstream 227278 38023143 ~ 38026611 (-) True XLOC_012273
TCONS_00024958 lncRNA upstream 916761 38712626 ~ 38714935 (-) True XLOC_012276
TCONS_00024183 lncRNA upstream 958869 38754734 ~ 38760657 (-) False XLOC_012277
TCONS_00024959 lncRNA upstream 1704707 39500572 ~ 39547487 (-) True XLOC_012282
TCONS_00024175 mRNA downstream 317928 37445525 ~ 37474689 (-) True XLOC_012270
TCONS_00024172 mRNA downstream 397121 37385811 ~ 37395496 (-) False XLOC_012268
TCONS_00024171 mRNA downstream 397157 37385811 ~ 37395460 (-) False XLOC_012268
TCONS_00024170 mRNA downstream 479695 37310663 ~ 37312922 (-) True XLOC_012266
TCONS_00024166 mRNA downstream 493223 37287852 ~ 37299394 (-) False XLOC_012264
TCONS_00024178 mRNA upstream 440604 38236469 ~ 38244117 (-) False XLOC_012274
TCONS_00024177 mRNA upstream 440604 38236469 ~ 38244117 (-) False XLOC_012274
TCONS_00024179 mRNA upstream 447078 38242943 ~ 38291065 (-) True XLOC_012274
TCONS_00024180 mRNA upstream 597324 38393189 ~ 38442362 (-) True XLOC_012275
TCONS_00024181 mRNA upstream 942975 38738840 ~ 38778826 (-) False XLOC_012277
TCONS_00024174 other downstream 402500 37390003 ~ 37390117 (-) True XLOC_012269
TCONS_00024169 other downstream 480807 37310662 ~ 37311810 (-) False XLOC_012266
TCONS_00024168 other downstream 483171 37309329 ~ 37309446 (-) True XLOC_012265
TCONS_00024159 other downstream 842062 36950438 ~ 36950555 (-) True XLOC_012260
TCONS_00024140 other downstream 1157428 36635072 ~ 36635189 (-) True XLOC_012252
TCONS_00024188 other upstream 1191431 38987296 ~ 38987415 (-) True XLOC_012280
TCONS_00024189 other upstream 1353702 39149567 ~ 39149683 (-) True XLOC_012281
TCONS_00024190 other upstream 1735950 39531815 ~ 39531929 (-) True XLOC_012283
TCONS_00024191 other upstream 1845816 39641681 ~ 39641798 (-) True XLOC_012284
TCONS_00024224 other upstream 5029426 42825291 ~ 42842863 (-) True XLOC_012313

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000062_01098365_01102108.mRNA True 2817 mRNA 0.47 3 CI01000062 1098365 ~ 1103732 (+)
rainbow trout (Oncorhynchus mykiss) TU391594 True 2829 lncRNA 0.46 2 NC_048568.1 34538515 ~ 34541396 (-)