RNA id: TCONS_00024328


Basic Information

Item Value
RNA id TCONS_00024328
length 876
RNA type mRNA
GC content 0.42
exon number 7
gene id XLOC_012394
representative True

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 48906344 ~ 48915427 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atttgttttgattttcccCAGACAGTCCCTTTCACTGAGATTATACCAAATGGTCTTCACACAGGAGAGATGATTATTATACAGGGGTGTGTTCAAAATAATGCTGACAGGTTTCAGTTTGATTTGACATGTGGCTGCAGTACAAAGCCACGGGCGGATGTGGCATTTCACTTTAATCCACGATTCAGCAGTTCTCCACGTATCGTGTGTAACTTCTTGCATCATGAAAATTGGGGAAAAGAAGAAAACGTGGACCTCATGCCATTTAAACAAGGAGCGTCATTTGAGACGATCATCATGGTACTTTGCGATGTTTTCAAAGTAGCAGTAAATGGTGTTCATATTTTGGAATATAAACACAGGATTCCTCTTGAGATGGTTAACACGTTTTCAGTATCTGGAAACGTAGAAGTGCATGCCATTGGCTTTATCCCTGACTCAGTAAGCAAATTTTCCAACTCAAGTGACCTAAGCATACCCTACAAGGGAAGTTTACTTAGAGGAGTCATTCCTGGACAACAAATAACAATCAAAGGGCATATCAGCTTATTCCCTCACAGTTTTACAGTTAATCTGCGGTGCGGCCAATCAAACAACATTGCTCTGCACATTTACTCACACATCAAATCTGGCAAGCTTATCAGGAACTCTCTTCTCAGCCAGTCATGGGGTCCAGAGGAACGTGAACTGCCGTACTTTCCCTTTTCAGCTGGAAACTACTTTGAGATAATCATCCTATGTCAGCTTCATCAGTTTAAGATAGCAGTTAATGGATCCCATCTCCTGGATTACAACCACAGAGTGCAGGACTTAAGCTCCATTGATCAACTGGAGATTCTGGGTGACATGGAACTGCAACATGTTCAGTTGTGGTGA

Function

GO:

id name namespace
GO:0030246 carbohydrate binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-120727-7 Predicted to enable carbohydrate binding activity. Is expressed in female organism. Orthologous to human LGALS8 (galectin 8).

Ensembl:

ensembl_id ENSDART00000054781

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00025009 lncRNA downstream 298197 48607713 ~ 48608147 (-) True XLOC_012390
TCONS_00025008 lncRNA downstream 298249 48607713 ~ 48608095 (-) False XLOC_012390
TCONS_00024324 lncRNA downstream 330987 48574770 ~ 48575357 (-) True XLOC_012389
TCONS_00024323 lncRNA downstream 402015 48491714 ~ 48504329 (-) True XLOC_012388
TCONS_00024555 lncRNA downstream 403826 48491515 ~ 48502518 (-) False XLOC_012388
TCONS_00025010 lncRNA upstream 1059 48916486 ~ 48917885 (-) False XLOC_012395
TCONS_00025013 lncRNA upstream 1059 48916486 ~ 48918914 (-) False XLOC_012395
TCONS_00025012 lncRNA upstream 1059 48916486 ~ 48918914 (-) False XLOC_012395
TCONS_00025011 lncRNA upstream 1059 48916486 ~ 48918914 (-) True XLOC_012395
TCONS_00024336 lncRNA upstream 411817 49327244 ~ 49329761 (-) False XLOC_012400
TCONS_00024327 mRNA downstream 101185 48745740 ~ 48805159 (-) True XLOC_012393
TCONS_00024326 mRNA downstream 163268 48736160 ~ 48743076 (-) True XLOC_012392
TCONS_00024325 mRNA downstream 200351 48683769 ~ 48705993 (-) True XLOC_012391
TCONS_00024317 mRNA downstream 1601310 47187870 ~ 47305034 (-) False XLOC_012382
TCONS_00024318 mRNA downstream 1685410 47193206 ~ 47220934 (-) True XLOC_012382
TCONS_00024329 mRNA upstream 5372 48920799 ~ 48936123 (-) True XLOC_012396
TCONS_00024330 mRNA upstream 27777 48943204 ~ 48944465 (-) True XLOC_012397
TCONS_00024331 mRNA upstream 304699 49220126 ~ 49280308 (-) False XLOC_012398
TCONS_00024332 mRNA upstream 304710 49220137 ~ 49275690 (-) False XLOC_012398
TCONS_00024333 mRNA upstream 304824 49220251 ~ 49280428 (-) True XLOC_012398
TCONS_00024320 other downstream 743279 48162951 ~ 48163065 (-) True XLOC_012385
TCONS_00024319 other downstream 1395948 47510280 ~ 47510396 (-) True XLOC_012384
TCONS_00024308 other downstream 2086499 46819748 ~ 46819845 (-) True XLOC_012370
TCONS_00024306 other downstream 2166041 46740206 ~ 46740303 (-) True XLOC_012364
TCONS_00024305 other downstream 2236241 46670007 ~ 46670103 (-) True XLOC_012361
TCONS_00024334 other upstream 311777 49227204 ~ 49227319 (-) True XLOC_012399
TCONS_00024342 other upstream 488635 49404062 ~ 49407046 (-) True XLOC_012402
TCONS_00024346 other upstream 535750 49451177 ~ 49451298 (-) True XLOC_012405
TCONS_00024355 other upstream 938980 49854407 ~ 49860935 (-) True XLOC_012412
TCONS_00024357 other upstream 1067731 49983158 ~ 49995353 (-) False XLOC_012413

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000311_00349573_00358751.mRNA True 1445 mRNA 0.38 9 CI01000311 349065 ~ 358751 (-)
tiger barb (Puntius tetrazona) TU277005 False 1784 lncRNA 0.36 7 NW_025048287.1 267322 ~ 330871 (-)