RNA id: TCONS_00025010


Basic Information

Item Value
RNA id TCONS_00025010
length 452
lncRNA type inter_gene
GC content 0.35
exon number 3
gene id XLOC_012395
representative False

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 48916486 ~ 48918914 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGCATAGGCAACTATACACACACTACATTccatatacacacacactacacatatgATACAATCTAAACACACACTATATTCCACATGATACAATTTATAAACACActacacacatgatacaatttACACACACTGCAGTCCATCTACacacacgATACAATCTACATCCCATATACACACACTTCATtccatatacatataatataatctatACACACAGTATActtcatatacatacatacatacatacatacatacataaaatatctaTATACACACTAAATAGTCCCTACGTTTACACTGTAGACATACACTGTCAGAGATGAGCtttgaacccgggtctccagTGTCAGAGTCCGAATGCTTTACCACAGAGCCACAGGAGATTGATGGTGTAGGCAACTATACACACACTACATTCCATATATACACATGAAAcaatctatacat

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00025009 lncRNA downstream 308339 48607713 ~ 48608147 (-) True XLOC_012390
TCONS_00025008 lncRNA downstream 308391 48607713 ~ 48608095 (-) False XLOC_012390
TCONS_00024324 lncRNA downstream 341129 48574770 ~ 48575357 (-) True XLOC_012389
TCONS_00024323 lncRNA downstream 412157 48491714 ~ 48504329 (-) True XLOC_012388
TCONS_00024322 lncRNA downstream 412261 48491131 ~ 48504225 (-) False XLOC_012388
TCONS_00024336 lncRNA upstream 409359 49327244 ~ 49329761 (-) False XLOC_012400
TCONS_00024337 lncRNA upstream 419179 49337064 ~ 49339681 (-) True XLOC_012400
TCONS_00024338 lncRNA upstream 427886 49345771 ~ 49349192 (-) True XLOC_012401
TCONS_00024340 lncRNA upstream 483443 49401328 ~ 49401988 (-) False XLOC_012402
TCONS_00024556 lncRNA upstream 546424 49464309 ~ 49470669 (-) True XLOC_012407
TCONS_00024328 mRNA downstream 1059 48906344 ~ 48915427 (-) True XLOC_012394
TCONS_00024327 mRNA downstream 111327 48745740 ~ 48805159 (-) True XLOC_012393
TCONS_00024326 mRNA downstream 173410 48736160 ~ 48743076 (-) True XLOC_012392
TCONS_00024325 mRNA downstream 210493 48683769 ~ 48705993 (-) True XLOC_012391
TCONS_00024317 mRNA downstream 1611452 47187870 ~ 47305034 (-) False XLOC_012382
TCONS_00024329 mRNA upstream 2914 48920799 ~ 48936123 (-) True XLOC_012396
TCONS_00024330 mRNA upstream 25319 48943204 ~ 48944465 (-) True XLOC_012397
TCONS_00024331 mRNA upstream 302241 49220126 ~ 49280308 (-) False XLOC_012398
TCONS_00024332 mRNA upstream 302252 49220137 ~ 49275690 (-) False XLOC_012398
TCONS_00024333 mRNA upstream 302366 49220251 ~ 49280428 (-) True XLOC_012398
TCONS_00024320 other downstream 753421 48162951 ~ 48163065 (-) True XLOC_012385
TCONS_00024319 other downstream 1406090 47510280 ~ 47510396 (-) True XLOC_012384
TCONS_00024308 other downstream 2096641 46819748 ~ 46819845 (-) True XLOC_012370
TCONS_00024306 other downstream 2176183 46740206 ~ 46740303 (-) True XLOC_012364
TCONS_00024305 other downstream 2246383 46670007 ~ 46670103 (-) True XLOC_012361
TCONS_00024334 other upstream 309319 49227204 ~ 49227319 (-) True XLOC_012399
TCONS_00024342 other upstream 486177 49404062 ~ 49407046 (-) True XLOC_012402
TCONS_00024346 other upstream 533292 49451177 ~ 49451298 (-) True XLOC_012405
TCONS_00024355 other upstream 936522 49854407 ~ 49860935 (-) True XLOC_012412
TCONS_00024357 other upstream 1065273 49983158 ~ 49995353 (-) False XLOC_012413