RNA id: TCONS_00027038


Basic Information

Item Value
RNA id TCONS_00027038
length 2737
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id XLOC_012563
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 5837098 ~ 5839834 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

attaaattatatattaattatatttacaaatttagccttttttttcctcagagtgaagtttatttataaactaatttcgagaggatcacttgcttatgattgatcacagccggacccgcattattcaatttatgattcaccaatcagacgattcctaagccactataaataccctgagttATATAACAGCCGTCTTCGTTTTAAAGAATTCCcttttccacccctactccttctcctttcctagatgggtggcactgtggcccagaggttagcactgttgcctcacagcaagaatgccactTGTTATAGTCCTTACctagccagccgacgtttctgtgcggagtttacacattctccctgtgctcacgtggggttccccggtttcttccaactgtccaaaaacatgcaacttaagttaattgactaatcgaaatcggcaccatagacatgctcctagtaaatagttatctctATAAGAGCAATCACTGTATGTCCATTAGCtcctacagcaggggagttctcaagatctacctgagctcaaactcccctctcgcattgcaaacgggagggagccccaggctcgaggatcttatgagctcagggctctctcccaggacagcatgccaaacaagctttataatcaatcatcagctaagtgtgaactcttgaaattgggGTGAGACATAATCTTGCAATGAATCATATTCGAATTTTGGggaataaagtcagaatttcaaTTATATTTATGTAAGTCAAGATATTTTTGTCTCAAGTCTGGTTTGCATCTTTCAATTTTGATCTCTGGTAAGAGTCATAACTGaaaaataataacactaaaagagaaaaaaaagtataaattttGGGATTTATATGTCCAATTGTAAGctacaaatgacaaaaatatcatttaaaaagtaaGAATTACAAGAAACTCAGACTtgagtttatatttcacaatatttagtttaaaaacgtgTAAGACTGCATTTACAGGAATACTCAAGTCTCAAGATATAAATTTAGTGTGGGGAactctgtgttttttttatcttgcCATTTCAAGTTTTAAACTTGCAAGTGTGAAAACAAAATCAGATCTGGAGTACAGAAATTGGTAAATGACATATAAACTTGCAAATAAATCCGCAGTACTAAAGGAAAAAAGTTAGAATATCGGAAATTAAATTGTGACTACTAATTCAGATTAAATGATTGTCCTGCATGTCATCAACCGGCTTTGTCAGACTTGCGCTTCTGTACATTTAGAATAGTTGTTTTTAccattttgtttataaaaaattgaattaaaactATCATAAAAAATAAGGGCAGTACGTGAGAATTATATCACAGCACTAAAAAAATCCTCTTTAGATAGTTGTAGCTAGTTTTAAGAGGCTTTGACAACCACTCCAGTTTTACCAACCAGGATAATGTTTTGCATACGTTTACAATGTTCATTTGAATATGCGAAGATGCTTTATTTCTGGTATCACagccaattaaaaaaaagtccAGGGTACAATATTAGACACaatatttcaaaaaaataaaataaaaacgtctGAGGtcagttttacttaataaaatcAGTGTTCCTGTATCAGTTACACGCAGTAAACATCGGTGAATTCAGTGAACTGATGAGCTTTgaggccaatcacagtcatttctgttgagcatgtgaacacaaggCCAAATCAGCCCAAGAATAtagttttttacaatattttaacacTGATATGGAAAGATTAAAGTCATTCTGAACCAGATTAATGATTTAAAAGTGTGTTACTCTGCCATTTAATATAAGTGTAAATCCAGCATTTTGTTTATGTGATGATGAGTAATGAATTTGTGtgccaatttttttttagttgtgcATCGTTTATGCAATGAATTTTTACACATTCCCTGGTCATCATCATcctattattattgattattgttGAGATTATCATACAAAACAATGCAGACGGTTCATGCGGCGTAACTCGGATTGAACCAGAGTGGCTTGgcgtaatttatttttattctaaagaGACGTTTCTCGAACACTATGAGCTGTAAAGGGAATTTGTATATGCGCAAAATCCCTCAAGATCACGTTTTGAATCTGAAATGAGACTATTTGCCTTTTATCAGCACATAAATAAGAATGTATCTCATGCTTTTTTTTATACCTTGTTTTGATCGGGTAGAAGAGGGACATCGTTTGCATTAGAATAATTAGGGTTTTTGCATTCTGTGCTATTATTACTACTGCAACAGTATTCGCCTGAcctcaactcttttttttttttttttcagacatgtTTAAAACTCGTAATTCTAGATATTACTTGACTGTAAAGGCTGGGGGACGTCTGCTCTTAAATGACCTTCGTTAACCTCAAATCTATAGCATTAGGGGTTCAACTATTGCATATGCTATCAGaccttttgaaaaaaatgtattggaGGTGATTAGTCGGAAATCATCCCAAAAAAGAAATAGAAATTGTTAACTTTGACTCCAACGTTCAATCTTCCCCCACTTTAGATCTTCAGTGCTGCAGATTTGTGCGAGCGAAAACGGGTTGAAGCGGATTTGTGCAGTGTGAACTTGTTGGAAACGGGGCACAGAAGCAAAGGATATGGAATTGTGTCTGTGATAAATGGTGTAAACAAATATCATTCTGATACTTTCAGGTGTTATGATGTTCTTATGTAAAGTTCTTTTACATAATAAAGTCAT

Function

GO:

id name namespace
GO:0072698 protein localization to microtubule cytoskeleton biological_process
GO:0044380 protein localization to cytoskeleton biological_process

KEGG:

id description
ko03050 Proteasome
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027037 lncRNA upstream 159732 5672914 ~ 5677366 (+) False XLOC_012561
TCONS_00027036 lncRNA upstream 159732 5672914 ~ 5677366 (+) True XLOC_012561
TCONS_00027033 lncRNA upstream 169482 5658327 ~ 5667616 (+) False XLOC_012560
TCONS_00027034 lncRNA upstream 169482 5658481 ~ 5667616 (+) False XLOC_012560
TCONS_00027035 lncRNA upstream 169482 5659340 ~ 5667616 (+) True XLOC_012560
TCONS_00027039 lncRNA downstream 910220 6750054 ~ 6757446 (+) False XLOC_012578
TCONS_00027040 lncRNA downstream 910553 6750387 ~ 6757446 (+) True XLOC_012578
TCONS_00027041 lncRNA downstream 940656 6780490 ~ 6785702 (+) True XLOC_012579
TCONS_00027042 lncRNA downstream 1094190 6934024 ~ 6936237 (+) True XLOC_012581
TCONS_00025180 lncRNA downstream 1160360 7000194 ~ 7012242 (+) False XLOC_012583
TCONS_00025148 mRNA upstream 6684 5813996 ~ 5830414 (+) True XLOC_012562
TCONS_00025147 mRNA upstream 195368 5618368 ~ 5641730 (+) True XLOC_012559
TCONS_00025144 mRNA upstream 280038 5543719 ~ 5557060 (+) False XLOC_012557
TCONS_00025145 mRNA upstream 284889 5547185 ~ 5552209 (+) False XLOC_012557
TCONS_00025146 mRNA upstream 286851 5549672 ~ 5550247 (+) True XLOC_012557
TCONS_00025149 mRNA downstream 11003 5850837 ~ 5859484 (+) True XLOC_012564
TCONS_00025151 mRNA downstream 35434 5875268 ~ 5912156 (+) False XLOC_012565
TCONS_00025150 mRNA downstream 35434 5875268 ~ 5912156 (+) True XLOC_012565
TCONS_00025152 mRNA downstream 77791 5917625 ~ 5969245 (+) True XLOC_012566
TCONS_00025153 mRNA downstream 199307 6039141 ~ 6082443 (+) False XLOC_012567
TCONS_00025142 other upstream 297524 5531522 ~ 5539574 (+) True XLOC_012556
TCONS_00025141 other upstream 297643 5528981 ~ 5539455 (+) False XLOC_012556
TCONS_00025134 other upstream 559107 5277875 ~ 5277991 (+) True XLOC_012549
TCONS_00025129 other upstream 833714 5003269 ~ 5003384 (+) True XLOC_012542
TCONS_00025128 other upstream 1065040 4771136 ~ 4772058 (+) True XLOC_012541
TCONS_00025158 other downstream 460774 6300608 ~ 6305665 (+) False XLOC_012570
TCONS_00025159 other downstream 460782 6300616 ~ 6305606 (+) False XLOC_012570
TCONS_00025160 other downstream 461212 6301046 ~ 6303556 (+) True XLOC_012570
TCONS_00025162 other downstream 556937 6396771 ~ 6400268 (+) True XLOC_012571
TCONS_00025165 other downstream 684942 6524776 ~ 6524890 (+) True XLOC_012573

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU188509 True 228 lncRNA 0.42 1 CI01000032 2789852 ~ 2790079 (+)
tiger barb (Puntius tetrazona) TU188509 True 1644 lncRNA 0.34 2 NC_056716.1 19985741 ~ 19991636 (+)