Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00000210 |
| length | 689 |
| lncRNA type | retained_intron |
| GC content | 0.47 |
| exon number | 4 |
| gene id | XLOC_000113 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007112.7 |
| NCBI id | CM002885.2 |
| chromosome length | 59578282 |
| location | 9153141 ~ 9161843 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006468 | protein phosphorylation | biological_process |
| GO:0032465 | regulation of cytokinesis | biological_process |
| GO:0016310 | phosphorylation | biological_process |
| GO:0060041 | retina development in camera-type eye | biological_process |
| GO:0000278 | mitotic cell cycle | biological_process |
| GO:0005813 | centrosome | cellular_component |
| GO:0000922 | spindle pole | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0016740 | transferase activity | molecular_function |
| GO:0005524 | ATP binding | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| GO:0004672 | protein kinase activity | molecular_function |
| GO:0004674 | protein serine/threonine kinase activity | molecular_function |
| GO:0016301 | kinase activity | molecular_function |
| id | description |
|---|---|
| ko04068 | FoxO signaling pathway |
| ko04110 | Cell cycle |
| ko04114 | Oocyte meiosis |
| ko04914 | Progesterone-mediated oocyte maturation |
| ko01001 | Protein kinases |
| ko03036 | Chromosome and associated proteins |
| id | description |
|---|---|
| ZDB-GENE-021115-7 | Predicted to enable protein serine/threonine kinase activity. Acts upstream of or within mitotic cell cycle and retina development in camera-type eye. Predicted to be located in midbody. Predicted to be active in cytoplasm; microtubule cytoskeleton; and nucleus. Is expressed in several structures, including immature eye; nervous system; neural tube; pharynx; and tail bud. Human ortholog(s) of this gene implicated in urinary bladder cancer. Orthologous to human PLK1 (polo like kinase 1). |
| ensembl_id | ENSDART00000141104 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00003033 | lncRNA | upstream | 1855 | 9154094 ~ 9155521 (+) | False | XLOC_000113 |
| TCONS_00003032 | lncRNA | upstream | 24886 | 9129386 ~ 9132490 (+) | True | XLOC_000111 |
| TCONS_00003031 | lncRNA | upstream | 180954 | 8967479 ~ 8976422 (+) | True | XLOC_000106 |
| TCONS_00003029 | lncRNA | upstream | 191437 | 8950874 ~ 8965939 (+) | False | XLOC_000105 |
| TCONS_00000214 | lncRNA | downstream | 116371 | 9277846 ~ 9285351 (+) | True | XLOC_000116 |
| TCONS_00000220 | lncRNA | downstream | 725480 | 9886955 ~ 9914630 (+) | False | XLOC_000120 |
| TCONS_00002811 | lncRNA | downstream | 785189 | 9946664 ~ 9951873 (+) | True | XLOC_000121 |
| TCONS_00000233 | lncRNA | downstream | 892933 | 10054408 ~ 10055303 (+) | True | XLOC_000126 |
| TCONS_00003034 | lncRNA | downstream | 1300569 | 10462044 ~ 10462882 (+) | True | XLOC_000135 |
| TCONS_00000206 | mRNA | upstream | 11480 | 9144958 ~ 9145896 (+) | True | XLOC_000112 |
| TCONS_00000205 | mRNA | upstream | 65441 | 9086942 ~ 9091935 (+) | True | XLOC_000110 |
| TCONS_00000204 | mRNA | upstream | 65717 | 9082417 ~ 9091659 (+) | False | XLOC_000110 |
| TCONS_00000203 | mRNA | upstream | 82897 | 9071324 ~ 9074479 (+) | True | XLOC_000109 |
| TCONS_00000202 | mRNA | upstream | 113029 | 9004752 ~ 9044347 (+) | True | XLOC_000108 |
| TCONS_00000211 | mRNA | downstream | 37556 | 9199031 ~ 9227204 (+) | False | XLOC_000114 |
| TCONS_00000212 | mRNA | downstream | 37674 | 9199149 ~ 9206616 (+) | True | XLOC_000114 |
| TCONS_00000215 | mRNA | downstream | 128628 | 9290103 ~ 9294115 (+) | True | XLOC_000117 |
| TCONS_00000216 | mRNA | downstream | 395737 | 9557212 ~ 9712302 (+) | False | XLOC_000118 |
| TCONS_00000217 | mRNA | downstream | 547326 | 9708801 ~ 9711245 (+) | True | XLOC_000118 |
| TCONS_00000209 | other | upstream | 1855 | 9154993 ~ 9155521 (+) | False | XLOC_000113 |
| TCONS_00000208 | other | upstream | 2103 | 9154094 ~ 9155273 (+) | False | XLOC_000113 |
| TCONS_00000154 | other | upstream | 2093433 | 7063837 ~ 7063943 (+) | True | XLOC_000081 |
| TCONS_00000149 | other | upstream | 2369572 | 6787690 ~ 6787804 (+) | True | XLOC_000078 |
| TCONS_00000134 | other | upstream | 2971844 | 6182342 ~ 6185532 (+) | False | XLOC_000067 |
| TCONS_00000213 | other | downstream | 57173 | 9218648 ~ 9221616 (+) | True | XLOC_000115 |
| TCONS_00000230 | other | downstream | 890299 | 10051774 ~ 10054771 (+) | False | XLOC_000126 |
| TCONS_00000231 | other | downstream | 890309 | 10051784 ~ 10058057 (+) | False | XLOC_000126 |
| TCONS_00000232 | other | downstream | 892544 | 10054019 ~ 10057808 (+) | False | XLOC_000126 |
| TCONS_00000236 | other | downstream | 921003 | 10082478 ~ 10087525 (+) | False | XLOC_000127 |
