RNA id: TCONS_00025588


Basic Information

Item Value
RNA id TCONS_00025588
length 5158
RNA type mRNA
GC content 0.45
exon number 21
gene id XLOC_012824
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 26428829 ~ 26453729 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

attgtataacagtggtttgatcTCCAgctaacagaaataaaaataagttgctaataatattgaccttaaacatAAGGATTAAAAAACGCATTTATTAGAGCCAAACTAACTGAAACAAGACCTTTTTTTCCATAAGAGAAAATATTACATAATGTCAAAATGCATATCGTTTGGAGCATATCACTCTgcctttgttaattttttaaataattttttgtgtaCTTTGTTGTGTTATTTGGTTCACAAGTTATTAAACTGATATGGTCAGATCTAGACGTGAAGAATATGAAATTAAATGCAATTCTCCCCACAGCCGGTGAGTGGCAACCTTTCTACATGTTAGTATTTGGACGAACACACCATACACCAGAGAGGAAGCAAATGCTCATGTGCTTATATAATCAACTTTAAGACCAAACTGAAAAAATTGAATGAACAAAAATGGCCAGCTAATAAATAACATTACTACAAACCAATTTTATACTGGGTGTCGCGAACAAGCCTGGAGGCGGAAGTGATGTTATTGGCAGATGACCAATGAGAGAGCGAGTTGCAAATACGCGGTAAGCACAAGTTTTCAGCGGTGTTTTGGTGGCGTTGTGTGCTGTGTCGGAATATCAGTTTTTTACTTTTTGTGGAGGTTATTTCGGTGTTTTATAGATTTGATGTTTGCACGACGGCAAAACGTTACGGTGTGACTGTGTTTTGAATagtcaaaaatgtttattttaacggAGCATGTCTgcctttatttgtgtgtttgtgtttgtttgtggggTTGATTGAATGGCAAACATACGGACTTTGAGGATTTATATGTGATATAATTGTACAAAAGATGTCGAGTCTTCCTCAAAACAACCTGAAGGAGCATCTGGAGCGACACAACAATGCTGCCCAGAACAAGCTGTCACTGCTCAAACCAAAGCCTGGGGGGTTTTGCTTCAAAAAGAAGTCTTCGTCAGGCATCTCCAAAGTGGAAGTTCCTCAAAAGGTAACTGGTTCAAGTGTCTTAGCAAACAGGAGTGTCAATATTCCCAGCAACTTTGAAGTAACCAAAAATCCTGTGACGTTTTCGCAAAAGCCAGAGAGAGTGGCACCGAAAGTCAACTTCTTCACTGCGCCCAGCAAACCGAAGACAAATACAGTTAATCCACTAGCAAACCCATTCGCTTTGAACAAAACCCCTCTTGTCCAATCTACCATTAAGGCTTTGCCCAAATCTGCAGCCTTGCCTAAGGACTCAACTAATGATCAAACTGTGGAGCTTAAGCATGACATTTCTCAACTCTCATTCAATGAATGGGATGACTTGGATGATTTTGAAACTCCAGTCAAGAGCAGAGTAGCATCCCCAGTTGCAGGGACCTCTACGAAAAAGCCAAGTGTATCAGACCAGAACACATCCTCAAGCTGCTCTTCTAAGTGTGAGGAGACTAAAGTAAATGAGGAGTCACAAGCTACAGAAACCATAACTGCCCCGAAGGACGTCCTGTCAGCTGCTAATGGAGTCAGCACAGAGACTGCAGAGAGAGAGCCAGAGGACTCACCCATTAAAAAGTCCAAAAGACCTAAGAAATCAGTCCAGCATACAGCATTACTTAGTGACACGGAAGATGAGGAAATAATCCACTGTGTTTCACCGGATACAAACCAGAAGAATTTCAAAAGTGTGGCAGTTGCTGAAAAAGATAAATGGGGTGAGCCAAATGTCATAGACAGTGATGACTGTGAGGAGAACAACCATTATGAAGGTTTTGAGGATTTCATCCCCCCGTCCCCTATTCCAGAAGAGATCAGTCTCTCTGTCTCAGATAAGGAGAAAAGTTCATCTGAGCCTGTTACTCCTGCTAACAAAAAAGAATCTTCTCGATCTGCCTCAGGCCTGCCAGCACCCTTGGATCAATCTGCCAAAGGATTAAAAGGAGCTGATGACGCTCTCTTTAGTGTTATGGAATCTATCTGTTGTCTAGTGGACACTATTCCTGAGCATGAGCTCATAGCGCTGACCTGTGGGACTGAGCTTTTACTGCAGAGAGCACACAGGAAAAGGATTCTTGCTAAAGGTGGGTCATCTAGAACATCTCATTCTGACTCAGTATCAACTCCTGGTTTCCTAAACAGACCTACGTTTGGAGTTACACCCTCCAATCTGACATCCCTGACCCCGGTAACTTCAGGAAAAAGAGAAGGTGTCAAAACTGGCTTTTCTTTTCGCAAATCCATTGCCTCTGTCATGTCTGTGGGTGATGAGAGTGTTTTTGAGGATTCTGACTGCATCATAAATGGAGTCGAAACACCTGGTGGTACCTGGAATCCTAACAGCTCCACTAAAATATCAGCTGGTAGGGATACCTTTAACGGGTCAATCCAAACTTTAAGCAAACCTGAGTCAAAGACAGATAAATGCTACTCAAGGTTGTCCTTCAATGAGTCAAGCAATCAGACTGACCTGTTTTATTCCCCCAAGAGAGTGGATTCAGGCAGCAGAAATGCTGACAGCAGTGTTGAGATCAACATTGCAGGATCCAGCTCTTTACGAACAGGAGCAGAGCCAGTTGATGATTTTTTACTCGATGACTTCGATATTGATGATTTTGATGAGAATGATATTCCAGATTATTATGAAGAACCTCCAAGTGTCTTGGAATCAAGAAATAACTCTGGTGTAAAAACACCATCAGTACAGGAGGGAGGATCATCAAAATCTTTTGAGAGGAAGACATTCACACCACCAGCACCAAAGTCTATTAAAACTCCCAACCCAGAACCTTTGTACAGGAACCCAGCTCATGACCGCTTCAGAGGCTTTAACTTTCCTCATAGCCCAGAGATGATGAAGATCTTCCATAAGAAGTTTGGACTTCATCAGTTCCGCTTTAACCAGCTGGAAGCTATTAATGCCTCGCTGTTAGGAGAAGACACATTTGTATTGATGCCTACAGGTGGTGGTAAAAGTCTCTGTTATCAGCTTCCTGCTTGTGTCTCTGCTGGGGTGACTGTAGTCATTTCTCCTCTACGCTCTTTAATAGTTGACCAAGTACAAAAACTCACCACGTTAGATATCTGTGCAACTAGTTTGTCCGGGGACAAAAAAGATAGTGAGGCTGCCCGAATCTACATGCAGCTGTCCAGGAAAGATCCTGCCATCAAACTGCTTTATGCTACTCCTGAGAAGGTTTGTGCAAGTGGGCGGATGATcagtgcacttcagaatctgtaTGAAAGAGGTCTGCTGGCTCGCTTGGTCATTGATGAGGCCCATTGCGTCAGTCAGTGGGGTCATGATTTCAGACCAGACTACAAGCGCTTGCATGAGCTCAGGCGGATGTTTCCCAATGTTCCTATAATGGCACTGACGGCCACAGCCACTCCTAGAGTTCAGAAAGACATTCTTAACCAATTGGCAATGACACGTCCTCAGGTATTTACTATGAGCTTTAACAGGAACAATCTGAAATACTCAGTTTTGCCTAAGAAGCCCAAGAAGGTTGATGAGGAATGCATTCAGTGGATTAAGAAATATTACCCACGTGACTCTGGGATTGTGTACTGCTTGTCTCGTAATGACTGCGACACTCTGGCTGACAGTCTTCAGAGGGCAGGGATCGCAGCGCTGGCGTATCATGCTGGCCTAAGTGACAGCGACAGGGAATATGTCCAGAACAAGTGGATCAACCAGGACGGCTGTCAGGTTATGTGCGCAACCATAGCATTTGGCATGGGAATCGATAAGCCTGATGTCCGTTATGTGATCCATGCGAGTCTCCCCAAATCAGTGGAGGGTTACTACCAGGAGTCAGGCAGAGCAGGGCGAGATGGAGAGATTTCCCATTGTGTCCTCTTCTATTCCTACAGTGACGTTATCCGCATCAAGAGACTCATTGCTATGGATAAAGATGGCAACCAGCAATCCAAAGCCACCCACATCAATAACCTGCACAGCATGGTGCACTTCTGTGAGAATGTGGCTGAATGCAGAAGGATCCAGCTGCTGGCTTACTTTGGGGAGCACACGTTTAACACGAGCTTCTGTAAAGAGCATCCTGAGGTCATCTGTGACAACTGTGCCAGACCAAACAAATATAAATCCAGAAATGTGACCGATGACGTTAAGAAGATTGCGAGGTTTGTGCAGGACAACTGTGAGAAGGTTGGAAACAGATACGGCAAATCCGCCCAGCAGAACAGGCTCACTCTCAACATGCTGGTTGAAATATTTCTGGGCTCCAAAAGCGCTCGCATCCAGACTGGGATGTTCGGAGTTGGAGCAGCTTATTCCAAACACAACGCTGAGAGGCTCTTTAAGAAGCTGGTGCTGGATAATGTTCTGATGGAGGATCTGTACATCACTAACAGTGGCCAGGCTGTGGCCTATATCTCTGCAGGCCCTAAAGCTATGAGTGTACTGAATGGTTGCATGCAGGTTGAATTTCATGAGACCGAGAGCGCATCCAGCATCAGAAAGCACAGAGCGTCTGTGTGTGAGAAGGTGTCTAAGAGAGAGGAGATGGTGAAAAAGTGTCTGGGTGAACTTAATGATCTATGCAAGAAGTTGGGCAAAGTCTTCGGCATTCATTACTACAATATCTTCTCCACCGCTACACTCAAAAAGATTGCTGaGACTCTCTCGGCTGATCCGGAGGTTCTGCTGCAGATTGATGGTGTAACTGAAGACAAACTGGAGAAATATGGAGCTGAGTTTATTGAACTGCTACAGAAATACTCTGAGTGGCAGCTACCTGctgAAGCACAGGCTGAGAGTTCAGGCTGGATCGACACGACCAGAGGCCATCAAAATGATGAAGACGacaacgatgatgatgatgaaggaggTGGGGATGTCACATCGACATATTTCAGAAGCAACTCTGGACGAGGAGCCAAGAGAAAGCAAGGCTCTTACTCCAGAAAACCCAAACGAAGAAAAGGCTCCAGTGGCCAGAACTCCTCTGCAAAAGGTGGATATAGCAGTAACTGGTCTTCATCacgaggaggaggaagaggaggtggATACAGGGGTGGCAGTCGAGGAGCAGGCCGAGGCTCCAGATCTGCTCCTTCAGGCTCAGCAGCAAAAAGGCCGGGCTTCATGTCGTTACCAACACCGCAGGCTGCTGCTCGTCCATTCCTCAAACCGTCCTTCTCACACCTCTAG

Function

GO:

id name namespace
GO:0006310 DNA recombination biological_process
GO:0044806 G-quadruplex DNA unwinding biological_process
GO:0044237 cellular metabolic process biological_process
GO:0000723 telomere maintenance biological_process
GO:0032508 DNA duplex unwinding biological_process
GO:0000724 double-strand break repair via homologous recombination biological_process
GO:0045950 negative regulation of mitotic recombination biological_process
GO:0006260 DNA replication biological_process
GO:0006268 DNA unwinding involved in DNA replication biological_process
GO:0006281 DNA repair biological_process
GO:0005634 nucleus cellular_component
GO:0005694 chromosome cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides molecular_function
GO:0009378 four-way junction helicase activity molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0043138 3'-5' DNA helicase activity molecular_function
GO:0004386 helicase activity molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
ko03440 Homologous recombination
ko03460 Fanconi anemia pathway
ko01501 beta-Lactam resistance
ko03032 DNA replication proteins
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-070702-5 Predicted to enable 3'-5' DNA helicase activity and four-way junction helicase activity. Acts upstream of or within negative regulation of mitotic recombination. Predicted to be active in chromosome; cytoplasm; and nucleus. Is expressed in several structures, including otic vesicle; pericardial region; presumptive neural retina; retina; and ventricular system. Human ortholog(s) of this gene implicated in Bloom syndrome. Orthologous to human BLM (BLM RecQ like helicase).

Ensembl:

ensembl_id ENSDART00000193226

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00026901 lncRNA upstream 929221 25477794 ~ 25499608 (+) True XLOC_012816
TCONS_00026903 lncRNA upstream 932218 25492659 ~ 25496611 (+) False XLOC_012817
TCONS_00027118 lncRNA upstream 933971 25492733 ~ 25494858 (+) True XLOC_012817
TCONS_00026902 lncRNA upstream 935071 25492411 ~ 25493758 (+) False XLOC_012817
TCONS_00025569 lncRNA upstream 1688108 24737234 ~ 24740721 (+) False XLOC_012812
TCONS_00027119 lncRNA downstream 2982 26456681 ~ 26461427 (+) True XLOC_012825
TCONS_00026904 lncRNA downstream 543877 26997576 ~ 26998589 (+) True XLOC_012832
TCONS_00025618 lncRNA downstream 1117789 27571488 ~ 27614703 (+) False XLOC_012839
TCONS_00025634 lncRNA downstream 2703128 29156827 ~ 29174491 (+) False XLOC_012848
TCONS_00025635 lncRNA downstream 2703150 29156849 ~ 29163114 (+) False XLOC_012848
TCONS_00025585 mRNA upstream 304 26422124 ~ 26428525 (+) False XLOC_012823
TCONS_00025584 mRNA upstream 10192 26337869 ~ 26418637 (+) True XLOC_012822
TCONS_00025582 mRNA upstream 334151 26048128 ~ 26094678 (+) False XLOC_012821
TCONS_00025583 mRNA upstream 334417 26086803 ~ 26094412 (+) True XLOC_012821
TCONS_00025581 mRNA upstream 673911 25752592 ~ 25754918 (+) True XLOC_012820
TCONS_00025592 mRNA downstream 266088 26719787 ~ 26728626 (+) True XLOC_012826
TCONS_00025593 mRNA downstream 290050 26743749 ~ 26752214 (+) False XLOC_012827
TCONS_00025595 mRNA downstream 296817 26750516 ~ 26755230 (+) True XLOC_012827
TCONS_00025596 mRNA downstream 375387 26829086 ~ 26850069 (+) False XLOC_012829
TCONS_00025597 mRNA downstream 375663 26829362 ~ 26849768 (+) True XLOC_012829
TCONS_00025586 other upstream 2192 26425139 ~ 26426637 (+) True XLOC_012823
TCONS_00025570 other upstream 1688108 24737379 ~ 24740721 (+) False XLOC_012812
TCONS_00025571 other upstream 1688655 24737959 ~ 24740174 (+) False XLOC_012812
TCONS_00025567 other upstream 1688782 24737360 ~ 24740047 (+) False XLOC_012812
TCONS_00025566 other upstream 1688933 24737234 ~ 24739896 (+) False XLOC_012812
TCONS_00025594 other downstream 294112 26747811 ~ 26747927 (+) True XLOC_012828
TCONS_00025607 other downstream 742511 27196210 ~ 27196326 (+) True XLOC_012835
TCONS_00025621 other downstream 1283025 27736724 ~ 27736840 (+) True XLOC_012841
TCONS_00025628 other downstream 1850192 28303891 ~ 28304317 (+) True XLOC_012845
TCONS_00025637 other downstream 2721394 29175093 ~ 29175208 (+) True XLOC_012849

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000013_00698283_00710200.mRNA True 5025 mRNA 0.45 21 CI01000013 698283 ~ 711051 (-)