RNA id: TCONS_00025751


Basic Information

Item Value
RNA id TCONS_00025751
length 2599
RNA type mRNA
GC content 0.42
exon number 6
gene id XLOC_012921
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 33685119 ~ 33689274 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGGTTTACTCTGTATATTTACATTTGCCTGTCTTTGAATTGTATCTCTGCAACTTTAATCCTCAAACCAAGTATGTGTTTGCTACAAAGGAGTTTTAAGTTGAATGGAATGTACCAGGATGGAGATTTTATACTCGGAGGCCTATTTGAGGTTCACTTCTTTACAGTGTTTCCAGATCTGACTTTCACAACAAATCCAAAATCACCATACTGTGAAATATTTAATATGGAAGGCTTCCAGCATGCACAGACCATGGCTTTTGCAATAGAAGAGATAAATAAGAATCCAAAACTGCTGCCAAACATCACTCTTGGATATCATCTTTATGACAATTGTGTGATGCTAGGAATGGCATTCCGGGCTGCCATTTCACTTACTAGTGGGACAGAGGAGTCCTTCTTGAACCTAAATTGCAGTGGTCCATCACCAGTGATTGGGATTGTTGGAGATCCAAGTTCAACTCCTTCCATTGCAATTTCCAGTGTTCTGGGGCTGTTTCGAGTGCCTATaGTTAGTCACTACGCCACCTGCTCCTGTTTGAGTAACAGGAAAAAGTACCCCTCTTTCTTTAGAACAATCCCCAGTGATGCATTTCAGGTACGGGCTATAGTCCAagtcttaaaacattttaaatggacCTGGGTTGGTCTCCTCTACAGTGATGATGACTATGGCGTCTATGCTGCTCAGTCTTTTCAGCAAGAAATGCGGCAATTTGGACTTTGTGCTGCATTTTCTGAATTCTTGCCTCATGATAATAATCCCAGAACCATACAGCATATAATGGGGGTTATTCAGGGCTCTACAGCAAAAGCGGTGGTTGTTTTTGCCCCATCATCCTTTCTCATACCTTTGATGAATGAGGTGGTTTTGCAGAATATGACAGGCAGGCAGTGGATTGCAAGTGAAGCTTGGGCCACCTCTCTTGAATCCCATATTCCAAGTTTCCAGCCCTTTTTGAGGGGCACAATAGGAATTGCTATCAGGCGTGGAGAGATTCAAAGACTTCATGACTTTCTACTACGTATTCGCCCTAGTAATGATCCAAAAAATTATATGTTGAGAATCTTCTGGGAGAATATGTTTGGGTGCAGTTTTGGTAAAGGAGATACTGAAGGAGAGCAAGTCATAAAGGTATGTACAGGACAGGAGGATCTGAGCACCACAAATACACCATACACTGACGTCTCAGGACTAAGAGCAGCTTATAATGTATATAAGGCAGTTTATGCACTGGCACATGCCCTTCATGACTTGATGGAGTGTGAGGAGGGGAAAGGACCATTCAGTAAAAACAGCTGTGCTGACAAAACAAACCTAAAACCCTGGCAGGTGGTTCACTACCTACAGAATGTAAACTTCACTACGGGCTTTGGGGATTATGTGTCATTTGATAAGAATGGAGATGCTTTGGCTATTTATGATGTACTAAACTGGCAGCCAAGCTCCGATGAATCAATAAGGATCTACACGGTTGGTGTTGTAAAAGAAGGAACAGAAACTGGAATGGTACTCACACTGGATGAAGATGCAATATTCTGGAATTTTGAGACGAGAAAACCCCCACGGTCTGTGTGCAGTGAAAGCTGCCCTCCAGGCACCAGACGAGCCACTCGCAAGGGTCTTCCTGTCTGCTGTTTTGACTGCCTGCCATGTGGAGATGGAGAGATTTCTAACACAACAAATGCTGTTGAGTGCTTTCTATGTCCAGATGAGTTTTGGTCCAATCAATATAATAATCACTGTGTACCAAAAGAAGTAGAGTTTCTCTCCTATGAAGATCCTCTGGGGATCTCCCTGACCACTGCTTCTCTGCTTGGCACCTGCTTCTGTGCTCTTGTGATATTTGTTTTTGCTCTTCATCGTAATACTCCTATAGTACGTGCAAATAATTCAGAGCTCAGCTTCCTACTGCTGCTGTCACTCAAACTGTGTTTCCTTTGTGTCCTGCTGTTTATTGGTCGACCACAGCTGTGGACATGTCAGTTAAGACATGTTGTGTTTGGTATAAGCTTTGTCCTGTGCATGTCCAGTATTCTGGTCAAGACTATGGTGGTAATAGCTGTGTTCAAGTCCTCTCGGCCAGAAGGCAAAGGAGCAATAAAATGGTTTGGAGCAGTTCAACAGAGAAGCACAGTTGTTGTCCTCACAGTCCTCCAGGTTCTTATATGTGCAGTCTGGTTATCAACTGCCTCTCCAACACCCTATAAAAACAACCAATATATCCGTTCTAAAATAGTATATGAATGTGCTATAGGTTCAGTTGTTGGGTTTTCAATGTTACTCAGCTATATTGGCTTTTTGGCAGCAGCCAGCTTTTTGTTAGCCTTCCTGGCTAGAAATCTTCCAGATAATTTTAATGAAGCAAAGTTCATCACATTTAGCATGTTGATTTTTAGTGCCGTGTGGATTGCATTTGTTCCAGCGTATGTGAGTTCACCAGGTAAATACACAGTGGCTGTAGAAATTTTCGCCATTCTAGCTTCGACTTTTGGTTTACTGATTGCCATATTTGCCCCAAAGTGCTACATCATTCTTTTACATCCAGAGAGAAACACCAAAAATGTCATAATGggaagagaaacacaaaataaatag

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0038023 signaling receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-454 Predicted to enable G protein-coupled receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane.

Ensembl:

ensembl_id ENSDART00000145000

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00025747 lncRNA upstream 58300 33623312 ~ 33626850 (+) False XLOC_012918
TCONS_00027129 lncRNA upstream 58300 33623742 ~ 33626850 (+) True XLOC_012918
TCONS_00027128 lncRNA upstream 517059 33165613 ~ 33168091 (+) True XLOC_012896
TCONS_00025695 lncRNA upstream 772549 32906619 ~ 32912601 (+) True XLOC_012885
TCONS_00027127 lncRNA upstream 772589 32906489 ~ 32912561 (+) False XLOC_012885
TCONS_00026915 lncRNA downstream 37121 33725576 ~ 33729892 (+) False XLOC_012922
TCONS_00025753 lncRNA downstream 46880 33735335 ~ 33747115 (+) True XLOC_012923
TCONS_00027130 lncRNA downstream 339817 34028272 ~ 34048667 (+) True XLOC_012928
TCONS_00026916 lncRNA downstream 498627 34187082 ~ 34194374 (+) False XLOC_012929
TCONS_00026917 lncRNA downstream 500865 34189320 ~ 34194374 (+) True XLOC_012929
TCONS_00025749 mRNA upstream 5896 33675664 ~ 33679254 (+) True XLOC_012920
TCONS_00025748 mRNA upstream 28725 33652976 ~ 33656425 (+) True XLOC_012919
TCONS_00025744 mRNA upstream 85950 33591704 ~ 33599200 (+) False XLOC_012917
TCONS_00025745 mRNA upstream 89440 33591717 ~ 33595710 (+) True XLOC_012917
TCONS_00025743 mRNA upstream 101233 33580660 ~ 33583917 (+) True XLOC_012916
TCONS_00025752 mRNA downstream 37121 33725576 ~ 33731615 (+) True XLOC_012922
TCONS_00025754 mRNA downstream 73635 33762090 ~ 33766913 (+) True XLOC_012924
TCONS_00025755 mRNA downstream 90985 33779440 ~ 33782422 (+) False XLOC_012925
TCONS_00025756 mRNA downstream 91647 33780102 ~ 33783004 (+) False XLOC_012925
TCONS_00025757 mRNA downstream 91647 33780102 ~ 33796526 (+) False XLOC_012925
TCONS_00025746 other upstream 58300 33622917 ~ 33626850 (+) False XLOC_012918
TCONS_00025732 other upstream 240893 33443264 ~ 33444257 (+) True XLOC_012909
TCONS_00025687 other upstream 1596206 32084939 ~ 32088944 (+) True XLOC_012873
TCONS_00025679 other upstream 1838594 31845504 ~ 31846556 (+) True XLOC_012868
TCONS_00025666 other upstream 2679092 30998626 ~ 31006058 (+) False XLOC_012861
TCONS_00025772 other downstream 1384521 35072976 ~ 35074623 (+) False XLOC_012936
TCONS_00025779 other downstream 1485417 35173872 ~ 35176134 (+) True XLOC_012939
TCONS_00025784 other downstream 2118393 35806848 ~ 35806966 (+) True XLOC_012944
TCONS_00025785 other downstream 2130994 35819449 ~ 35819563 (+) True XLOC_012945
TCONS_00025791 other downstream 2452778 36141233 ~ 36142754 (+) False XLOC_012949

Expression Profile

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