RNA id: TCONS_00025755


Basic Information

Item Value
RNA id TCONS_00025755
length 2520
RNA type mRNA
GC content 0.48
exon number 4
gene id XLOC_012925
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 33779440 ~ 33796526 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tgtggacacTTTCTCTGAGATTGACTCTGTCTCTCAGATTGAAGGTGTTGCTCCAGTGGACACCTTTTATGAAGCTGAAGCTTTCTCTCAGATTGCTGGTGTGCCTTCAACGGACACTGTCTCTGAGACGGACGCTGTCTCTCCGATTAATAGAGTTCCTGTGATGGACACTTTCTCTGAGACTGAGGCTGACACTGTCTCTCAGATCGATAGAGTTTCTATCATGGACACTTTCTCTGAGATTGACTCTGTCACACATTACAACAAACACCCACCCAACACAAGTAGGATGTACTCTGAGTGTCACAAGAAGGCTGACCCTACAAACACAAGAAGACTGGTTCAACGTTACTCTAAATATCAAGGACTTGCAGTTGTTCTTGATGAGGAAGAAGACGCAATATTCAGAGCGAGTCCAGCTTTCAAAGTGTCTAAGACTGCTTCTGAGACCAACCAGATTTCTCAGATTGAGAGTGTTTCTGTAAAAGACACTTTCTCTGAGATTGACGCTGTCTCTCAGATTGATAGAGTTCCTGTGTTGGACACTTTCTCTGAGACTGACGGTGTCTCTCAGGCTAGCTCTGCTTCAGAGGACTCAGGAAGGCATAAAGAAGATGCTGACTGTAACATCTTGTTAGCCACTGACTCCTACAAGGTGACACATTACAACCAATACCCGCCCAACACTAGTAAGATGTACTTTGAGTGCCGTGAGAAGAAGGCCAACCCCAACAAACCCAGGAAAATCAGATATGACACGACGGTTTTCTATGGACTTCAGTATGTTCTCCACAAGTACTTTAAAGGATTGGTCGTCACACTGGAGAAGATTCAGGATGCAAAGGAAGTGTACCGGGAACACTTTCATGATGACATGTTCAATGAGAAAGGATGGAATTACATTCTGGAGAAGTACAACATCCATCTTCCCACTGAGATCAAGGCTGTGCCAGAGGGAAGTGTAATCCCGCGTGGAAATGTGCTGTTCACTGTGGAAAACACAGATGATGAGTGCTACTGGCTGACTAACTGGATAGAGACGATTCTTCTGCACATCTGGTATCCTATCACTGTCGCGACCAACTCGCGAGAGCAAAAGAAGATTCTGGCCAAATATCTGATGGAAACCTCTGGAAGCCTGGACGGGCTTGAATATAAGCTGCACGATTTCGGTTACAGAGCAGTTTCATCTCAGGAAACAGCTGGAATCGGTGGATCTGCACACTTGGTGAACTTCAAAGGAACAGACACCATGGCTGGGATCAGACTCATCAAGAAATATTACGGCACTAAAGAGCCAGTTGCTGGTTTCTCGGTGCCAGCCGCAGAGCACAGCACGATCACAGCCTGGGGAAAGGACCACGAGAAGGACGCTTTTGAACACATTGTCAGGATGTTCCCATccgtccctgtatctgtggtcaGTGACAGCTACGACATCTACAATGCCTCCGAGAAGATCTGGGGCGAAGAACTGAGGTCTCTGGTGGAGATGCGTAGCGCAGACGCCCCGCTGGTGGTCCGACCCGATTCAGGAGACCCCCTAGAAACAGTTCTGAGAGTGCTCGAGATCCTAGGAGAGATGTTCCCTCCGCTCGAGAACTCCAAAGGCTATAAGGTGCTGCCCCCCTACATCAGAGTCATCCAGGGGGATGGCATCGACATAGACTCTTTACAGGACATCTTAGAGGGCATTAAAAAGCACGGATGGAGCATTGAGAACATCAGCTTTGGTTCAGGAGGAGCTTTGCTGCAGAAACTGAACCGAGATATGCTCAGCTGCTGCTTTAAGTGCAGTTATGCGGTGACGAATGGGGTGCCCATAAACGTCTTTAAAGACCCCATTGCAGACCCCACTAAAAAGTCAAAGAAAGGCCGGCTTTCCCTTCACAGGACACCCAGTGATGGTCTGGTGACACTGGAAGAGGGAAGCGGCAGTCTGGGGGAGTACGGAGAAGACTTGCTCCAGACTGTGTTTAGGAATGCGAAGATCATAAAGACATACACTTTCGATGAGGTCAGAGAAAATGCAGAGCTGAAGGAGAGTGAATTGTGTCCCTCTGAGCAGCTCCCATCATCCCCTTCTTCACCACACTGCTCACAGACCCgagcacacacacaacatgcagAAACAGGAACATAACAAAGTATAGCCAGGAAAAACAGGACTCCACTGTTCCCGACCCTCTCCGACATCCAAACTGCAGCTCTGCCTTTAGTTTTGTCCAGAGGAGAACTGGTCCCCCGACCGAGCCTGGTTTCTCCCAAGGTTTTTTCTCCACCTAAATAGGTGGAGTttggttccttgccactgtcgcctctggcttgcttggttggggcTGGCAGAGCTGCACATCGGTGGGATGACCTTCAACAGGGAcatttgtattaaataataatattagctaAATAAACAGCGTGTAGTAGATGGAAATGGACACACcaagagccacacacacacacacacacacacaccggtgtTTCCTCTTTCTCAAGTAAATCCTGAGTGAAAAATCccgg

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000133349

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00025753 lncRNA upstream 32325 33735335 ~ 33747115 (+) True XLOC_012923
TCONS_00026915 lncRNA upstream 49548 33725576 ~ 33729892 (+) False XLOC_012922
TCONS_00025747 lncRNA upstream 152590 33623312 ~ 33626850 (+) False XLOC_012918
TCONS_00027129 lncRNA upstream 152590 33623742 ~ 33626850 (+) True XLOC_012918
TCONS_00027128 lncRNA upstream 611349 33165613 ~ 33168091 (+) True XLOC_012896
TCONS_00027130 lncRNA downstream 245850 34028272 ~ 34048667 (+) True XLOC_012928
TCONS_00026916 lncRNA downstream 404660 34187082 ~ 34194374 (+) False XLOC_012929
TCONS_00026917 lncRNA downstream 406898 34189320 ~ 34194374 (+) True XLOC_012929
TCONS_00027131 lncRNA downstream 1160306 34942728 ~ 35038409 (+) False XLOC_012935
TCONS_00027132 lncRNA downstream 1235910 35018332 ~ 35038409 (+) False XLOC_012935
TCONS_00025754 mRNA upstream 12527 33762090 ~ 33766913 (+) True XLOC_012924
TCONS_00025752 mRNA upstream 47825 33725576 ~ 33731615 (+) True XLOC_012922
TCONS_00025750 mRNA upstream 90166 33685119 ~ 33689274 (+) False XLOC_012921
TCONS_00025751 mRNA upstream 90985 33685150 ~ 33688455 (+) True XLOC_012921
TCONS_00025749 mRNA upstream 100186 33675664 ~ 33679254 (+) True XLOC_012920
TCONS_00025758 mRNA downstream 5918 33788340 ~ 33795749 (+) False XLOC_012925
TCONS_00025759 mRNA downstream 9186 33791608 ~ 33795159 (+) True XLOC_012925
TCONS_00025760 mRNA downstream 36155 33818577 ~ 33821891 (+) True XLOC_012926
TCONS_00025761 mRNA downstream 131746 33914168 ~ 33918356 (+) True XLOC_012927
TCONS_00025762 mRNA downstream 399233 34181655 ~ 34195744 (+) False XLOC_012929
TCONS_00025746 other upstream 152590 33622917 ~ 33626850 (+) False XLOC_012918
TCONS_00025732 other upstream 335183 33443264 ~ 33444257 (+) True XLOC_012909
TCONS_00025687 other upstream 1690496 32084939 ~ 32088944 (+) True XLOC_012873
TCONS_00025679 other upstream 1932884 31845504 ~ 31846556 (+) True XLOC_012868
TCONS_00025666 other upstream 2773382 30998626 ~ 31006058 (+) False XLOC_012861
TCONS_00025772 other downstream 1290554 35072976 ~ 35074623 (+) False XLOC_012936
TCONS_00025779 other downstream 1391450 35173872 ~ 35176134 (+) True XLOC_012939
TCONS_00025784 other downstream 2024426 35806848 ~ 35806966 (+) True XLOC_012944
TCONS_00025785 other downstream 2037027 35819449 ~ 35819563 (+) True XLOC_012945
TCONS_00025791 other downstream 2358811 36141233 ~ 36142754 (+) False XLOC_012949

Expression Profile

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