RNA id: TCONS_00027132


Basic Information

Item Value
RNA id TCONS_00027132
length 4405
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id XLOC_012935
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 34942728 ~ 35038409 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCGGAGGCCAAGTTTGTTTACCAGTGTTGTGTGAAGACACTGCGGCACACCAGCGACTAGTTTGGATGATAACAGCGCGGTCCATCGACGTATCAATATGTCGTGGATTAATGTCGTGATCTTTGCAGTGATTTACTTATGGATTTGCGGACGGGCTTGAAGGgtctccataatcctgagTCCATATCCTGAGGAGATGCTGTGgtagtcatggaggagtggagagcctGAGACTCCAGTGACCGAtgagtctccgcattgatcctgtgggtcAGCCTGAACACCTGCTGATGACTtacacacctgcagcttctccacaatgaatgtccagtgttctccagtctGCAGTGCCTAGGCtgcaggaagtttggccagaaaaGAAATGGTTGTACTTAACGGAGCATTGTTTCTCTGAAGTTTTTTTGCTTTCACTtttgtcagttggtgaagtttgtttctcgccactgtTACCTGGCTTGCttttttgggacttgtggagctgtgcatcggtggatttgttcttcagtgtttggactttcagcagtgaaaattaaattgCACGGAACTAAAgttaacttcaactctgaaaacttgaCTGACAGTTTAATTGTACTGGAACTTTTacatccctgttctacattgtaaaagtactATACAAATTAAAGATAAATTGAATGTAGACATTATGTCACGATCGAAAACAAAAAGGATCCAAAAGTGAGTGAAGTGATGTTCATTATAAGTAAAACAGTGTACAAAAAGGCTGAAAGccgaagacaaaaaaaaaatttgcagtaAGTCCAAAAGCAAAGAGTTCCTACTAGGCCAAACAGTCTCATCACCCAACAAACAGACTGCAGAGGAACCCtgggagacagacagacaggattaAGAACAACAGTGGACTGATAATCAGCAGTAACCACCGACTAAATATATAGCCAGCAAAACAGAAATCAGCTGGAGAATGCTGATTAAGTCAGCTGATTTGAGAGCATGTTGCCAGtgcaaaaggtaaacaaacactcATGGCATAACACCCAGACCCATAAACCGTGACACATTATTTTGACATAGTAACCTCGGTTAATCACATtacttcccacatagcaaaatttctctggcccagctctggcccacacaatcaggttttgcttggcccacatgccgcagtgaattacggtacatgactggaccacatctggcttccagacaagggccaaacacggaccatatctgggccaagtctcagccaagttaataactcataactgggcctgaactgggccagataggttggtgtgtcacgattgcaatgaaattgataaacccatggagtgatgctctttaggcacactatgggcacgctttttctcaaagtgacctgattagtagaatttttttctttactcaaaaatgattttagtgtattttaaatgtgggtcaagactggccaaactcaaatggcccacttatcaaatttttaaatctgggccaaatactacgtttttcatctggcccaaatcttgtgtgccgccttaaagacggtgccacctctgccaaacccgggccatgtttggcccacatgctgtatgccagtgccggatgaatgcctgctgtgccagctttatgccaaatctgggccagaattctttgctttTAGGGTTTTATTATTAAGTTAGAAACATGCTTTATTTCAGTAAAACTGCTTTGAAAATATATGTATCATGAAAAGCACTACACAAATAATGTTGATTTACCTCtattgaaacaacaacaacaacaaaaaagcaaccTGCAAGGCAACTTGGCAAAATACCAAACGATCCAAACAAACCCAACAACTTATTACAAAAGTTGACATTTGCAACTTAAGATTTGGGATGAAAGAGTGCAGTGGTACAGTGAATAACATAAATAAACGCCCACGCTAATATTTCTCTCCCATTTGTTTTGGAACATTGCAAACCAGTGATTCATCTGATTTCCTCGCCATAGTCTGTTTAAACCATCTAAGAGATTTTCAACAACGTTTTGAAGACATTTGATAACATCTGTGctgttatgttgttttatttgctgAAAGGAAATCTTTTTTAGACAACTATTTTGAACATTAAAAATATCAACATGAGGGTTATAGGTTGACATTTTATTGTGTTTACGTCCAGTGCAGGACATTCTAGACATTCTAGGCAAACACCTACATAAACCATGGAAGGTGCCAGAAATTTTTGGATTATCCGCATAaatcagaataataaaaaaacattaaaaatgtcaaagaGCAAATGAAAATGTTAATGTTGTCACACTTTGTTTCTATTGTGCTGACAGAATTGGTAAAAGCAACTTAATGGcgtataaacaaaaatgtttacatCCTACATTTATGattgatattgtttttttattatagcaGCTGGTGAAATTTAAAATGTGTGATTGTGGAAACAAGATTTAAATATTGTGGGAGCAGTTGGGCCAGGAAGAAAACTGTGCTCAGTGGAGAGCTAAAAAATAGGTTAATAAATAGAGGGAGTCGCCAAAGGTCGCAGGTTTGATTCAGAGTACAGGAAATTAAGTTTGTGAAAAGACTGAACAGTACTCTTGCAAATACCCTCACTACTTATGCATTATGTGTGTGTACACTGAATGGGTCAGATGCTAAGGACCAATATTGCCAATAAGGGTAAAACAATACTTGATAATATTCACTTCACATTGTTTGGATTGCTGTGTATAACTTGCTATGTATAATAAGTCCATTTACACAGTTTCTTGCCAGGTAAGTACTTACACACAAATACTTAACACAATAAACATGCTTGTGCAGGGTCTATACTGGCTTTTTGCGGGCACTGCAGGCTTTGACAAGCCAACAACATATCCAAACAGGTCCGGTGTGGGCTAGCCCTGATATGGACCAAAGCTGTGGGCTCTATGTGAGTaatggataaaagcgtctgctaaatgactaaaggtAAATGAATAGCTTTCACTAGCAGACAGCCTTTATTAATTCCATGAAGGACTGGTGTggacacatgcacacaaaaaatgtgaacaaaactttaataatcaaaaaaatatatttataatgattgATAAAAAGTAAAAGTCTGCTACTCTCACATTAAATGCTAGTATGCATTATGCATCTGAGGAGTCAAGGTAGATGTGGATGTCTGAAGAGTCAGtgcagatgaggaagtctgaggaGTCAGTGCAGATGTTTTTTACCTGCTAAGACATTGAAGAAGACAGATATCAAATTGTGCTGGTGCATATGATATTCCATACCTTTCTTGATTTACCCTTGTTAACATTAAATTTACTTTTTAACTCTTTTATGACAGTTGCTTTAAAGATGTATATCAAAAGTTAACTTCCTGTTGACCAAAACAGAGCCAATATTAAAGTAATAATGGTTTTCATTATCATCCTAAACATATGAATTAAGATAGTCCTCACTAACTTACGCTTGGAAAACATGAGCCCAATTTTCAAAACCTTTTTATATCATATAAATGTTTGAATAGTTTTGTGTAACGTTATCTATTAGATCAAAACAACACTTTTACATAgccttaaggcaggggtgtccaaactcggtcctggagggccggtgtcctgcatattttagttccaacaccaattaagcacctgaaccagctaaccaTGGTCTTTCTTGATATAAAAGAAACCCACAAGGTGtcttgaaggaagttggagctaaactatgcaggtcACAGGTCCTCTAGGACCAaggttggacacccctgccttaaggtAACACTTTTTAATAAGGTTGTATCAGTTAATGTCAGATAATGCATTGgttaacacaaataaacaatgaacaaacaCATCTGTGAAGCATGACTTAATCTTTGTTACTGTTAACTTTACATAAAGGGATGTGACATTGAAACTGAAACACTAGCCTCTACTTTAGCACCTCATTCATTACAAATTCTTGTTACTGCCACATACATTACTGAGGATATTGTACATTACTGGtgtttattgtcttgtttttgtttttggactGTTTCCTCATTTATGATTCCTGTTGTTGTCTTGACCCTTTGTCTGTTGTCTGGAGTTCACTTTATGGACTACTTATGTTTTGACCCCTGCCTATCTGACCATCCTTCTTTATAATAAAGCTGCGTTTGGAACTCCACCTCTGTTGTATGCTCTCATGCATTAGAGCGTCCACTTGAAGCATTTGTCTCACAGAAATCATAATTGAATTAGCAAGCACAATGGAACAGGCGAGTAAATCTGTCCAGTCACTTTTGCGACTGATTCTGCATCTGAGGCATCATGTCTGCAGCTAGATTCCGCTGCAGTGTTGGCCCATTATTGTTGGGCTTGGATGGACAGCCCTCACCTAATC

Function

GO:

id name namespace
GO:0022402 cell cycle process biological_process
GO:0042773 ATP synthesis coupled electron transport biological_process
GO:0042775 mitochondrial ATP synthesis coupled electron transport biological_process
GO:0006119 oxidative phosphorylation biological_process
GO:0006120 mitochondrial electron transport, NADH to ubiquinone biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0022900 electron transport chain biological_process
GO:0022904 respiratory electron transport chain biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0051276 chromosome organization biological_process
GO:0051301 cell division biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0045333 cellular respiration biological_process
GO:0032991 protein-containing complex cellular_component
GO:0005634 nucleus cellular_component
GO:0030289 protein phosphatase 4 complex cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00026916 lncRNA upstream 823958 34187082 ~ 34194374 (+) False XLOC_012929
TCONS_00026917 lncRNA upstream 823958 34189320 ~ 34194374 (+) True XLOC_012929
TCONS_00027130 lncRNA upstream 969665 34028272 ~ 34048667 (+) True XLOC_012928
TCONS_00025753 lncRNA upstream 1271217 33735335 ~ 33747115 (+) True XLOC_012923
TCONS_00026915 lncRNA upstream 1288440 33725576 ~ 33729892 (+) False XLOC_012922
TCONS_00027134 lncRNA downstream 34567 35072976 ~ 35074637 (+) True XLOC_012936
TCONS_00027135 lncRNA downstream 37006 35075415 ~ 35075774 (+) True XLOC_012937
TCONS_00025774 lncRNA downstream 90342 35128751 ~ 35132688 (+) False XLOC_012938
TCONS_00025778 lncRNA downstream 135453 35173862 ~ 35182693 (+) False XLOC_012939
TCONS_00027136 lncRNA downstream 392597 35431006 ~ 35431848 (+) True XLOC_012942
TCONS_00025771 mRNA upstream 83154 34861568 ~ 34935178 (+) True XLOC_012934
TCONS_00025770 mRNA upstream 181524 34667486 ~ 34836808 (+) True XLOC_012933
TCONS_00025769 mRNA upstream 376246 34601023 ~ 34642086 (+) True XLOC_012932
TCONS_00025767 mRNA upstream 376269 34599315 ~ 34642063 (+) False XLOC_012932
TCONS_00025773 mRNA downstream 90276 35128685 ~ 35143264 (+) False XLOC_012938
TCONS_00025775 mRNA downstream 92007 35130416 ~ 35148310 (+) True XLOC_012938
TCONS_00025776 mRNA downstream 135274 35173683 ~ 35197599 (+) False XLOC_012939
TCONS_00025777 mRNA downstream 135450 35173859 ~ 35182693 (+) False XLOC_012939
TCONS_00025780 mRNA downstream 190706 35229115 ~ 35251377 (+) True XLOC_012940
TCONS_00025746 other upstream 1391482 33622917 ~ 33626850 (+) False XLOC_012918
TCONS_00025732 other upstream 1574075 33443264 ~ 33444257 (+) True XLOC_012909
TCONS_00025687 other upstream 2929388 32084939 ~ 32088944 (+) True XLOC_012873
TCONS_00025679 other upstream 3171776 31845504 ~ 31846556 (+) True XLOC_012868
TCONS_00025666 other upstream 4012274 30998626 ~ 31006058 (+) False XLOC_012861
TCONS_00025772 other downstream 34567 35072976 ~ 35074623 (+) False XLOC_012936
TCONS_00025779 other downstream 135463 35173872 ~ 35176134 (+) True XLOC_012939
TCONS_00025784 other downstream 768439 35806848 ~ 35806966 (+) True XLOC_012944
TCONS_00025785 other downstream 781040 35819449 ~ 35819563 (+) True XLOC_012945
TCONS_00025791 other downstream 1102824 36141233 ~ 36142754 (+) False XLOC_012949

Expression Profile

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