RNA id: TCONS_00025780


Basic Information

Item Value
RNA id TCONS_00025780
length 1828
RNA type mRNA
GC content 0.50
exon number 14
gene id XLOC_012940
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 35229115 ~ 35251377 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTGATTTCACAGCTATGGATTCCCTGAACTTTGAGTCTGAGATGGAGGCGGATGGGCAGGGCAGTTACTCTCTGTTTCCAGCGCTGGACAGCATGAGCAGCCTGACTGGAGCCGCCGAGAGTCTTGACCCTGAAACCCCCAGCGAGGTTGCAGATAAACCAAACCTCACATGGCTCGATGCTGCTCAgATTGTTTTGGAAGAGGCTGGACGGCCCATGCACATCAAAGAGATCAAGCAGCGGATCATTGATCGCGGACTGGTGCAGTCAAATGCAAAGTCAAGCCTTGAGGCGGTCATGTATCGAGAGACACAGAAAGGGAGCAGACGCTTCAAGAGGATTGAGAGCAGAAATGGAGTTTTTGCTTTGTTGACGGATGAAGAGAGACAGCATGCATTGCAGGCGTTCTCTGCCCAGTCGGCCTTTTCAAGTTCAGGTTCTGGCTCATCTCTGGGACCCCTTCCTTCTCCAACGAGCCACACTGAGTCCAGATCTAAAGTCAGGAAAGGTCCTCGCAAGAACCAAAATGAGAAGTACCGGTTGAAGTATATCCGCCTTCGCAAAGCTTCTCGTGCCATGATATTTGAAAATGCAGCATTATATGATGAGATTGCTCACCTGGAAGAAAAGTTTGTCAGGGCAAAAGAAGAAAGGAGATTCCTGCTGAAGTCTTTGTTGCAGTATCAGTCAGTGGCTGAAGGAGAGCCCGTGGTGACTCCTGGCTGCAGCACACATACACCTGTCGCTCTGAGCTCCAGCACACCAGGTGGCGCTACTCTAGCAGGGAGTCACAGCCTGACCACTGGGCTCTCAGGACCTGAAGACAGCCTTTTGAAGAAACCCAAAAAAGAGCGaaaagagagaggaagagagaccAGCAGGGAAGAACTCATGAGGAAGATTTGTAAGAAGAGGAAGGTAGCTGAGGGAGGAGCACGCAAGCTCGTGCAGCCCATCTCGCTAGACTCTTCTGGAAGGCCACTCTTTCCCATTGTGCTCGGTGGACTCACTGTTTATAGCCTCGGGGAGATTATCACAGACAGGGCTCTGTTTCATGATGACACCGCTATCTATCCTGTGGGGTTCTGCAGCACTAGAGTTTTCGCCAGCATGAAGAACCCTGATCAGAAGTGTCTGTACACCTGCCAAATCAAAGATGGCGGCCAAGGACCACAGttTGAGATTGCTCCAGAGGACGACCCACAGAACGCAATCGTGGCTTCGTCAGCCCTCACCTGCCATGCTAACCTGCTCAAAGCCGTTGCTGCTCGCagAGGCAAACCCTTGACCAGCGTTGTTCCATCTGGAGCAGACTTTTTTGGTTTCTCTCATCCCACCATTCAGAACCTAATCCAGAGCTGCCCTGGGGCTCGCAAATGTAGCAATTATCAGTGGGTGCGTTTTGAAGTTTGTCGTCCTGGTGATGGACAGGTGGCTCATGGTCTTTCTGAGGACGATGCATCTGTGAACTTTGAGTCCTTTCAGCGATTGCAGAGCTGTGAGGAGAGTCTGAGCAATCAGGCAGAATACAGCAGCACAGTTCGAGCCCAGCAGCCAAACATCTCCTCTCACCTTCTGAGTCCAGCAGCCCTGCAGGCCAGTGTTGGGACGTCTCTCTCCAGCACTTGAGCTCATTCAAACACCTCTGACAGAGAGCTTAAACCAAGGTTAGCTTTCAAACTTTCAAACGATAAGCTCTTACCCAAACGATTCCTGTTAATGAAATAATTCCTACATTGTGGTAAAgccttttataatatttataatgtgATACTCGCATCTGCATTATGGCCAAGAAATGCTGAATAAAATAACCATTGGATTGAGT

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-080220-62 Predicted to act upstream of or within regulation of transcription, DNA-templated and transcription, DNA-templated. Predicted to be located in nucleus. Orthologous to human TBRG1 (transforming growth factor beta regulator 1).

Ensembl:

ensembl_id ENSDART00000184596

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00025778 lncRNA upstream 46422 35173862 ~ 35182693 (+) False XLOC_012939
TCONS_00025774 lncRNA upstream 96427 35128751 ~ 35132688 (+) False XLOC_012938
TCONS_00027135 lncRNA upstream 153341 35075415 ~ 35075774 (+) True XLOC_012937
TCONS_00027134 lncRNA upstream 154478 35072976 ~ 35074637 (+) True XLOC_012936
TCONS_00027132 lncRNA upstream 190706 35018332 ~ 35038409 (+) False XLOC_012935
TCONS_00027136 lncRNA downstream 179629 35431006 ~ 35431848 (+) True XLOC_012942
TCONS_00027137 lncRNA downstream 889839 36141216 ~ 36409181 (+) False XLOC_012949
TCONS_00026918 lncRNA downstream 1147747 36399124 ~ 36409313 (+) True XLOC_012949
TCONS_00026919 lncRNA downstream 1633240 36884617 ~ 36884817 (+) True XLOC_012956
TCONS_00027138 lncRNA downstream 1691814 36943191 ~ 36944417 (+) True XLOC_012958
TCONS_00025776 mRNA upstream 31516 35173683 ~ 35197599 (+) False XLOC_012939
TCONS_00025777 mRNA upstream 46422 35173859 ~ 35182693 (+) False XLOC_012939
TCONS_00025775 mRNA upstream 80805 35130416 ~ 35148310 (+) True XLOC_012938
TCONS_00025773 mRNA upstream 85851 35128685 ~ 35143264 (+) False XLOC_012938
TCONS_00025771 mRNA upstream 293937 34861568 ~ 34935178 (+) True XLOC_012934
TCONS_00025781 mRNA downstream 156544 35407921 ~ 35413608 (+) True XLOC_012941
TCONS_00025782 mRNA downstream 491461 35742838 ~ 35802474 (+) False XLOC_012943
TCONS_00025783 mRNA downstream 491461 35742838 ~ 35802483 (+) True XLOC_012943
TCONS_00025786 mRNA downstream 591556 35842933 ~ 35898821 (+) False XLOC_012946
TCONS_00025787 mRNA downstream 591648 35843025 ~ 35898821 (+) False XLOC_012946
TCONS_00025779 other upstream 52981 35173872 ~ 35176134 (+) True XLOC_012939
TCONS_00025772 other upstream 154492 35072976 ~ 35074623 (+) False XLOC_012936
TCONS_00025746 other upstream 1602265 33622917 ~ 33626850 (+) False XLOC_012918
TCONS_00025732 other upstream 1784858 33443264 ~ 33444257 (+) True XLOC_012909
TCONS_00025687 other upstream 3140171 32084939 ~ 32088944 (+) True XLOC_012873
TCONS_00025784 other downstream 555471 35806848 ~ 35806966 (+) True XLOC_012944
TCONS_00025785 other downstream 568072 35819449 ~ 35819563 (+) True XLOC_012945
TCONS_00025791 other downstream 889856 36141233 ~ 36142754 (+) False XLOC_012949
TCONS_00025796 other downstream 1378443 36629820 ~ 36631294 (+) False XLOC_012951
TCONS_00025798 other downstream 1381876 36633253 ~ 36638166 (+) True XLOC_012951

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000180_00674773_00697178.mRNA True 2287 mRNA 0.48 13 CI01000180 674479 ~ 697491 (+)