RNA id: TCONS_00025771


Basic Information

Item Value
RNA id TCONS_00025771
length 1620
RNA type mRNA
GC content 0.48
exon number 6
gene id XLOC_012934
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 34861568 ~ 34935178 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTCTGTTCTCGCTAACCACGTTTCACATTATTTCTCAAACTACAGACAAAAGAGAAGAAAGCGTAACACTTAACAGCTGTATGTCAGATTGTGTTTCCATCTCTTTTCCACCTGCTTTCCCTTTTTTTCACCTTCTCGCTCTCGCTCAGTGAGATTTCAACACCCATTAAACCCTGGATGGTACCTGCTAGCTTCACACATGGACGTGCCCTGGGCTCCTCTAGTTTACACGCTGTTGTTTAGCTGCTCACACTGAGATGCTGGTGTTAAAAGTGGATGCCAGAAGGACACGCTTGGGTGACTTTCTTGGGGAAGGGGAATTTTTGTCGGTATCTCTTGTGCTCACAGTCAAAAGAGGAAAGAGAGAACAGATGTTAGCGGCCGctgctttaaataaaaacacatctcTGTTGTCTTTTAGGATAAAGACTGTGGAGAAGGAGGATCTGCGAGTGTTGTGGAGAGAACAGACAGACGCCATAGAGAGGTTGTCCCGAGACCTGAGGGAGAAGCAGGAGAGCTGGTTGTCATCTCAACAGCGATGCCAGTCCATGCAGGAGCAGCTGTTGGTGTGGCAGCAGAAAGAGGAGGCAGCGACCCGGAGACTGGAATGGGCTGAAGGCGAGATCAAGGACCTGAGAGAAGCCCGATGCACTTTGCAGCAGCAGAGAGAGGAGCTGCAGAAAACACACATGGGAGAATTGGAGAGACTGGAGGAGAGCTTTAGAAGCAGGCTGAAAGCTACAGAAGAGCACAGTTTAAAGATGGAGGCTTTTCTCCAGCAGAAACAGGCTGAGCAGGATAAACAGCTGAAACAGCGAGAGACAGAGTTAAGAAGAGAAGCTCATATTGAGCTAGACATTCAAAGACAGAAAAACCTGGAGCTGCTTAACAAATACCAGAATGAAATCCAGCAACAACAAAACAAGATTCCCGCTGTCATTCATTCAGCCACACAGGTGCTCCAAGAGAAATTGTCGGTGCTGCAGGAGCGTGTTAAAGAGCAAGAGAAGGAGATGCAACATATTCATGAGAGCTCCTCTCAGAGGCAGCAGCAGTTACTGCAGGAACGCAGGACAGCAGAGGCACAGCTGCAGTACACCTTGCAGGAGCTGCGGCAGAAAACACTAGAGCTGAACAAGGCTCACAGTAACATACAGCAACTCCAAGAAGAGAGGGTCATCCTAGAGAAAGAGAATTCCATTCTTGAAGAAACAGTAAGGCGTGAGTGTGAAGAGAGGGAAGAACTAACAGCGGCTCTGACCTTGGCCAAGGAACAACTTCAGGGATTCAAGCACTGCGTAACAAAACCTCATGATTCCCAGACACGCACACAACTCTCCAGATCCTCAGTGGCACACCCGGATCTCCCTGTCCCAAGACTCAATCCCAGCCGACCCCATCCTCAGTCAGGAAACCACAGCTCATTTTCCACACAGAGAAACAGACATAGTTTGTCTGGGTTGAGTTCTGATGATGTGAGTAAAAGTGCTGCATCTTGGCATGGATCATCACAACCTGCACCCACCCTCCCCAAAATCAGCAAAAAGAAAGTCACTTCTATGAACGACTTGTGCAAAAGCTTTGCCATGTTGAGAGGCAGACAAGACAAACTCTGA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000192825

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00026916 lncRNA upstream 667194 34187082 ~ 34194374 (+) False XLOC_012929
TCONS_00026917 lncRNA upstream 667194 34189320 ~ 34194374 (+) True XLOC_012929
TCONS_00027130 lncRNA upstream 812901 34028272 ~ 34048667 (+) True XLOC_012928
TCONS_00025753 lncRNA upstream 1114453 33735335 ~ 33747115 (+) True XLOC_012923
TCONS_00026915 lncRNA upstream 1131676 33725576 ~ 33729892 (+) False XLOC_012922
TCONS_00027131 lncRNA downstream 7550 34942728 ~ 35038409 (+) False XLOC_012935
TCONS_00027132 lncRNA downstream 83154 35018332 ~ 35038409 (+) False XLOC_012935
TCONS_00027133 lncRNA downstream 98592 35033770 ~ 35038409 (+) True XLOC_012935
TCONS_00027134 lncRNA downstream 137798 35072976 ~ 35074637 (+) True XLOC_012936
TCONS_00027135 lncRNA downstream 140237 35075415 ~ 35075774 (+) True XLOC_012937
TCONS_00025770 mRNA upstream 24760 34667486 ~ 34836808 (+) True XLOC_012933
TCONS_00025769 mRNA upstream 219482 34601023 ~ 34642086 (+) True XLOC_012932
TCONS_00025767 mRNA upstream 219505 34599315 ~ 34642063 (+) False XLOC_012932
TCONS_00025768 mRNA upstream 259619 34599322 ~ 34601949 (+) False XLOC_012932
TCONS_00025766 mRNA upstream 325501 34478959 ~ 34536067 (+) True XLOC_012931
TCONS_00025773 mRNA downstream 193507 35128685 ~ 35143264 (+) False XLOC_012938
TCONS_00025775 mRNA downstream 195238 35130416 ~ 35148310 (+) True XLOC_012938
TCONS_00025776 mRNA downstream 238505 35173683 ~ 35197599 (+) False XLOC_012939
TCONS_00025777 mRNA downstream 238681 35173859 ~ 35182693 (+) False XLOC_012939
TCONS_00025780 mRNA downstream 293937 35229115 ~ 35251377 (+) True XLOC_012940
TCONS_00025746 other upstream 1234718 33622917 ~ 33626850 (+) False XLOC_012918
TCONS_00025732 other upstream 1417311 33443264 ~ 33444257 (+) True XLOC_012909
TCONS_00025687 other upstream 2772624 32084939 ~ 32088944 (+) True XLOC_012873
TCONS_00025679 other upstream 3015012 31845504 ~ 31846556 (+) True XLOC_012868
TCONS_00025666 other upstream 3855510 30998626 ~ 31006058 (+) False XLOC_012861
TCONS_00025772 other downstream 137798 35072976 ~ 35074623 (+) False XLOC_012936
TCONS_00025779 other downstream 238694 35173872 ~ 35176134 (+) True XLOC_012939
TCONS_00025784 other downstream 871670 35806848 ~ 35806966 (+) True XLOC_012944
TCONS_00025785 other downstream 884271 35819449 ~ 35819563 (+) True XLOC_012945
TCONS_00025791 other downstream 1206055 36141233 ~ 36142754 (+) False XLOC_012949

Expression Profile

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