RNA id: XM_036938054.1


Basic Information

Item Value
RNA id XM_036938054.1
length 9704
RNA type mRNA
GC content 0.58
exon number 46
gene id LOC110513475
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 11471939 ~ 12290710 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACCAGTTAACACGCGGAAGTTCTGTGTTAGTTGACGATGACGTTTGCCTGAGACAAAAAATGTGCCTTGCTTCAGCTAACGGGATGAATTAACTAGTGTGCTACCGAAGAGATTCGTTGAAAACTGCAGCAAACACGTAAGGGAAATAATTGAGTGACAGAGGCAGGATGTTGGAGTCCTATGTCACGCCCCTGTTGATGACCTACGTGAACAAATACATCAAGAACCTGAAGCCCTCTGACCTGCAGCTGTCGCTATGGGGAGGAGACGTAGTACTGAGCAAGCTGGAACTGAAGCTGGATGTCCTGGAGCAGGAGCTGAAACTGCCCTTTACCTTCCTGAGCGGTCACATACATGAGTTGCGTATCCACGTACCCTGGACCAAACTGGGCTCCGAGGCCGTGGTCATCACCATTAACACAATGGAGTGCATCCTCAAACTGAAGGACGGAGCGCAGGACGACCATGAGAGTGTTTCTAGCTCCACCAGTCGCAGCGCCTCAGAGAGCTCCAAGACCCTTCCCAAGCCCCGTCGCCTCCAGCAGGCCGCCCCCTCCGACCCAGACCTGCCCCCAGgCTACGTCCAGAGTCTGATCCGTCGGGTGGTGAACAACGTCAACATTGTGGTCAACAACCTGATCTTGAAGTACGTTGAGGACGACATCGTCCTGTCTGTCAACATCACCTCTGCTGAGAGTTACACCGTCCATGAGTTCTGGGACCGAGCCTTCATGGACATCACAGctcctgACCTGGTGCTTCGTAAAGTGATCAACTTCAGTGACTGTACGGTGTGTCTGGATAAGAGGAACGGCAGTGGGAAGATCCAGTTCTACCAGGATCCTCTCCTCTACAAGTGTTCCTTCAGGACCCGACTCCACTTCACCTACCACAACATCAACTCTAAGATCCCTGCTGTCATCAAGATCCAGACGATGGTGGAGTCCCTGAAGCTGTCCATCACAGACCAGCAGCTGCCCATGTTCATCAGGATCATGGAGCTGGTCCTCAGCCTCTACTACGGAGAgataggaggagggaaggagggagaggcggAGGAGGGGAGCGGACATGGAGAGGTCATCACTACGCCAGGTCTGGAAGGAGACCCAGAGGCCCAGGTCATGGCAGGACAGTCCCCCAGCCCAGAGCTTTACatgcagggggaggagggggaccagggctgggTGTCCTGGGCCTGGTCCTTCGTCCCAGCCATCGTGGGAgctgaggatgaggagggagaggaaggcttctaccagcagggggaggagggaggccgGTCCAGCCCACAGCAGAACCCACCTAAAGACCCTGTTGTCTCCATAGGCTTCTACTGCACCAAGGCCTCTGTCACATTCAAGttgACAGAGATGCAGACGGAGAGCAGTTACTACAGTCCTCAGAAGATGAAGAGCAGGGAGGGGCTCTGTCTGGAGCAGGAGGGCATCACCATGGAGgtgCTGATGATGGGGGAACCCTTCTTCGACTGTCAGATCGGCATCGTGGGCGTCCGGGCGCTCTGCCTGAAAGGCATCATGGGAGTGCGGGACTTTGAGGAGAACTTGAACAGACGGGAGGAGgaTGCAGTGTTCTTCAGCTGTGGAGAGAGTCTGAGCAGTAAAGGCATGACCTACCTGACCAACTCCCTGTTCGACTACCGCTCTCCAGAGAACAACGGGGTCAGAGCAGAGTTCATCCTGGATGCCACCAACCACAAGGAGACCTACACAGAGATATCAGGCATGCAGCGCTTTGGGGCCTTCTACATGGATTACCTCTACACAGTGGAGACCAGCAGCACCAAGGtgtgtgtAGGGCAGCAGGACTTCACCATGGCAACAGGGCCTAAAGAAGAACCGGTCCCCCCTGTCCAAGAGACGTCTGTCAAGAGGCTGGTGGTCGGACCTCTGGACTTACGGCTCAACAGCAGCGCCGTGCACCGCCTTCTCAAGATGCTGGCCTGCGCCATGGACCACGAGTACCAACCCTACTACAAACCACAACCAGacccagTGGAGGTGCCCCGGGCTCCAGCCTCCCAGGAGGAGGTATCAGTGCTGGAGGAGTTTATCCCTACCAGGCTGACCTGCCTCACCCTGCAGAAGGTCACTGTCACCCTCAACATGGCCGAGTTCAACCTCCTACACACACTGATTCCTGTCATCATGGGACAGAAGgcccCACCAGGTCCGGTCAGTGTGCCAGTCTTCCAGGCGATGCGACCCCTGCCGGCCCTCAGGTTCCAGGTGGACAGCGTTAATGTGGAGCACTCTGTTCCCATGTTCGCCCCTGAGCTCATCAACACCGTCTCCTCTCTCAGCCAGCCCTCTGATAACCTGCTGCACCACTGTTACACACACTGCTAcctcaaggtGTTTGGAGTCCAGGCTGGTTTGACCTGTCTGGACAGTACAGGCGgtttcctccctctgtcccctctcatCCCTTCCTTCAGTACAGCCCTCTACGGCAAGCTGCTCCAGATGCCTCAGTACTGgacaAAGCGCTCGTCAGTCCTGATGACAGAGTGTATTTTTGAGCTGCCCAACTTCACGGTGCAGGCCACGCGTCCCCAGATCCTGCTGCTTCAGGCCATGCTGCAGAGCTGGACACACAGCCTGGGAGACGGTTCCCACCCTGGGGTCAACGAGGCCCTGCTCAGCCATGTCTACACAGCACCAGGTGTGAagtctccgtctcctcctcctcctccgaccCTGGAGGCCTCGGTCCAGAACGTAGAGCTGAAGTTCTGCAGCAGAGCCACGGGGAACTGCGTCGGAGGGACCGTGGGAGCTGTTAAAGTGTGTGCCAGGACCCCAGgtTCACCAGAGGGTATGAAGGAGAAGCTGGTTCCTCTGCTCCAGGGTCCATCTGACACTAAAGAGCTTCACCAGAGTCGCTGGCTCAATGAGATCCGTAAACCTGAGTCCCTGCTGGCCCCTGACCTCCTGACCTTCTCAGTACAGATACCTCAACACGGGGTCGACGGCCGTAACTCCTCTGGTGCTGTGTTCCTGGTCAGCGTCCAGGGCATTGCTGTGAACCTGGATCCAGTCTTCAGTACATGGATCCTCCACCAGCCTCAGAAGAGGAGCTGCAGGCAAcagGCTGCGGTGCCGGTTCCCGTGTCCATGTCCAAGCGGAGGGAGGACGAGGTGTCTGTGGGGAGCATGCCATTCGCCAAGCAGCCATCCAATCAGGCCTCGGACTACGCCAGCAGTCCGGTCAAGACCAAGACTGTCACAGagTCCCGTCCTCTGTCCATCCCTATGAAGGTGATGCCTTCCTCTCCAGAGACCTGGACCACCCCAGAGGAACGTATGAAGGAGCTAATCTCTCACGTCTGGGACGCCGTCAAACGACTCACACTACAGttgGATCTCCAGTCATGCTGTGTGTTCCTCCCCAACGACAGCCTCCCCTCTCCCAGCACCATTATCTGTGGAGACATCCCCGGTACTGTCCGTAGCTGGTACCACAACCAGGCCACCATGCCTGGGACTCTGGTAGTCTGCCTGCCCCATATCACTGTGCTGTCTGCTGGACACAAATACATGGAGCCCCTGCAAGACCTCCCCTTCATGGTGTCCAGGCCCATACTGGAGGAAGGTGATGCCTTCCCGTGGACCATAACCCTGAGCCAGTTCAGTGTGTACACCCTGTTGGGTCAGCAGCGGTCTCTGAGTCTCCTGGAGCCGATGGGCTGTACCTCCACCCTGGCCGTCACCTCCCACAAGCTGCAGGCCGCGGGCCCCGAAGGACGCCACGCCTTCATTGTCTGTCTGCACGTTGACCTGGAACCTCTGAACATCAAGGTCTCTAACCCCCAGgtcCAGTTGCTGTACGAGTTGTTCCTGTCCTGGAGTTCAACGTGGGCCCGTCTGGAGAAGAGGGGCATCCTACGTCAGACCTCCACTATCCCAGACCCCCCCACTGGGCCGACCCCCTCCTCCCCCGTCCGCTCCAGCACCGCTCTCCCAGACACCAGCACCTGCTCCCCCTCTGCTGATTTTGGATCCCCCACcgagGGTGACTCTGTTCCAGCGGGTGATGACTCTCCGTTCTCCGACACGGTGACCCTGGAGCAGAAGACCAGCAGTATAGGGGGCGCCAGCGGGAAGGTCAGCCTCTGGATGCAGTGGATGCTGACCAAGGTCACCGTCAAGCTGTTCGCTCCCGACCCCAACGCCAAAAACACAGagatcTGTGTGATCAGTGAGGCTGAGGATCTCAGTGCGTCAGTAGATGTTCAGGATGTCTACACCAAGATTAAATGTAAAGTGGGCAGCTTCAACATGGACCAGTACCAGACCAGTCCAGAGGAGGGGTCTGGTCTTGCAGTGGGCCGCTGTGGAGGGGTTGTCCTGTCTTGTACTGATAAGCTGAACAGACGTACGGTGTTGGTTCGACCCGTCAGCAAACAGGACTCCTTCAGCCACCTCTCTGGCTTCGTTCCGCCTACAGCAGCCAAGGTCCTGGAGGTTTCCTCCCACCAGCAGCACGGATTCCTGTCCATCACATACACCCAGGCGGTCACCAGAAACGTCCGCCACAAGTTGACCACGCGGCTGGAACGAGCGGATCCTCGCGGGGCCCAGCGGCTGACGGAGGGCCCGGCTGACGGGTCTCCCCACTACCTGAGAGAGATCCTGCTGACCGCCCAACCTTTTGaccttgtcctctcctgtcccctacTGGCCACCGTAGCCGGGGTGTTCCACGCCTCGCTGCCACGACGGTACCGGGACCTCGGCAAAACGGCGGGCCAGCCGATGAGAAGTCACGCCCTGACGTCGCGCAGCCTACCGCTGCTATATGTCAACACATCGGTGATCAGGGTGTTTTGTCCCTGGAACCCAGACGGAcaggacagacacacagAACCccagctgaggagagagagagaggacactctgGTGCTGAAGATAGGATCTGTCAGCGTGGCCCCTCAGGCAGATAACCCTCTGACTAGAACCGTGCTGCGCAAGGACATCTACCAGCGAGCGTTGAACCTGGGCATCCTGCGCGACCCGGGGTCAGAGGTGGAGGACCGTCAGTACCAGCTGGATCTGCAGTCCATCAACATCGGTACCGCCCAATGGGAGCAGCTCAAACCAGAGAAGGAGGGGTCTAAGGGGGGCGTGTCCACCGAGACAGAGAGGAACTCACAGAATCCTGCCCTGGAATGGAACATGGCCAGCAGTATCAGGAGACACCAGGAGAGGAGAGCCATCCTCACCCCCATCCTGACGGActtctctgtcagagtgacagcAGCACCTGCCATCATATTCAGCAAGCCCAGATCCCCTGACAACAGACAAGTGGAGGAGGTGCTGGTGTGTGGTCACTCCCTGGAGGTGAACGTAACATCTAGTCTGCAGTTCTTCCTCAGTGTGGCCCAGGTCCACCTGCTGCAGCTACTGTTCCGAGCCAACATGGTGGAGAGACCTGCCCCAGAGACAAGCCAGGTGCATCGTGGGGAGCAGCAGTGTAGTTCCTCGGCGGGGCCTTGCGGTGTGGACTCATCGTCCAGTCGCAGCGGCGTCCAGGACAGTGGGTTCGGCAGCGACAGCGCCAGGATCCGTATCGTCCAGATGGAGCAGCAGAGTGGAGGCTCCCACCACCGCATCGCCAGACCCTCCAGGAAGTCCACCGTCGTCAAGAACCTCTCCTTCGTCCCCTTCGACGTCTTCCTGACCGCGAGTAAACTCTCTCTCATGACCTACGCCTGCTCCACTCTAGCCAAGACCCCCCCCGCCTCGCCGGAGAAGAAGGATGGAGACGGGCCGACAGGGAAGAGTGCCCTGAACCAGCCAGACACcatccctacctcctcctcctcccccaaccCAGGCCCTCCTACCCTGGTCCCTCTGTCAGGCCTGACAGCAGAGGACCTCCTGAACAGTAACACCGTTCCCCAGGAGCCCCGCGGTTCCCTCCTCTTCCTGGACTCCCTGCCCGCCCCCAGCCGCTCCTCGGCCCGCCAGGCCCTGGGGGTCACCATCGTGAGGCAGCCTGGGAGGAGAGGGGCTGGAGACCGGGTCCTGGAGCCTCTACTGTACCTTCAGGTGGTCCAGCCGTCGGCCCTGCTCAGCTGTCACCACCGTAAACAGAGGATGGACGTGTCTGTGTTCGATGTGTCTCTGAGGGGAGTCTCCTCTGACTATAAGTGTCTGGATCCAGGGAAGTCTCTCCCAGAGGtattagactacagtgtgttgTGGGTCCAGACAGTATCAGGAGAGTCTGACAGTCAGACAGGTGTTCCCCCTCCTCTGGCCTGTCTGCAGATCAGAGACTTCCTCAGTGGACCAGCGGAGCTGAACGTGGAGCTGTCCCGGCCCCTGAAGGTGAACCCTACGCTGGTGAAACTGGAGCAGACCAAGGCCTACCTGAGGAGGGTCCTACCTCATCACTACTGGGAGACTCCCaaacccccctccacccctcatTCCTCCCCCAGTAGGACCtcgtcctcctctccccatcgtcccgacccctcccacctcagctcCCTAAGATCCCTGGCACCCTTCCACAAGGTGTCCCTCCGCACCGCCCAGATCGTGGTTGTCATGGAGACGGAGTCGCACCCTGCCCGGCCCAGCCTGTCCTGGTCGGTGTCGGCTATGAAGGGTACCATGAACATGAAGACTGGGCCCAAGCTAGACGACCCGGTCCAGTCAGTCTCAGTGCTGTTGGAGCTGCAGGATATCCTGTTGAGGACGGGTCTGAAGGATCGGAGCCGTCTGCTGCTGGGGCCTTTCTCCTGTAGCGCCGCCCTAGAGGCCAGGTGGTGTAGGCACAGCAGCAGTCCTGAACCTGAGACTGGGACCCCTAAACTACTGCTGGACCTGAAGGGAGGCCTACTGCAGgtgttcTGGGGCCAGGAGCATGTAAACTGTCTGTGGCTGGTGTATGAACACCTGCAGGCCTACCTCCAGAGGAACCAGGGATCTGGGTCAGGGGCTGGGACTGGGTCTGGGTTTGGGTCTGGGACTGGGTttggggctgggactgggtcaGGGGCTGGGACTGGGTCTGGGTTTGGGGCTGGGTCTGGGACTGGGTCTGAAGAGGAAAAGACCCCCATTGACACCCAGTCACCCCCCTCCCCTGAATCCCCCTCCCCCAGGACAGAACACAGCTCTGACGACCTCCGCACCGGGCTGTTCCAATACATACAGAACTCAGcctatCAGAAACTACCTGGTCCATATGAGGTTGTGTTCTATAACGAAACAGACGACAGTCCAGGAGTCATGTTGTGGCGTTACCCAGAATCCCGTGTGTTGACCTTCGTACGCATCACTCCAGTCCCCTTCAACACCACCGAGGACCCCGAGATCAGCACCGCAGACCTGGGAGACAGACTAAAGGTGCCGTGCAGCCTGGAGTATTGGGACGAGCTCCAGCACGCCTTCGTCCCCTACCGAGAGTTCAGCCTATCAGAGAGTAGCGCCTGCGAGCTGACCCTGCCCAGCCTGACGCTGACCAATGAGCAGAAGGATctggtgacctctgacctgtgGAGGATCGTCCTCAACAATAACCCAGACGGAGGAGACGAACAGAGTTCTGACAGTGAGTCAGGTTCTCAGCAGGGTTCCTCGGGGTCCCAGCTTCTGCCCTGTGACCAGCTGGTGTCCCCCACGGCGCTGGCAGCTTGTACCCGCGTCGACTCCTGCTTCGCCCCCTGGTCCGTGCCCTCCCTGGGCGTGTCTCTCACCCTGGCACAGATACAGCtgcacctctaccaccacctggAGCAGCTGGGCACAGCGCCGTCACGTCGACTCCGCCCCTTCCTGCCGGACAGGAAGTTGCCCCAGGAGCAAGAGTACCTGGTCATCGGGGCACAGGAGCCGCGGCTGTTCCTCCGCCAGTGGAGCGGTGGCGGTAACGTCAGCGCCGCCCGGCTCTGCCAGGAGATCCAGTTCTCCACCGAGCTGGACTGCAGACTGTTGGAGTATCGGAACTTGACTTGGCTCTGCCTGCTGCAGCCGTTCATACTGCAGGGTCAGGTTGCGGTCACACGCTGCTCCAACAACGTCCTCCTGGACGGCAACGTCTTCGTAGACCCGGTCTTCATCAACATCAGCCAGAACACCGTTCACAGTCTGGATACGGCCCTACGGGGCTGGCAACAGaaTGGGGATGAAGGTGCGGAGGAGTTGTTGATCAGTCACCATGTGCTCTGTAACGACACCCAGGAGACCCTGAGGTTTGGCCAGGTGGACACCGATGAGAACGTCCTGCTGCCCTCCTTACACAGCCACCAGTACAGCTGGAGAAGCCACAAGtcaccacagctccttcATATCTGTATAGAGGGCTGGGGTAACTGGCGTTGGTCTGAGGCCTTCAGTGTGGACAACGTGGGGACTCTGTTGAGGACTATTCAATATAAAGGACGGACTGCCTCGCTCATCATCAAGGTGTTGCAGCTCAACGGTGTCCAGAAACAGACAAAACAGAACGGCTACGTTCTTATCCTGCTCCGCTCAGACATCTTGTTCTCGTTGGCTCCAACGACATGGGTGTAAGtgtcctggtcacatccaatCCCCCCAACAAACTGCCGGGAGATTGTGACAGCTCCTCACAGCAACGGAAGATGTCTCTGGTCACAGGCTGGCTgtgggacgtgtgtgtgtgtgtgtgtgtgcgcgtgtgtgtgtgtgtgtgattacgtGATGGAGAGCCTGTGAGAAGGGCTATAAAGAGATGATTGATGAGCTGGAGAATTCTCTCTCTTTAGAGACCaatccctctcctcaccaccatTATCAACACCCCcacccagagaacacacacacacacacacacacacacacacacatactgggtGGTGGCAACAATCAATTGTGAGCTGAATTAGAAGTGTCAGGAACAGATGAGGGCTTCCTGGTGACTGAGCTGGGTTAGAGCTGGACAGGGGCCAGAGGGAGATGTGGGTTtggtccaaaatggcacccgatttcctatgtagtgcgctactttggaccagggcccagagggaatagggtgccatttgggccgtGGTGTTCTGTAGAGTacagggaggaatagagaggggggacagCTTGGCCGTGGTGTTCTGTAGAGTacagggaggaatagagaggacaGCTTGGCCGTGGTGTTCTGTAGAGTacagggaggaatagagaggacaGCTTGGCCGTGGTGTTCTGTAGAGTacagggaggaatagagaggacaGCTTGGCCATGGTGTTCTGTAGAGTACAGGGAGGAATAGAGAGCACAGCTTGGCCGTGGTGTTCTGTAGAGTacagggaggaatagagaggacaGCTTGGCCGTGGTGTTCTGTAGAGTacagggaggaatagagaggacaGCTTGGCCGTGGTGTTCTGTAGAGTacagggaggaatagagaggggggacagCTTGGCGGTGGTGTTCTGTAGAGTacagggaggaatagagaggacaGCTTGGCCATGTGATAGTGATAGTGACAGACACAGTGGCCAATCAGGCTGGGGGACAGCAGCAGGCAGGACCCATACTGACCATCATCCCTGATTAACACGCCAcaactgtgtcagtgtgttggtcaaTAACCTGATATATCCAACAAGTCTAGCTTTGACTCTtacataacctctctctctctctctctctctccctctatccctctttctctctctctctctctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130344 lncRNA downstream 6054 11536833 ~ 11539732 (-) True G113806
TU130338 lncRNA downstream 28133 11517109 ~ 11517653 (-) True G113800
TU130331 lncRNA downstream 44006 11501385 ~ 11501780 (-) True G113794
TU130327 lncRNA downstream 51755 11493536 ~ 11494031 (-) True G113790
TU130325 lncRNA downstream 53186 11492331 ~ 11492600 (-) True G113789
TU130774 lncRNA upstream 31809 12322519 ~ 12322725 (-) True G114104
TU130778 lncRNA upstream 51257 12341967 ~ 12342171 (-) True G114108
TU131167 lncRNA upstream 91380 12382090 ~ 12384153 (-) False G114340
TU131170 lncRNA upstream 91538 12382248 ~ 12384153 (-) False G114340
TU131169 lncRNA upstream 92434 12383144 ~ 12384153 (-) True G114340
XM_036938010.1 mRNA downstream 142924 11398092 ~ 11402862 (-) True LOC110514530
XM_036937950.1 mRNA downstream 284277 11248037 ~ 11261509 (-) False prelid3a
XM_036937954.1 mRNA downstream 284277 11248037 ~ 11261509 (-) False prelid3a
XM_021586929.2 mRNA downstream 377148 11165113 ~ 11168638 (-) True lratd2b
XR_005035048.1 mRNA downstream 486313 11058984 ~ 11059473 (-) False LOC118937688
XM_036938110.1 mRNA upstream 9218 12299928 ~ 12304949 (-) False osr2
XM_036938107.1 mRNA upstream 9218 12299928 ~ 12304950 (-) True osr2
XM_036961628.1 mRNA upstream 144759 12435469 ~ 12445157 (-) True LOC118944056
XR_005035115.1 mRNA upstream 258589 12549299 ~ 12553519 (-) False LOC118937718
XM_036938124.1 mRNA upstream 258590 12549300 ~ 12553519 (-) True LOC118937718
TU130157 other downstream 193045 11349342 ~ 11352741 (-) False G113733
TU130159 other downstream 193045 11349342 ~ 11352741 (-) True G113733
TU130124 other downstream 220174 11323041 ~ 11325612 (-) True G113720
TU130103 other downstream 233128 11310843 ~ 11312658 (-) True G113712
TU130068 other downstream 327632 11210473 ~ 11218154 (-) True G113688
TU131242 other upstream 293317 12584027 ~ 12585140 (-) True G114390
TU131258 other upstream 319959 12610669 ~ 12613680 (-) True G114402
TU131298 other upstream 417117 12707827 ~ 12709315 (-) True G114424
TU131319 other upstream 444604 12735314 ~ 12739157 (-) True G114442
TU131498 other upstream 801382 13092092 ~ 13093765 (-) True LOC110507534

Expression Profile