RNA id: TU129229


Basic Information

Item Value
RNA id TU129229
length 596
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G113102
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 11024601 ~ 11030013 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtttatagggttaaggttaggagttagtttaaagggttaaggttaggagttagtttaaagggttaaggttaggagttagtttaaagggttaaggttaggagttagtttaaagggttaaggttaggagttagtttaaagggttaaggttaggagttagtttaaagggttaaggttaggttaggagttagtttaaagggttaaggttagagttagtttaaagggttaaggttaggagttagtttaaagggttaaggttaggagttagtttaaagggttaaggttaggagttagtttatagggttaaggttaggagttagtttaaagggttaaggttaggagttagtttaaagggttaaggttaggagttagtttaaagggttaaggttaggagttagtttaaaaggttaaggttaggggttagtttaaagggttaaggttaggagttagtttaaagggttaaggttaggagttagtttaaaaggttaaggttaggagttagtttaaagggttaaggttaggagttagtttaaagggttaaggttaggagttagtttaaaaggttaaggttaggagttagtttatagggttaaggttag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129227 lncRNA downstream 79 11024084 ~ 11024522 (-) True G113101
TU129218 lncRNA downstream 5777 11018362 ~ 11018824 (-) True G113094
TU129214 lncRNA downstream 15018 11009106 ~ 11009583 (-) False G113091
TU129215 lncRNA downstream 15018 11009106 ~ 11009583 (-) True G113091
TU129209 lncRNA downstream 17283 11006692 ~ 11007318 (-) True G113089
TU129233 lncRNA upstream 3212 11028543 ~ 11029434 (-) True G113102
TU129235 lncRNA upstream 5788 11031119 ~ 11031321 (-) True G113104
TU129299 lncRNA upstream 29271 11054602 ~ 11055583 (-) True G113146
TU129296 lncRNA upstream 31803 11057134 ~ 11062038 (-) True G113143
TU129305 lncRNA upstream 32932 11058263 ~ 11059884 (-) False LOC118937688
XM_036937860.1 mRNA downstream 23479 10840566 ~ 11001122 (-) False LOC110511734
XM_036937865.1 mRNA downstream 23479 10840566 ~ 11001122 (-) False LOC110511734
XR_005035034.1 mRNA downstream 23479 10840566 ~ 11001122 (-) True LOC110511734
XR_005035042.1 mRNA downstream 143211 10879856 ~ 10881390 (-) True LOC118937685
XM_036937853.1 mRNA downstream 198589 10811513 ~ 10826012 (-) True LOC110512108
XR_005035048.1 mRNA upstream 33653 11058984 ~ 11059473 (-) False LOC118937688
XM_021586929.2 mRNA upstream 139782 11165113 ~ 11168638 (-) True lratd2b
XM_036937950.1 mRNA upstream 222706 11248037 ~ 11261509 (-) False prelid3a
XM_036937954.1 mRNA upstream 222706 11248037 ~ 11261509 (-) False prelid3a
XM_036938010.1 mRNA upstream 372761 11398092 ~ 11402862 (-) True LOC110514530
TU129220 other downstream 2867 11021041 ~ 11021734 (-) True G113096
TU129027 other downstream 216357 10736729 ~ 10808244 (-) True eif3h
TU129012 other downstream 305943 10648265 ~ 10718658 (-) True G112965
TU128973 other downstream 453793 10570442 ~ 10570808 (-) True G112928
TU128520 other downstream 677666 10346471 ~ 10346935 (-) True G112567
TU130068 other upstream 185142 11210473 ~ 11218154 (-) True G113688
TU130103 other upstream 285512 11310843 ~ 11312658 (-) True G113712
TU130124 other upstream 297710 11323041 ~ 11325612 (-) True G113720
TU130157 other upstream 324011 11349342 ~ 11352741 (-) False G113733
TU130159 other upstream 324011 11349342 ~ 11352741 (-) True G113733

Expression Profile