RNA id: XM_021589917.2


Basic Information

Item Value
RNA id XM_021589917.2
length 4602
RNA type mRNA
GC content 0.49
exon number 28
gene id LOC110508973
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 10878709 ~ 10895912 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGGACACTGAGAACAGCCTATCACTCCGATAGGCCAGAATAGGAATTCGGTCAACTGAGTCTAAATGAAACCACATCCCCTTCTTCAAACTCGCTGTAGGAGTAATTGATATCTTCTTCAAAGTAAACGACTGGAATATTACCCGTTTCAACAAATGATATACAAGTTTTGGGAACTAAAGAGACTCAAAGaatGGGCACCAACCCCCGCTGACATCAGCTTCATCTACAGCTAGAGCAGAGGAAGGGGCATCAAGGGGAATAGGGGGGTCATTTTCTGTAGAAATGGAGGAAGGACCATGTACAGTGGAGAGATGGATGAAATGGGAGTAGACATGAGTGTGAGAGGTCTAGATAAACTAGGTGGGTAGGTATTTATATATGAGGAAGAAGTGTATTGACAGACACACAGTTCATATACTCATATCAGCTGAGACCCATTAACTtatagatagagagggatggagtgtggaGAGAGTATCCTGTGTGGGTCTGGGGAGCTGGATCTGGACCCTGACATTGTGAGTGAAGAGGCTGGGAAACTGTACTCAGaactacagACAGTGATAGAGACCCATGGCGTAGGGGTTGTGGAGTCCCTGGTGCCCATCCTAGTATGGGTCCTGGAGGGTCTGGCCAGCTGCAGAGCCCAGCtccgagagagggaggaggaggccgaaagagagaaaggagagcgagatGAGCTATTGGAGAGATACCAGAGTGAGAAACTactgaggagagagagccaggagCGGTATCTGGAGTTGGATGACCAGATTGAGCAGGAGCGGAGGACaatgaggggaagagagaaggagagagagaggagggaaaaagaACTGGAGAAGAAGGCCAGAGAGCAGGCTGACCAATTGGTGGCCTTGGAGGAGCAGAGGGCTGGACTGGGCAGAGAGTTGAACACACTGAAGCACACTCACAACAAGttGGTGCTCAGTTATAAGGATCTGCTGGAAAGGAAAAgggatctagagagagagggatctcCACTAAGTAACCATGTGCGCTCCAAGAATTCACAATCTACCCAGGGCCAGTCAGAATCCTGTGTTAGCGGACAGGAGCTAACTGATCAAAGGCCAGAAACACCTCCTTGTTCTGTCCTGTTGGAAGAACCGGTAACCAAGGACGATAGGGTGATTGACATTGTCGTAAAGCCAGACAGAGATGCGTCCTTCATCAATGACATCATAAGCTCCACCCCTGAGCTGGCGAAGTTTCATGGCCTTATGAATGCCAGCACCCCGGTCCGAGCAGACGCCAAAGAGCCAATCAGAGACAAGACCAGCACGGGGGAAGAAAttaaggaggtggaggagaaggaaggagagaagaaggaggaggaggagaaaaaagAGGAAGGAGCAAAGCaggagaaggaggatgaggaggaggatatgGATAGTCTGGAATGGGAGCTGAGGAACACGGAGTCTGTGTTCTCAGAGCTGTCTGAGCTGAGTCAGGAATACATAGAGAGTGTGGACCAGGGGGCCAGTGTCAGAGGCAGCACCGACCAGTTTGAGGAGATTCTTTCTCAGTATGAGGAACTGAAACACACCCATGAGTTAGTGAATGCTGCCCGGAAAGCACTGATCTCTCGTGTGGAGGAGCTGACCAATGAGAGGTCAGCTCTTAAGGTGGAGGTGACTTCCTGCCAGGAGACTGTCACCCGATTGGAGGGAAGAatgaaggagatggaggaggaaaccAAGAGACTTCGGAAAGAACTGGAAGCAAATCAATCAGATGATGATTCCTCTCTGCCCATATCGCTGCGTCGGTTCTCTCGTTCGGAGATGTCCCGTGTTGTCATGGAGAAGAACCAGTATAAGGAGCGTTTGTTTGAGCTGCAGGAGGCTGTGAGACGCAGTCAGACCATTCGGGCAACCCAAGaagagagaatcactgagagagagaggactagtgtGTGGAGAAGATTCAACCGTTTGTTTGGCCTGAACAAGAACCCCTTGGTTCCGTCTGCTGCTCTAGCGCTGACCCTGCCGACGTCCCCGTCCCTCACTCATTCACCAATGGGGTCTCCACGGCAATTGGCTGTCAGTACGACTCAGACAGTTGGTGCCTCCCCTGCTACAGCCCTGTCTCCGCGGGTCAGGAGGAGGGAGCTGTACAGAGACATCCGCTCCCATGTCTGGGGAACCCTGGGAAAACGCCAGGTTCATGGCTGGAGCATGCCGCTGTCTCACACACAGGATTCCTCAGAGCCGACCCCTGAGCCCAAAGATGTGCCTGTCCTAGTGCAGCTCAGACTGATGGACCAGAGAGATTCTACAGCTAAGCTAAACTGTGCTGTTGCTGTTACACCTGAGATCTCAGGCGAGACAACGTGTGCAGTGTGGGTGGTCTCTGGTCCCGCCTCCAGTAGTGATGTCACAGTGATCAACCCTGCACGGTCCAATACGGTGCTGGATCAGTTCAGCCTCCCGCCCACCTCGCCCGCCCTATGCATCTGTGCTGTGCCCCCTACTGGTGAGACCTCAGGAACTGTGTGGATTGGAACTCAGGAAGGAAGTGTATTGGTACACTCCGCGTCCACAGCTAGAAGGCGCTGTCTgcagtctatctctctgtctgagggTGTGCACTCTCTCACGTATTCACAGGGTCATGTCATTGCTGGATTAGCCAATGGGACGCTTGCATTCTTCTCGCACAACCCAGGTGGATGGGATCTCCAATCACATGAGGTTTTGCCTCTGGGATCAACTCCACTGCAGCCCATTCGCTGTTGCCTAGCGAAGGGTGCGTACTTATGGGTAGGATATTGGAATCGGGTTCATGTGGTCGATGTCGAGAATAGAAAAGTGGAGCAAACTTTAACCGTCTCGGAGCGCAGTGAGCAGCAGGTGCGTTTCCTGTGTGCGGCAGGAAGTGGTGTGTGGACGTCCTGCCGGCTCGACCCTACACTTAGGCTTTTCGATTGGTCCACTGGCCGGCTCCTGCAGGATGTGGATCTGACCCCTCTGGTCACCAAAACACTGGgCCCTGCCTTCTTGTCTCTCTCCCCGCTGCAGATCTCCTCCCTCACCGTCATCTCTGGCCGGCTGTGGGTGGGAACAGGAAGTGGCGCCATCTTCTCCATCCCTGTGTCTCTCAGTTCAGAGTCTGCCTCTATACCATACTGCTCTTTGGCGGCAGCACAACTGTGTTACCATGGACACCGCCAGGCTGTCAAGTTCATCATTGCTGCACCTGGCTGTGTGACCAGCTCCTCTACAATAGGAGGCGGTGCTGTGACTCTAGTCTCTACCTCTCAACTCATTCTCAGTGGAGGAGAGGGCTACATCAACTTCCGCATCGGCGACGACGCGAATGACGGTGCGCCCGAAGCTGCCCCGCTGCGATCAGACCGCAGTCACATGATCATCTGGCAGAGCCCCACCCCCTCCCTGCCCAGCGCCGCCCTTTGACCACACCCACATCTAGTCTAGAATGAGACATGGAAGGATTAGACAGAGATGTCATACAAGAGACCAGGAAGTACAAATGGGAGCCATGTTTTAATGGGCTTCATTCACTAGGAGTTCCATTTGGATTTTTGTTCTAGAATTTTGGGATTAAATTAAGACATCGCAGCTTAATCCTTCTTGTCTCATTCTGTTATTCAGTTGCTACCCTCACCCCCTTGACTAAACCTTTCACCTGGTTAACCCAGTCTCCTCTGTGTGCCTTAATGTGATTTGACAATCGTTGCTGTGAGATTGGTTATTGTacaatgttttgtgtttttttgtgaaacaTGTTTCCTCATCATGGTAATCATAtatgggcagcaggtagcctagcggttaagagcgttgggccagtacccGAAAGATCGCTGGTTTGAAAACCTAAGCTGACTAGGTCAAAAATCGGTCTGTGCACAAGAGCAAGGCGCTTAACCCTAATTactcctgtaaatcactctggataagagtgtgtgctaaatgactcaaatgtaaatatcATCATCACTGTAGCAAAGTATTTTACAGTAAGAGTCATCATCTCTGACTTTTGGTTGGTCAGTTAAGAATGGTTTGGGTTTGTTTTAACCACAAAACATGCACACTCAGTAGCATATCATTCCATGACGTTGGCACAAGGCATTATACCCTTGTTCAAACTCGTTTACATTGATACTGAGATGTAGTGTTGAAGCTGCTGGGTTCATAATAACTATTCTTGCATAAGACCCTGGCCTTCAGTTCCCATTGCATGCTGGGTAAATCTGCAGCGTAATTGCACTTtattatcgtgtgtgtgtgtgtgtgtgtcttaaatCTTTTGAAATGATTGGCTAATCCTCTTAAAGATCCCAGAGAAATGATCTTATGTCTGCTCGTTATGACTTTGTGAAACACACATGGTTTgttaaaacaaaaaaatgtaagttTTCATTTGCAGAGCGATAAGGGAGTGGAAGTCTCAAAAGATACTTAAAGTATTTTATGCCGGTTttgaaagtgtgtttgtgtgtgtgaatcatGTCTGAAAATGTTCATCATAACTGGACTCTATGCAAGATAATCTGTATCTACTTAAATCTATGAAAAATAAACTTTGGGAAATACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU255675 lncRNA downstream 29356 10848946 ~ 10849353 (-) True G223703
TU255674 lncRNA downstream 30005 10848408 ~ 10848704 (-) True G223702
TU255660 lncRNA downstream 49399 10827408 ~ 10829310 (-) True G223688
TU255616 lncRNA downstream 98733 10777881 ~ 10779976 (-) False G223652
TU255679 lncRNA upstream 6649 10902561 ~ 10902795 (-) True G223707
TU255682 lncRNA upstream 14324 10910236 ~ 10910496 (-) True G223710
TU255683 lncRNA upstream 15359 10911271 ~ 10911708 (-) True G223711
TU255689 lncRNA upstream 22777 10918689 ~ 10920990 (-) True G223717
TU255701 lncRNA upstream 48607 10944519 ~ 10944813 (-) True G223723
XM_036968625.1 mRNA downstream 2580 10865535 ~ 10876129 (-) True LOC110508957
XM_036968608.1 mRNA downstream 13447 10853702 ~ 10865262 (-) True LOC110508966
XM_036968606.1 mRNA downstream 13448 10853702 ~ 10865261 (-) False LOC110508966
XM_036968615.1 mRNA downstream 13448 10853702 ~ 10865261 (-) False LOC110508966
XM_036968611.1 mRNA downstream 13449 10853702 ~ 10865260 (-) False LOC110508966
XM_036968647.1 mRNA upstream 32083 10927995 ~ 10936251 (-) True si:ch211-149k23.9
XM_036968666.1 mRNA upstream 41530 10937442 ~ 10941795 (-) True LOC110537203
XM_036968678.1 mRNA upstream 54221 10950133 ~ 10968496 (-) False epn1
XM_036968693.1 mRNA upstream 54221 10950133 ~ 10968496 (-) False epn1
XM_036968701.1 mRNA upstream 54221 10950133 ~ 10968496 (-) False epn1
TU254793 other downstream 855506 10020648 ~ 10023203 (-) False LOC110508724
TU254794 other downstream 855524 10020648 ~ 10023185 (-) True LOC110508724
TU254805 other downstream 863817 10012961 ~ 10014892 (-) True G223070
TU254786 other downstream 875815 10001415 ~ 10002894 (-) False LOC110508696
TU254343 other downstream 1195338 9679908 ~ 9683371 (-) False LOC110534283
TU255954 other upstream 175034 11070946 ~ 11073750 (-) False znf628
TU255996 other upstream 276208 11172120 ~ 11174367 (-) True G223942
TU256045 other upstream 380005 11275917 ~ 11278628 (-) False G223969
TU257101 other upstream 831450 11727362 ~ 11741584 (-) True LOC110509576
TU257113 other upstream 856939 11752851 ~ 11753680 (-) False G224869

Expression Profile