RNA id: TCONS_00028811


Basic Information

Item Value
RNA id TCONS_00028811
length 4659
RNA type mRNA
GC content 0.39
exon number 1
gene id XLOC_014575
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 9771417 ~ 9776075 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gggttaagttacttgaagaccgacgggttaacatcactgctcaggaactgcactattcattgtcttcaataaagtcttctctccgtaagaactttggtcagcttacttattttatgtgttagagtaatctaatacattggcgagccccccaagaacggttaagccaaatacagcaaaatctaacaatTTGGCGAAGCCAGCCAGGAGAGACTGAAAAGAGGAAAACTCATCAACTGCAACAAGAAATGAATTGAAGAATCTTGGAGAATCTACAGTTAAAGCTGAAGATAAACGGATTTTGTTTGTGGACGAGTCCTGGATCTACATATTGTATCTGTGGACACCCTTTATTTTAATCAACTGGATCTCATCTCAAAGATCCTAGTTTGGTGAGTGAAACTTATCAGCTCTCTTAAAGAACCCTTAAAAGAAACATCTTTTATAAGTAACCATTAAAGTAAGCAGATCGACCTGTATATGTAGTGCAGTAATAAACTAAATACAGTGATAGTATTGCTGAAATTTCAGGCTTTCTCTTGATATTTGCAGAAATTGTAAAAGAAACAATTTGTCCATTTATCAAAAGATTTTGAAAGAGCAGTGGAAATTTTAGGCTTAGTCCATTCTCAGGGTACTTGTaggaattatttaaataatttggtCCTTTCTCATGGAGATTGTAGGAATTGTTGAAAATAATTTGGTCCATTTCCCCAGGGGACTGTAGGAGCCGTAAAATAGTTTGGGACTGATGTTGCTGCAAGAATTAGGAATTCTTGACTGGGTGCTAATTCAGTAGCCACTATTTTAATTTTGAAGGTAACAGAGCCTTCTGTGATAGAAATCTTAAAACATTGTAGGTTTGGTTCGTTTTCTAGAGTTTGCATGAACTGTTAAATAATCATTCTGGTCCAATCACTAAGATTATGCAGAAGCAGAGCTTGGTCCATTCTCAGCTGTGATTGTAGAGATTGAAAAATAACAGTTTAGCTTATTTTTCCAAAGATGGTTATGAGCCATATAAAGCAAACATAAAAAGTTTGAGACTGATATTGCTGCAAGAATGAGGAATTCTTGACTGTGGGCTAATTCAGTAGccattattgtaattttaaaaattctaACTGTTACAATATGATGGCATAAAACTGAAAGCTGTTTGCCTTAGGTTTAAGGATACAGTGAGATTTAAGCACATTGTATTAGGGACAAATCCTAAAGAAAGTTACTTAGCCTTCTAAGATAATGCTCAAAAAGAATTGTTATTAGACAGAAGCTTTCAGGCAATTTTAGGCTTGATTCTTGCTTTGAAGATTGTAGAAACTGAAAAAATAATTCTGGTCAAATCACTAAGATAATGCAGAAGCAAAGCTTGACACATTCTCTGTTGGGATTGAAGAGATTGTAAAAGTAatagtttaatacatttgttCAAAGATTGTTAGTAGCCAAATAAGATTTGGGACTGAAAGAATGAAAGTGGTAATTTAGTAGCCACTATTttagctttgaaacaaatgttgAATAATGAAAGTGCTAATTTAGTAGCCACTATTttagctttgaaacaaatgttgAATCTGTCTATGTATTTGTAATGGTTTAACAGACTGCTgttaatttaaatttgaataagCACCTTTATTAGCTCTAACACCTTTTGTTCTGTTTCACACCTCTGAGAGCACTGTCCTGTACTTCCCATGGCTGAGTCTTCAAGAAACTATGCTAATGGAGCTACCCTGAGAACAACATCAGAAAAACATGGAACAGAACCTCCATGTGTTACCATTGACCAGATGTTGGAGAATTTGAATGCATATTTAGACAAAAGGCTGGGACTGAGGAAGTTTCGTGATGATGTATGCAAGAAGTACAGCATCAAGCACTCAGGGAGTGGATTATGGGCATTGCTGGACATTAAAAGGGCTTATGGAAAGACACAGCGCTTATGCACAACCACCAAGAAGGATGGATTGTCTGTGATTTTGGTTAAGCAAATTCTTCAACATGAGCATAAGTGTGAGACTGACAGATTGGAACGTGAGAACAAAGCGGAGAAAGCTAAAGTTCGAGCACTGGCTGAACAATTGCAAAACTTAAAGGCGCATAAAGAAAGACTGGAAAAGGAAAACAACAAGCTATTGACTTTGATCTCCAAACAGCTGGAATCAAGATCTTCAAGCAGCTTTGTTGACAGTGAGGCTGATCTTTCCATCAACACCTGTGTTCATGACCCAGTGAACTCAAAGATTAGATTAGCTCCTGTGATTGTCAAACACAGAAGGACTAACGTTGAAATTGACAATGAGGAGGGCTATGAAGACAATGGAGAGAGACGAACTCGCACTGTGAAAAAATTGGTAAAGAAGTATGTTCCATACAGGACATACCATCCAGCAACTCCAGAGCAAGTTGACAAATGGTCAAAAGAGCTGCCAGATGTATACAAACAACCACGAAAGGTTTGGCAGTTTCTTCAACGACTGCAGAAAATCTACATTTTACATCCACTAGACGGTGTGATGATTCTTAATGTCACCTTAAGAGACAGTGACCAAAAGAGACTTACAGAAAGTGTTGAAAGAAGGATTGGTGAATCACAAGAAAACATAGAGGATGGATGGGAAGCCATAAAAAACTTCTTGTTTGAACTGAAACCTGCAGAGGTCAATTGGGCAAGAATTACCTCATGCATGCAGAAAACTGGAGAAAGTGTTGCAGAGTTTGAAGAACGCTTCAGACATATATGGACGGAACATTCTGGTCTGAATACAAGTGAAGATCTTGACAAAGACACTGGAATTCCCCTGAAAACAGCATTTGTCAATGGACTCAATCCTGAGATTTCTAAAGATCTTAAAATCAGGTATGATGACTGGGACAGCACTGTAACAACTTTCATCCAGATTGTTGAAAGGTCAGCTAAACTGGAGAGAGCACAAGATGTCAGACTCAGATCTTTGCAATCGGAAAGTTTGTTTTACAAGAACAGAAGAATTGAGGATGAGCAAAAAGAACGTGAGTATATGGGATACTCAAAACTACGAACTAAAGGAAGATGCAGGAATTGCAATGAAGAAGGACACTGGGCCCGTGAGTGCAAGCTCAGTTTAAAACATCAAAGCCATGATGATGACCACCTGTTCAAGCTGTTTCAGCAGCTAACAATACAGCAAAAACAGACTCTGCTAAATGCTGTACAGCCGCAGGGAAACTGAAGAACCTCTCTCTGCAGCACCAGCTAGTGACGTCTTTTCCAGAAGCTGATGAACTGAATGTGTATGCAAACAATAGGGTAAAAGCTGACACAGAAGTCTCAACAGATGAAAACAAGTTTGATGTCCTAGTAGATGGTGTTGCCAAACAAGCCGTAAAGGAGAGAGGTGAACATACAGCGGCATTAAGACAGCTTCAGCAAGATCACCGATCATTCTTAGACAGAATGCAGACTGCAAATAAAAATTCAACAAAAGAAATGCTGATGGACGATGCAAAAGAACTGCGTGATGGCAACCAATGCAGTATGGATGGAAACAGACTATGCCCTTTTGAACATGCCCCAAGCCAGCCCATGTCCACTGAAAACCTGACATCTGACAGCCTTGTCCAAAATGAAGCAAGACTCAGCCTGGCCGTACATAAGGACATTAATCAAGTTTTGTCACCTCTAGAGAGGGGCCATTGTTTAGAGCCCAGTAAATGGGTAAAGACACGACAACCTCAGAAACTACCACTAAAATCCAAGTGGAAGAGCTCACTTGAGAAAGTTTTAGTATCTGATTCAATAATTAATGTTCAGGGACTTGATGAATGGATCAACGTGAGTTTGCCTAGAGACGAGGGATAGATGACAGTAGTGTTTTTCAGAGTCCAGATATGGCGGGACTAGAGTTTTTAGGCTCTAGCTTGTCGCCTGAGGATGAAGACATTAACCACCACTGATAAACACTGTAGTGTCCTGTCAATATTAAATAGGGACAGTTTCTATACTTTCTATAGGCAGCTTGAAAATTTCTCTGAAATCTTTTTCTGGGCAAGATACGTTTCCCTTTTCGCTTTTGTGTGATTGCAGGTGTTCCAGAGGATGACCAGAGACACACAACACCAGACACCTAGATGAACACACCTAAACATCCACAGAACACAACCACATCCTGCTACTTCTACAACATTACAACTTCAAATAGAAATGGACTCAGGCATTTGAGGAAATGCAAGCTTCACCATGCCTTGTTATTCTGTCACTTTAAGTTATATAGCCTGTATTGCAGATTGCTGTATACATGATTAACTTGTTTTATGATCAAATATGATCAGAGGAGGGATTGAAagattatgtgcattttagttcagttgcatttacattgattaaactCTGATGTGATATGATGGGGTGACCTGTGCCTCGACCCCCACAAACTGATAGGTGTGAACTAAATGACCCTTTTACAATCTCAATGGGTATTagcaaaacaacagctgaaacatctgaagagggtcctgctgagcttcgtaaacagaatggtttgtttgatgctagtataaagtactgtctcacagacagtactttgggttaagttacttgaagaccgacgggttaacatcactgctcaggaactgcactattcattgtcttcaataaagtcttctctccgt

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000140332

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00028805 lncRNA downstream 87909 9676517 ~ 9683508 (-) True XLOC_014572
TCONS_00030166 lncRNA downstream 161905 9594867 ~ 9609512 (-) False XLOC_014570
TCONS_00030167 lncRNA downstream 162042 9605861 ~ 9609375 (-) True XLOC_014570
TCONS_00030165 lncRNA downstream 311088 9457546 ~ 9460329 (-) True XLOC_014566
TCONS_00029756 lncRNA downstream 372951 9391235 ~ 9398466 (-) True XLOC_014565
TCONS_00029757 lncRNA upstream 128249 9904324 ~ 9906939 (-) True XLOC_014578
TCONS_00028835 lncRNA upstream 537852 10313927 ~ 10318962 (-) True XLOC_014586
TCONS_00028866 lncRNA upstream 1083047 10859122 ~ 10860449 (-) False XLOC_014603
TCONS_00028865 lncRNA upstream 1083119 10859194 ~ 10864799 (-) False XLOC_014603
TCONS_00028870 lncRNA upstream 1099658 10875733 ~ 10876830 (-) False XLOC_014603
TCONS_00028809 mRNA downstream 10423 9732084 ~ 9760994 (-) False XLOC_014574
TCONS_00028808 mRNA downstream 58887 9685214 ~ 9712530 (-) True XLOC_014573
TCONS_00028807 mRNA downstream 59945 9685165 ~ 9711472 (-) False XLOC_014573
TCONS_00028806 mRNA downstream 59945 9685165 ~ 9711472 (-) False XLOC_014573
TCONS_00028803 mRNA downstream 108459 9612163 ~ 9662958 (-) False XLOC_014571
TCONS_00028812 mRNA upstream 37212 9813287 ~ 9829965 (-) False XLOC_014576
TCONS_00028813 mRNA upstream 41045 9817120 ~ 9829965 (-) True XLOC_014576
TCONS_00028814 mRNA upstream 64696 9840771 ~ 9882821 (-) False XLOC_014577
TCONS_00028815 mRNA upstream 65946 9842021 ~ 9867001 (-) True XLOC_014577
TCONS_00028816 mRNA upstream 133887 9909962 ~ 10043142 (-) False XLOC_014579
TCONS_00028791 other downstream 918762 8852540 ~ 8852655 (-) True XLOC_014556
TCONS_00028774 other downstream 1945884 7825395 ~ 7825533 (-) True XLOC_014543
TCONS_00028762 other downstream 2303101 7468201 ~ 7468316 (-) True XLOC_014531
TCONS_00028751 other downstream 2493824 7276060 ~ 7277593 (-) False XLOC_014526
TCONS_00028719 other downstream 3532428 6232164 ~ 6238989 (-) True XLOC_014509
TCONS_00028818 other upstream 236423 10012498 ~ 10012614 (-) True XLOC_014580
TCONS_00028819 other upstream 347158 10123233 ~ 10123347 (-) True XLOC_014581
TCONS_00028825 other upstream 462378 10238453 ~ 10242111 (-) True XLOC_014584
TCONS_00028853 other upstream 860294 10636369 ~ 10646822 (-) False XLOC_014597
TCONS_00028860 other upstream 916091 10692166 ~ 10730478 (-) False XLOC_014599

Expression Profile

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