RNA id: TCONS_00028826


Basic Information

Item Value
RNA id TCONS_00028826
length 6447
RNA type mRNA
GC content 0.42
exon number 17
gene id XLOC_014585
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 10252052 ~ 10295173 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGAAGAAGGCATGAAGAAAACATCATAGTCAAGAAGTCATGGCTGATAAAAGAAAACTTCAAGGTGAAATAGACAGATGTTTGAAAAAAGTCACAGAAGGGGTAGAGCAGTTTGAGGACATTTGGAAAAAGctCCACAATGCAGCCAACGCCAACCAAAAAGAAAAATACGAGTCTGACCTCAAGAAAGAGATTAAAAAATTACAGCGCCTTCGTGACCAGATTAAGACATGGGTCGCCTCTAATGAGATCAAAGACAAAAGACAGCTTGTGGAGAACCGCAAACTCATCGAGACGCAAATGGAACGGTTTAAGATAGTGGAGCGGGAGACCAAAACGAAAGCGTACTCTAAAGAGGGTCTCGGCCTTGCTCAGAAAGTCGATCCTGCACAAAAAGAGAAAGAGGAGGTCGGCCAGTGGCTAACGAACACAATAGACACATTGAATATGCAAGTGGACCAGTTTGAGAGCGAGGTTGAATCGCTTTCTGTCCAGACCAGGAAAAAGAAAGGCGACAAAGAGAAGCAGGATCGGATCGAGGAACTAAAGCGATTGATCGAGAGGCACCGATTTCACATCCGCATGCTGGAAACCATCCTTCGAATGCTGGACAATGACTCGATACAGGTGGACTCCATCCGCAAGATTAAAGATGACGTGGAGTACTACCTTGATTCCTCTCAGGATCCTGACTTTGAGGAGAACGAGTTCCTCTATGATGACCTTGATTTAGAGGAGATACCCCTGCCAGTAGTTCCCACGTCTCCGGCAGGTCACCCAGACGATGAGATCTTCCAGCACTCCAGTTCTACCCCGACCTCCACAACGTCCTCTTCTCCCATTCCTCCCTCTCCGGCAACTTGCACTACGAATTCGGAAGATGAAAAGAAAAGGGGTCATTCGACAGACAGTGAAATCAGTCAGTCGCCTATCAAGAACGGTAACCAGTCTTCATCTCTGTCCTCGTCTTCTTCACTGTCCTCCTCATCCTCGGGAGCCTCTTCCATTTCTCTAATCTCAATGGCGACTCTGGCCAGCAGCGGGAGCTCTGCATCAGGTAGCAGCAGTCTCTTGGGTAACATCAGCGTTCCCCTCCAGAACTCTGGCAGCTATAGTTCAGCAACCCAGCAACAAACACAGCAATCCCAACAGCAGCACCAGCCCAAAAACTCAGCCTCCTCCCACTCAAACTCAACCTCGGCCAGCAACAGCATCTTGCTCCCAACATCCACCTCCACATCCCCACCCAACACCAGCACACTGGGCCCCCTGACGCCCAGCTCTCAGAGCCAGACCAATTTGGGAATGAGTCTATCTTCCAGTCTTGGCCTTGGGAAGGGGACTTCAGCATTGACTGGCACAAACCAGATGCCTAGTCTGGTTCTCTCAGGGATGCCGGCATCCTTGAGCGGGTTTTTGAGCGGATCCACCCCGGCGCCTTATGCACAAGCGGCTGCCGCAGGTTGTGTGGGCAGTGGACTGTCTTCAGCGATCGGAACCAATATTAGCAGTACAAACTCCAGTGGAGTGGTAACCTCGTTGGGGACTAATGGAAGTCTGGGCTCCACGAGCCTCTTGGGTTCTGGGTCTGGCATTTTGGGCCTTGGGTCTACATTCGCTGCTGTGGAGCCTTTGCCTTTGCTAGCTCCCAGTCCTGTGGGAAGCACACTGACCTCAGGGAGCAACGTGGGAGTTATTGGAAGTAGCGGAGGGACCTCTGGGACAGCGAACGCAACAGGAAGTGGCACACAACCACGACCACCTAGTGGACCAAAACAAAATGGTGGTTCAAGTTATAGTGCTGTGGTAGGAGACAGCACATCAGACTCCGCCCTCAACAGTGCCAGCCAATCACAGAACAGCCAATCCTCATCCTTAAATTTAGCTGTAACAAATCAGCTTATGGACAGCGGGTCCAGCCTGCTGGGGTCAATGACACTGGCACCCAGCTCGCCCTCACCGGTGTACAGTGAAAGCAAAGCAGGCGGTGGAAGCCTGCTGAACGgcccacactcatacacacagccTGCCGACACCATCAAGCCTCAGGAGCCTCCAAGCTCTCTAAAGTCAATGGCAGAGCGAGTCGCTCAAGGCTCAGGGTTAGACGGAGAGCTGTCTGCACTACATATCCCCAGTGATATATTCCCAAGCTCCACGGCTCCATCAGGCACTCCTGCAGCTCCACAGTTGTCTCTGTCAGAGGTCAGTATCCCTCCATCATTGGGTGTGTGTCCACTGGGCCCCGTTCCGCTCTCCAAAGACCAACTCTACCAGCAAGCCATGCAAGAGTCTGCTTGGGCACACATGCCTCACCCGTCCGACTCTGAGAGGATCAgGCAGTACCTAATGAGGAACCCCTGCCCAACACTGCCTTTTCACCACCAGATGCCACCTCCTCACTCCGACAGTGTGGAGTTTTACCAGAGACTGTCTACCGAGACCCTGTTCTTCATCTTTTACTACTTAGAGGGCACAAAAGCGCAGTATCTAGCAGCCAAAGCCTTGAAAAAACAGTCATGGAGGTTTCACACAAAGTACATGATGTGGTTCCAGAGGCACGAGGAGCCCAAGACCATCACAGATGAGTTTGAACAAGGGACATATATTTACTTTGACTATGAGAAATGGGGCCAGAGGAAAAAGGAAGGATTTACGTTTGAGTACAGGTACCTGGAGGACCGAGACCTTCAGTGACGGATGGTCAACTAGAAAGGAGAAGGACTACTGTCGACATTCCGGACtgaatcaaaacacacacacacacacacacacatgtacactctCTTTTATTCATCGCGGAGGAGAGCCAGATGCACATGCGAGGCTGTTTTATGTCTCGCTGGTGCAAAAATGCATCTGGAGCCCCTCCCTTTCTTTACAATCACACCTTCCCATTGGCCACTCCCTTCGTGACTCCGCCCTCTCATTCAGTCAGACTTAACGACAGTACATCGGAAATTTAtggagcgtttttttttttgcgccaAAGAAGTTGATTGTGGTCAAATAAAGCATTCAGCTCTTTCAATAAGTTGATAGCAAATTGGTGTGAATTATTTAGCTGTGGCTAACATTCTGCCATTATATCAGTAAAATAAAGCCAaactaatatgatttttttagCAACAGATGTTtggtttaaagaaaataaatgattgggCACAACTGTTTTTTCTGCTTATAAAGGGGTTCACCAAAGCCATTACATGTTTCTCTTTAGGAAGCTTGTTTTATTGTCGAGTTAAACCCTTGTATTACTATTAAAATCAAAGCACAGTCATCACGGGatagtttttttaaaacttgtttaTTCATCctgattttaattcaatttacatACCACAGAATGATAGCGTTTGGtggaaaaacaaaccaaaattttacgttttatttaacaaaaatcctGATTTGACCCTTAGTTGTCATGCATGACTATATTTTCATGAGACTATTAGGAAAGTCCCTTTCAATCAAAGTCTGTTCACGCGACGACCATATGTGCAAGTCCTCCAGGCAGTTCATTCAAAGACCAAAGTCCAATCTGAATGATTATGGGACTCCTGAaatctcaaaataaaaaacaaaaacacttactGAAAGCtctaattacatttaaaactCTTTATTTCCCATTTTCTCCAGCTACAGCGTGTGCGCAAAGATACACTGGTCTCCTTTTATGGATTTTTTAATGGTAACCAGAGCACGTGGTTGTATATACTGGAATAACAGAGAAAATCTGGGGCAAATAATTGGCGATGGCACTGGAAGGACAAGATATGTGCTGTGATGTCAAAATCACCCGTTACTCCTCAAACAATTAGAGGTTTTCGTAACGAACAAGTGAATCTGTAAAGACTCCTCCCACAGAGTTTAAACATGCGATTTTATGTCGTATgacactgcgaaaaggggcgggattaaaccagatgattagacatttaaaaaaagcgagcgattagtccatattttaaatgtttgtacagagaggtcatgtttggaTCTTTGATTGGCCTCACAtagtcatgtgatgcgattttgtGGGTCTGAGTAACCAAGCCTAAACTTTGCAACAAAACTTGCCGCAAAAGTTTGTGTTTCTTGTTGCATTCgcttgcgtatgaatggaagtctatatggccaaaagtgcagtgtgaccgctgCTTAACAATTGGCTATTTCTTATGGAGGTGGGACTTTTTAAACTGTTGACTTTAGAATTGAGCGTATAGCTGTAGTTTTTGCTATTCGTACTTgatttccaaacctgtttgttgAGTGAAATGGACTGAAATCATACACTGATAGCATCACGATCAGGATTTTAGTTAAATAGTATGTTAAAATGTTGTTTGTCTCTCACCAAAACCCCTGAGCACATAGAATATATAATGTGTGTAGCATGCTGTTACACTTTAGGccatattttttaagttttaaagggttagttcacccataaatgaacaTTCATCATTTACGATCCCTCATGTGGTTCCaattagggctgggccgataaacaatattatatcgaatcacAATAAAAATTGATGTGAATAacgatgataagctctggactttttactCCATATTACTCTAAGAGGCAGTCACACAGCAAAAATGTGCAAtgagaatctaaaagtgtgttgaaatTAAAGATGTGCCGAATATTCGCCCACTGAAATCATATCGAACTAGAATATGTtttgccatttaatggaccctctaatatTTGTAACTTCAGTCATTGTTtggatactcttttaaatctggaagcattaacaactgatatcgaaatatgtatcgttatcgttcaatatggaaaataactgTCGAgactgcatttttgccatatcgcccagccctagttccaaccctttattagtttctttctttacaagtctactgaacacaaaagaagatactttgaaaaatgttgaatgcTGCTAGTCACTGACATCCATATTAAGGGGAAAAAAATGAGTATGGAAGTTAACGGTTCCTGCTTTTTTCAAAACTCTTCCGTTCAtcagaaggaagaaactcaaatatgttCAGAGTGAATCAGAAAATgatctttgggtgaactgtccccttGTCTATTTATGAGCAGGACATTTTTAGGtccaattaaataaaacaggAGCCAATAGGCATTACTAGAACAgcagagtgagtaaataatgaccatcattttagggtgaactatccctttaattcataCAGATAAGCTTGTAATACATGTCCTAAATGCTAATGTTGATCTTCTAATCATGTTATCACTGTGGAGCCCAATAATCAGTTTCTTGAACCAGCGCAAACACGTTATTTGGACACTCGGATTTCTATCGGCAAAAATACACagatatttttccttttttctgcACTCCGAAAGGGAATTAATGAATATGATCGAATGTTTATCTCCATCTGAAACTCTTTTGAAAGCAGATTTCTCATTTCGCAACttgcccagcaaacaattttgtgtttattagatGTCAAACAGACATCTacacgtagacagcttggctaatacaagactaaacttgggctgtcagtgaaaatctaatactagtcgtcaaatagacagattagacagactttatatgtgtagtcattcaattctgtttatttgacgactagtctagttttggcctattcttagatgtcttttcactgacagcccaaatttagccttgttttagccaagacaacgatgtttagacatctattagacatctattagtcgtcttttcaaaacaaaaaaatgcttgctgggttcaTTTGAGTGGCGGTTTTATTAGAAAGGGATGTGGTTGAAATTTTGTTTCAATTCAGAACGTATTGGGCATTAAAATACTCAACCTTATTTTATCTAAATGATTATATttccggtcacactttacaatcaggTTTCATTAGGTaatgtattcactaacatgaactactaaagaacaatacttgtacagcatttaataatcatagttcGACATTTActaaatccaaattcatgcttgttaactttAAGTTATTGCACACTTTTCTTCTATTAACGTcaagaaagctgaataaatactgtaataaatgtatcgtTCACTGTTTATTCGtgttagtgaatacattaactaatgcagccttactgtaaagtgttgcCATCTTTCCTAATGAGCGAATGGAAGAGAGTAGAAATGTgaattatacataaatattttttcctACCTGGAAAAGTGTTGTACAGAACATTTGTTCTTCTGTTGacctccccccccccccatccctcCATTTAAATGGCATGGAAAATCACGCTTTACAAAGTGGACTggagtaaataataaaacattgcaatgtaaaatataataaaagaattacttaataaaaacaaacaggacGTCTGGGTTTTCATCATCGCCGAGCATCTGTTCTGAATGACATCGTTCTCTTGAG

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0017148 negative regulation of translation biological_process
GO:2000036 regulation of stem cell population maintenance biological_process
GO:0000289 nuclear-transcribed mRNA poly(A) tail shortening biological_process
GO:0000932 P-body cellular_component
GO:0005634 nucleus cellular_component
GO:0030015 CCR4-NOT core complex cellular_component
GO:0004535 poly(A)-specific ribonuclease activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5838 Predicted to be involved in nuclear-transcribed mRNA poly(A) tail shortening and regulation of stem cell population maintenance. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in cytoplasm and nucleus. Predicted to be part of CCR4-NOT core complex. Predicted to be active in P-body. Is expressed in several structures, including gut; head; heart; integument; and testis. Orthologous to human CNOT3 (CCR4-NOT transcription complex subunit 3).

Ensembl:

ensembl_id ENSDART00000027316

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029757 lncRNA downstream 345113 9904324 ~ 9906939 (-) True XLOC_014578
TCONS_00028805 lncRNA downstream 568544 9676517 ~ 9683508 (-) True XLOC_014572
TCONS_00030166 lncRNA downstream 642540 9594867 ~ 9609512 (-) False XLOC_014570
TCONS_00030167 lncRNA downstream 642677 9605861 ~ 9609375 (-) True XLOC_014570
TCONS_00030165 lncRNA downstream 791723 9457546 ~ 9460329 (-) True XLOC_014566
TCONS_00028835 lncRNA upstream 27699 10313927 ~ 10318962 (-) True XLOC_014586
TCONS_00028866 lncRNA upstream 572894 10859122 ~ 10860449 (-) False XLOC_014603
TCONS_00028865 lncRNA upstream 572966 10859194 ~ 10864799 (-) False XLOC_014603
TCONS_00028870 lncRNA upstream 589505 10875733 ~ 10876830 (-) False XLOC_014603
TCONS_00030168 lncRNA upstream 933533 11219761 ~ 11227568 (-) True XLOC_014612
TCONS_00028824 mRNA downstream 8904 10217598 ~ 10243148 (-) False XLOC_014584
TCONS_00028823 mRNA downstream 37787 10206515 ~ 10214265 (-) True XLOC_014583
TCONS_00028822 mRNA downstream 37788 10201170 ~ 10214264 (-) False XLOC_014583
TCONS_00028821 mRNA downstream 44949 10201170 ~ 10207103 (-) False XLOC_014583
TCONS_00028820 mRNA downstream 55682 10177115 ~ 10196370 (-) True XLOC_014582
TCONS_00028828 mRNA upstream 12774 10299002 ~ 10324318 (-) False XLOC_014586
TCONS_00028829 mRNA upstream 13509 10299737 ~ 10324573 (-) False XLOC_014586
TCONS_00028830 mRNA upstream 14708 10300936 ~ 10306910 (-) False XLOC_014586
TCONS_00028831 mRNA upstream 20271 10306499 ~ 10323845 (-) False XLOC_014586
TCONS_00028832 mRNA upstream 20634 10306862 ~ 10323969 (-) False XLOC_014586
TCONS_00028825 other downstream 9941 10238453 ~ 10242111 (-) True XLOC_014584
TCONS_00028819 other downstream 128705 10123233 ~ 10123347 (-) True XLOC_014581
TCONS_00028818 other downstream 239438 10012498 ~ 10012614 (-) True XLOC_014580
TCONS_00028791 other downstream 1399397 8852540 ~ 8852655 (-) True XLOC_014556
TCONS_00028774 other downstream 2426519 7825395 ~ 7825533 (-) True XLOC_014543
TCONS_00028853 other upstream 350141 10636369 ~ 10646822 (-) False XLOC_014597
TCONS_00028860 other upstream 405938 10692166 ~ 10730478 (-) False XLOC_014599
TCONS_00028862 other upstream 419231 10705459 ~ 10705475 (-) True XLOC_014600
TCONS_00028867 other upstream 572989 10859217 ~ 10860466 (-) False XLOC_014603
TCONS_00028885 other upstream 907021 11193249 ~ 11193363 (-) True XLOC_014611

Expression Profile

//