RNA id: XM_036974084.1


Basic Information

Item Value
RNA id XM_036974084.1
length 2589
RNA type mRNA
GC content 0.49
exon number 18
gene id LOC110519964
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 39713690 ~ 39741849 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTTTCCTTGCGGAGTTTAAGTGACACTGCTGCTGCAGAAGAAGCCGCGTAGCTAGCTACTACTAGGGAGTACATTTTCACATGATAATGATACGCTTTGATTTGTAAAAAGCATTTGGACAATTACAATGAATCTCGACAGACTTCGAAAACGTGTACGACACTACATTGATCAGCAACAGTATCAAAGTGCTCTATTTTGGGCAGATAAGATTGCATCCCTGTCACATGAAGACCCCCAGGATATCTACTGGCTAGCACAGTGCCTTTACCTCACCTCTCAGTACCATAGAGCCTCCCATGCCCTCCGCTCACGTAAACTAGATAAGTTGTATGGCGCTTGTCAATATCTTGCTGCTAGGTGCCACTATGCTGCCAAAGAGTTCCAGCAGGCCTTAGACATCCTGGACATGGAGGAGCCAACCAGCAAGAAGCTGCTGGACCGGAGTGTCAAAGAGGAGAACAGGATACAAGAGTCAGACTGGGAGATGACCCCTGCCTCTATCAACAGTTCCATCTGCCTGTTGCGGGGGAAGATCTATGATGCCATGGACAACCGGCCTCTGGCCACGTCCAGCTACAAAGAGGCCTTGAAACTGGATGTGTACTGCTTTGAAGCCTTCGACCTTCTAACGTCCCACCACATGCTGACTGCTCAGGAAGAAAAGGACTTCCTGGACTTGCTTCCTTTGAGCCAACAGTGCACAGAGGAAGAAGACAAATTACTTCACTTCCTGTTTGAGAATAAATTGAAGAAGTATAACAAACCCAGTGATATGGTGGTCCCAGAGATGGTCAACGGTCTCCAGGACAATTTGGACGTGGTGGTCTCCCTTGCTGAGAGGCATTATTACAACTGTGACTTCAAAATGTGCTACAAACTCACTTCCATGGTGATGGTGAAAGACCCATTCCATGCCAACTGTCTACCTGTTCATATAGGAACACTGGTGGAACTCAGCAAAGCAAATGAACTGTTTTACCTTTCGCACAGGCTTGTGGACTTGTATCCCAACAACCCAGTCTCTTGGTTTGCTGTGGGATGCTACTATCTAATGGTTGGTCACAAAAATGAACACGCGCGTAGATATCTCAGCAAGGCGACCACTCTGGAGCGGACGTACGGTCCGGCATGGATCGCCTACGGTCACTCGTTTGCAGTGGAGAGTGAACACGACCAGGCCATGGCTGCCTACTTCACTGCTGCTCAACTGATGAAGGGATGTCATCTCCCCATGTTGTACATAGGGCTGGAGTACGGTCTTACAAATAACTCTAAACTGGCCGAGCGCTTCTTCAGCCAGGCCCTGAGCATAGCACCAGAAGACCCCTTTGTCATGCATGAGGTGGCCGTTGTGGCCTTTCAGAATGGagaCTGGAAAACAGCCGAGAAGTTGTTCCTGGACGCAATGGACAAGATCAAAGCCATTGGGAATGAGGTAACAGTGGACAAGTGGGAGCCACTCCTGAACAACCTGGGTCACGTATGTCGAAAACTGAAGAAGTATGTCCAGGCGTTGGAGTACCACCGCCAGGCCTTGGTTCTCATCCCCCAGCACGCGTCAACCTACTCCGCTATCGGATATGTGCACAGCCTCATGGGAGACTTCGAGAGCGCCATCGACTACTTCCACACAGCACTCGGTCTTAAGCGAGATGACACGTTTTCTGTGACGATGCTCGGCCACTGCATTGAGATGTACATTGGCGATACGGATGCCTACATAGGAACGGACATAAAAGACAAAGTCCGTGGGACGCTGAGCACCCCGGGGTTGATGAAGATGCTGAACACGTCGACGGAACCCAGTAACGCTCGAACCACGGTTCTTCTGGAGGAGAGCGGCATCATGGCCCTGGAGACGCCGCAGTCCAATCAGGACAAGGCCTCGTTGGACACGCCCCTGCGGAGCTCGCTGCCCCTGGAATGCAACATGTACGAGAGTGACATGATGCTCGAGACCTCGATGTCCGACACCAGCGCGTGATGTCACTGATGATATCATAGTAGTGGCAGGTTGCCTGATCCCAGCCTCGGGACCCATTACCAACCAGACAGTTGGCATTTATCTATAGGTTTCTCGTCGTGTTCCCCTCTTGGGGATTTGAAATGATGGGATTGGAATAGACTAAGCGATGGGGAAGAGGTTAAGGCAGAGCTTTTTAGCATGAATTTGACCTTCAGTCCAATTGGTTTTGTTGGAAAAATATGTCACGCTCAGTACCgtattgtaaaatatatattttttgggctGAATGAATATTGCTCACACTATTTCAATCCGTTCATATTCCCAAGGGAGGTTGAAAGGGACCTGGGGATGTGAGGTGTGGGCTTGGTTTGGATTTGTGCCTCAGGCGAGTAGTCTGAAGACAGTGGGGAAAGCAAAGACATGGTACTCTGATGCTTAACAGAATGGAATGAATGCAGCAGTAACTGACTGTGCCCCCTACTCCTGCCCACTAGCAGGAACGTGTGTTGCTACCTGTGGATTTTTACTTtgaataaagaaaaaaaaaatgctgaATGCAAGAGCGTTTTGATGAAAATACTGGTAATACTTACAATAAACCATGTTTATCTTTTta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU290927 lncRNA upstream 43698 39671307 ~ 39671526 (+) True G255357
TU290925 lncRNA upstream 44491 39670104 ~ 39670733 (+) True G255355
TU290919 lncRNA upstream 60721 39654256 ~ 39654503 (+) True G255349
TU290918 lncRNA upstream 61765 39653188 ~ 39653459 (+) True G255348
TU290916 lncRNA upstream 66323 39647819 ~ 39648901 (+) True G255346
TU290998 lncRNA downstream 45154 39787003 ~ 39787277 (+) True G255407
TU291027 lncRNA downstream 76491 39818340 ~ 39818548 (+) True G255433
TU291028 lncRNA downstream 77771 39819620 ~ 39819944 (+) True G255434
TU291036 lncRNA downstream 85971 39827820 ~ 39828046 (+) True G255442
TU291038 lncRNA downstream 87748 39829597 ~ 39829905 (+) True G255444
XM_021596877.2 mRNA upstream 5559 39706441 ~ 39709665 (+) False LOC110519963
XM_021596878.2 mRNA upstream 5559 39706441 ~ 39709665 (+) False LOC110519963
XM_021596879.2 mRNA upstream 5559 39706441 ~ 39709665 (+) False LOC110519963
XM_021596881.2 mRNA upstream 5559 39706441 ~ 39709665 (+) True LOC110519963
XM_021596880.2 mRNA upstream 5783 39706441 ~ 39709441 (+) False LOC110519963
XM_036974090.1 mRNA downstream 3925 39745774 ~ 39769426 (+) False LOC110519965
XM_021596885.2 mRNA downstream 3926 39745775 ~ 39769426 (+) False LOC110519965
XM_021596886.2 mRNA downstream 3928 39745777 ~ 39769426 (+) True LOC110519965
XM_021596887.2 mRNA downstream 27914 39769763 ~ 39782404 (+) False asmtl
XM_036974091.1 mRNA downstream 27914 39769763 ~ 39782404 (+) False asmtl
TU290915 other upstream 47136 39659059 ~ 39668088 (+) True LOC110519960
TU290310 other upstream 870668 38843510 ~ 38844556 (+) True G254816
TU289899 other upstream 1114358 38600487 ~ 38600866 (+) True G254445
TU289648 other upstream 1273490 38441166 ~ 38441734 (+) True G254204
TU289268 other upstream 1622490 38092322 ~ 38092734 (+) True G253834
TU292451 other downstream 698220 40440069 ~ 40452180 (+) False LOC110519969
TU292452 other downstream 698220 40440069 ~ 40452180 (+) True LOC110519969
TU297744 other downstream 4510220 44252069 ~ 44252551 (+) True G261749
TU298041 other downstream 4778570 44520419 ~ 44525408 (+) True G262037
TU299672 other downstream 6097072 45838921 ~ 45839480 (+) True G263547

Expression Profile