RNA id: TCONS_00030189


Basic Information

Item Value
RNA id TCONS_00030189
length 2211
lncRNA type antisense_over
GC content 0.34
exon number 2
gene id XLOC_014669
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 17275458 ~ 17277807 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTGTATATTGGTTATGCAACACTTCTGTTGAAGTGCATTTATGCTTTGAATGTTGCTTTGTGAGGGGCTGGCATTCATGTTGTGATCGCTACACTAAAAATCATTCATTATACTTGACAACACTGTCCTATAATTGTTGTGCATGCTACAATATTAAAGCTAgcttaacaaaactcaaacaaGCAACAAAACTTAACAAAACGTTAGTTCATCTGTAACATTCTACAATGCTGATATGGTACTGCCCCTCAAAAAAGATGGTCAAAATCacgttttattaattcattcattaattttcttctcagcttagtccctttattaatcagtggttacCACAGCGAATGAAACGCCATCTTATTCAGCACATGCTTTTTcacagagcggatgcccttccagctgcaacccattacggGGAAACACtcttattcaaacacatacactacagacaatttagcttacccaattcacttatagcacatgtctttggacttggggggggaaaccagagcacacagaggaaaccccacaaactccacacagaaatgtcaactgatttgagttgaagctcgaaccaacgaccttcttttATTGAGGCGACAActctactcactgcgccaccgcgctgcCCGAATCACATCTTATGTTCTTAGTAAAACACACATTGCAcaagaatgtttattttactatttattttttacagaaatCCATTTTGTTCAGTCTGTTAATGTCCGTATTACAGCCTTATGACAAAAAAGTTGTTTAGTCATTTAATATTTACCGTAAATTACAATATGCATATTTAGCatttacagaacaaaacagaCCCAGCCAATATCCAAACAAACCATCTCCACAACCAACATTTTATATTGCATCCAAACCACATTAATAGTAAGGTACAGTTTAAAAATATGGAGGCTGCATTGTCAATGCTAGCAAGAGGTCAGATTCACAGATTGAATGTCTATAACGTTAAAGGAGTAGCTATATCTGAAAACTatatgcttttcttttctttttttctgtggaaTACAAAAGGAGAAACTGCGCAAACTTTATTCTATTCTTATCTATATAATTCTAACATGAACCATCAGGATAATTTATCCAGGGTTTGAAGTCATTTTCTCATTCCCATTTGGATTCTTGGACTGGTTATGATGCTCCAtatttgacatgtactgtacataaattaatgtttattcattaaacaTATAAAGTGTGTAGGGTAAAAAAGTAAACCatcctttaaaataaatgaataaataactattataataataacaatctcgacaacactttattttaatggtccatttgagtattagtagactgtcagcTTAATATATGTCgatactgctctttcaacagacatttaactgactataaaaactttgcaagtgcatgtcaactaacacaaaccctaaccccaactcCAATCTAACAATcttcttataatctaatgagaattagttgcaatggagctttaattcaacaaatggaccatcaaagtaAAGTCTGACCAAAATCTCCTTTTGCGTTCCACAAAATAAATAACCTGCAATCAGATTTGTAATGTCAAGCGGGTGAGAAAATGATCACAGAATTGGGTCCCTCCTTATAAGGTGACCTTAACTACTATGCACTTACATCAATATTAATACAATGTACCTACTGTTTTCATAATGCATTTCTGGTGCTCTTGATGTGGTATACGATGAGGTTAGGGACAGGTTAGGTTtatatgggtaggtttaaggtgtAACTGATGGTCAACATtacaaaaaattacataaattaattacatccaggtatttaatcaatcataagtacaatgtaaaaacatgtatttatacaataagtacattgtagaaaattattaatttcagtgtaggtacatattagttaagaccACATAACAACAAAGTGGGACCCAGAATTGAAATTTTTGGGTAAAGTTGAATTGAAATCTCTGCAAGAAAAACAGCGAAAAGTGAGAAAAATAAGATTGTAAATTAGCTGCCTTTGAAAAAAGGTGTTGTGCAAACAGTCTCAATGCATAACTGAACAATGTTTATGCTTCCACCCAAAGTTTTAAATGTAACACgagtgaaattaaatattaaataaatacattgtaaacaAAGCATCCATTCCATTCCCTGTGTTCAagaaaataaaatttgcatttcagaaaaacaatattttat

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029771 lncRNA downstream 44438 17224646 ~ 17231020 (-) True XLOC_014668
TCONS_00029770 lncRNA downstream 74406 17200675 ~ 17201052 (-) True XLOC_014666
TCONS_00029769 lncRNA downstream 161855 17109593 ~ 17113603 (-) True XLOC_014665
TCONS_00029768 lncRNA downstream 509641 16759374 ~ 16765817 (-) True XLOC_014663
TCONS_00028971 lncRNA downstream 841415 16431966 ~ 16434043 (-) True XLOC_014662
TCONS_00030190 lncRNA upstream 43735 17321542 ~ 17321880 (-) True XLOC_014671
TCONS_00030191 lncRNA upstream 44193 17322000 ~ 17329053 (-) True XLOC_014672
TCONS_00030192 lncRNA upstream 75837 17353644 ~ 17354733 (-) True XLOC_014673
TCONS_00028994 lncRNA upstream 556397 17834204 ~ 17834825 (-) False XLOC_014677
TCONS_00029000 lncRNA upstream 673851 17951658 ~ 17972730 (-) False XLOC_014677
TCONS_00028973 mRNA downstream 64530 17205143 ~ 17210928 (-) False XLOC_014667
TCONS_00028974 mRNA downstream 64698 17208015 ~ 17210760 (-) False XLOC_014667
TCONS_00028975 mRNA downstream 66730 17208213 ~ 17208728 (-) False XLOC_014667
TCONS_00028961 mRNA downstream 1420031 15851226 ~ 15855427 (-) True XLOC_014656
TCONS_00028960 mRNA downstream 1840645 15423057 ~ 15434813 (-) True XLOC_014655
TCONS_00028977 mRNA upstream 10722 17288529 ~ 17304866 (-) False XLOC_014670
TCONS_00028978 mRNA upstream 14707 17292514 ~ 17303500 (-) False XLOC_014670
TCONS_00028980 mRNA upstream 14840 17292647 ~ 17304995 (-) False XLOC_014670
TCONS_00028979 mRNA upstream 14840 17292647 ~ 17304995 (-) True XLOC_014670
TCONS_00028981 mRNA upstream 99539 17377346 ~ 17385548 (-) True XLOC_014674
TCONS_00028976 other downstream 64723 17208245 ~ 17210735 (-) True XLOC_014667
TCONS_00028972 other downstream 275716 16999627 ~ 16999742 (-) True XLOC_014664
TCONS_00028964 other downstream 1246015 16029308 ~ 16029443 (-) True XLOC_014660
TCONS_00028963 other downstream 1246868 16028456 ~ 16028590 (-) True XLOC_014659
TCONS_00028962 other downstream 1247968 16027419 ~ 16027490 (-) True XLOC_014658
TCONS_00028989 other upstream 240254 17518061 ~ 17658173 (-) False XLOC_014675
TCONS_00028991 other upstream 240926 17518733 ~ 17526735 (-) True XLOC_014675
TCONS_00029018 other upstream 1139374 18417181 ~ 18418763 (-) False XLOC_014685
TCONS_00029036 other upstream 1556920 18834727 ~ 18834857 (-) True XLOC_014693
TCONS_00029037 other upstream 1560604 18838411 ~ 18838541 (-) True XLOC_014694

Expression Profile

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