RNA id: TCONS_00028960


Basic Information

Item Value
RNA id TCONS_00028960
length 1593
RNA type mRNA
GC content 0.44
exon number 6
gene id XLOC_014655
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 15423057 ~ 15434813 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGCTGAAGCCAGTGTTTCAGAAGAGCAGTTTGTCTGTCCAGTGTGTCTGGATCTCCTGAAGGATCCAGTAACAATTCCATGTGGACACAGTTACTGTATGAGCTGTATTACAGAATTCTGGGATCAGAAGAGCATCTACAGCTGCCCTCAGTGCAGACAGACCTACAAGCCAAGACCAGTTTTAGGTAAAAACACAATGCTGGCTGAAGTGGTGGAGCAGCTGAAGAAGACAAGACTCCAAACTGATGTTCCTGCTGTAAGTTTCATTACACCTGGAGACGTGAAGTGTGACGTCTGTACTGGAAAGAAATCAAAAGCGGTCAAGTCCTGTCTGGTGTGTCTGGAATCGTATTGCCTAACTCATTTTGAGCATCATGAGGAATTTCACTCAGGAAAGCGACACAAAGTGACTGACGCCATTGGTCATTTGCAGCAGATGATGTGCCGTGAGCATAATAAGATTCTGGAGGTTTTTTGTAACACTGATCAGCAGTACATTTGCGTGCTTTGTGTAATGGATAAACATAGAAACCATCACACTGTATCAGCTGTTGCAAAGATGGCAGAGAATGAGAGTCGTTTAAAGGAGAAACAGAGAGCAATCAAAGAAAGAACTGAGCAGAAACAGAAAGCCATTAAGCAGCTGAGAGAAGCTATTGAGTCTCATAAGCGTTCTACACAGACAACAGTGGAGGACTGTACAAGGGTCTTCACAGAACTGATCTGCTTTATTAAGAGAAGTTGTTCAGAGTTGACAGAGCAGATCCGAGATCAAGAAAGGGCTGCAGTGAGTCGAGCTGAAGGACTTATGGAGCGATTGAAGCAAGAGATTGATCATCTGAAGCGGACAAACACTGAATTAGAGCAGCTTTCACACACTGACTGCAATCATATCCGTTTTCTTCAGAATCTGAAGTCTCTCTCAGCTGTTCCTGACTTTACAGACAACCTCACTTTCGATTTCTTCTTTTCCTTCAATGGTGTGAGAAAATCTGTCTGTCATCTGAAACAGAAAATGGAGGCTTTCTGCAAAGAAGAAAGGAAAAAGATATCTGTCACACACAGCGACATTGTTCCCAAGACCAGAGAGGAATTTCTTCTGTaTTCACACCAACTGACCTTGGATCCAAACACTGCACATAGGAATCTCTGTCTGTCTGAAGGGAACAGAGCGGTGACTTACACAGCCACTCCACAGCCacatcctgatcatccagacagatttgataaATGTTTTCAAGTGTTGGGTAAAGAGAGTGtttgtggacgctgttactgggaggttGAGTGGAATAATAGTGTGcaaatatcagtgtcatataagagcatcagcagGAAGGGACATAGCAAGGAGAATAGATTTGGGTGTAATGATCAGTCATGGAGTTTGTTTTGCTCTTCATTAAATTTCGTATTCTGGCACAACAGTGAAGTGATTGAACTCCCCGTACCATCCAGTTCCTGTAGAAtcggagtgtttgtggatcacaatGCAGGAACTCTGACCTTCTATAGTGTTTCTGACACCGTGAGGCACATCTACAGAGTCAGGACCACATTCACTAAGCCTCTCTATCTTGGGTTCGTGGTT

Function

GO:

id name namespace
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0000785 chromatin cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070424-161 Predicted to enable ubiquitin-protein transferase activity. Predicted to be involved in positive regulation of transcription, DNA-templated. Predicted to be active in chromatin and nucleoplasm.

Ensembl:

ensembl_id ENSDART00000019843

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00028947 lncRNA downstream 1232971 14188120 ~ 14190086 (-) True XLOC_014648
TCONS_00030177 lncRNA downstream 1356507 14062042 ~ 14066550 (-) True XLOC_014646
TCONS_00028942 lncRNA downstream 1489871 13928251 ~ 13933186 (-) True XLOC_014643
TCONS_00028940 lncRNA downstream 1499953 13919007 ~ 13923104 (-) True XLOC_014642
TCONS_00029759 lncRNA downstream 1966410 13454968 ~ 13456647 (-) True XLOC_014639
TCONS_00030179 lncRNA upstream 592080 16026893 ~ 16030742 (-) False XLOC_014657
TCONS_00030178 lncRNA upstream 592080 16026893 ~ 16030742 (-) False XLOC_014657
TCONS_00030180 lncRNA upstream 592080 16026893 ~ 16030745 (-) False XLOC_014657
TCONS_00030182 lncRNA upstream 592080 16026893 ~ 16030750 (-) False XLOC_014657
TCONS_00030181 lncRNA upstream 592080 16026893 ~ 16030750 (-) False XLOC_014657
TCONS_00028958 mRNA downstream 2339 15408363 ~ 15420718 (-) False XLOC_014654
TCONS_00028959 mRNA downstream 2379 15417372 ~ 15420678 (-) True XLOC_014654
TCONS_00028956 mRNA downstream 25111 15306968 ~ 15397946 (-) False XLOC_014653
TCONS_00028957 mRNA downstream 87270 15307902 ~ 15335787 (-) True XLOC_014653
TCONS_00028955 mRNA downstream 141061 15276713 ~ 15281996 (-) True XLOC_014652
TCONS_00028961 mRNA upstream 416413 15851226 ~ 15855427 (-) True XLOC_014656
TCONS_00028973 mRNA upstream 1770330 17205143 ~ 17210928 (-) False XLOC_014667
TCONS_00028974 mRNA upstream 1773202 17208015 ~ 17210760 (-) False XLOC_014667
TCONS_00028975 mRNA upstream 1773400 17208213 ~ 17208728 (-) False XLOC_014667
TCONS_00028977 mRNA upstream 1853716 17288529 ~ 17304866 (-) False XLOC_014670
TCONS_00028954 other downstream 230411 15174843 ~ 15192646 (-) True XLOC_014651
TCONS_00028935 other downstream 1648588 13733168 ~ 13774469 (-) True XLOC_014640
TCONS_00028926 other downstream 2789794 12633149 ~ 12633263 (-) True XLOC_014634
TCONS_00028921 other downstream 3030299 12386297 ~ 12392758 (-) True XLOC_014630
TCONS_00028911 other downstream 3286186 12136736 ~ 12136871 (-) True XLOC_014626
TCONS_00028962 other upstream 592606 16027419 ~ 16027490 (-) True XLOC_014658
TCONS_00028963 other upstream 593643 16028456 ~ 16028590 (-) True XLOC_014659
TCONS_00028964 other upstream 594495 16029308 ~ 16029443 (-) True XLOC_014660
TCONS_00028972 other upstream 1564814 16999627 ~ 16999742 (-) True XLOC_014664
TCONS_00028976 other upstream 1773432 17208245 ~ 17210735 (-) True XLOC_014667

Expression Profile

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