RNA id: TCONS_00028957


Basic Information

Item Value
RNA id TCONS_00028957
length 6207
RNA type mRNA
GC content 0.45
exon number 6
gene id XLOC_014653
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 15306968 ~ 15397946 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTCCTTATTGTGTTCTTGTGAAAGCAGTGTCAGAGTGTGTTTTCACAAACATCAGTGCTATCTTAAATTAGGATTTTGTTAAACATTATAAAGAATCTGTAATTCTCACTCTGTTAAACTGTACTTCTGCCATTTATTGAGATTGAATCTGAGAAAACAAAAATAAGGTTAGCTTTAAtcctattatatatattttttaaaatgtaaaagtctttctccagtgttgaggaaaaaaaaacaatataataaaattggTGTGATGGAACAGGACTGCTTTCAAGTGTTCACATGTGTACTCTCGAGTAGTCTATTTGTGAGCTAGAGCTATTTGAGTATTACACGTTAATACAGAAAGTGGTGTGTATTGTATTCCAATAGCAGTTTATTGCAGTCTgactaattctttttttttctggtattTTCTAGAATTCCAATCTCTGAAGTGGATCATCTGTCAACCATATTTGGAACATAAAGCATCTGCAGAACACAGAAattgagaaccagacagagcaTTCATGGAAAAGCCTAGCTATTTTGGATTTCTAAGAACAAGAAAGAACAAGAAACAGGACAGACAAAAGTTTTCACTTTAACTGATAAGTTGTAGCTGTGTTTTATATAATTCATTGGAAGAAGCTCTTCTACCATCAAGCAATAATGCATACAGAACATTTCAGCTATGACCAACATGTAAAACCCTTGCGTATGTTGAATGGAACAAGGTATTATGCAGTTCTCTGAATTCATTGAATCAATTGGTCATTCATACAGTCTGGAATAAATAGCACCTTAGGCTTTCATCCCATTTTATGGAGGCTTTGCATAGCCAGGCGACCACTGGGGAGCAATCTGGAGGTTTAGCAAAGCAGAATGAGACCCCAGTGGATAACCCTAAGCCACAGTATCATGAAGAGAAAAAGGTTGTCACCCAGGTGCACCATGCACAGCAGCGGAAACATCTTAATATTGAAAGAAAACGGCTCCGATTACAGAGGAAATCTCTTCAGGAGAGAGATGTTGTTGAAGAGGGAAAGCCACCGAGGGCATCAGGTAGTTCTGAACATCTCAATGCTAACATGAGCCAGGCTAGAGAAATGCCATCTGGAGCTTCATCCTCAGCAGTATCAGCTAAACCCTCTTGTTCCATGGAAGAGGTCTTGGAAGGTACACCAAGACAAAAGCGTGAGCGCAAACCTCAAAAGCCAGGAAAGTATGTGTGTTCATACTGTGGCCGTGCTTGTGCTAAGCCCAGTGTGCTTCAGAAACACATTCGatcccacactggagagaggccttaCCCTTGTGCACCATGTGGGTTCTCCTTCAAGACTAAAAGTAACCTTTACAAGCACCGAAAGTCCCACACTCATAGGGTGAAGGCTGGTCTGACTGCAGACAGGGAGGGACCAGGTATAAGTTGTTCAGAGGAACCACTTACAGATTCAGATGAAGAAAGCCAACCATCTtcttatttagaaaaacaaagGATGTCAGTTCAAAACTCAAGTGCTACAGAAAGGTGCTCTGAGGGTCAGTTACAGGAAATAGAGGACTCTCATGCAGTTAAGAAGAGACTTGCAATGCGACTTAGCAGAGGAAGACGTACACCTTTAGGATCATCTGATGAAGCATCCTCATCATTTGGTCAAAGTAGCAAAGGTAGCACAGAGTCCGGCTATTTCTCTCGATCTGAGAGCACAGAAGTCTCTCAAGATAGTCCACCAAACACAAGCGCAAAAAGCTATGCAGAAGTCATCCTTGGAAAGTTTGGTCGCCTTGGTCATTTGCAGAGGACTTCTCATCAACAACATGCCCATCCTGCTGGACAAGAAGGGAAAAGAATTCCATTTAACGTTCCCAAAAAGCAAGTCATTGACCACATCACTAAACTCATCACCATAAATGAGGCTGTTGTTGACACCAGTAAGATTGACAGTGTCAAGCCCAGAAGGTTCTCACTTTCTCGGAGAAGCAGCACAGAATTGAAAGTAGTCTCTTCCAAAGAGCCATTTCTTCACAGTCCAAAAGAAATAGACATAAGTGCAAAAAGTAGTGGTTCCATCACTCTTGGTGTACCATGTGAGAAATTTCAACATCATTCTCTTAGTATCCCACAAACTGAATCAACATCCACTGCTCCTCTTTTGAGAAGTCACTCCATGCCCTCAGATGCAAGTACTAGTGACGTGTCTGAAACTTCCCGTAGCCTTCGCCTTAGCCAATCCTTTGATGACCCGCAACCAATTCAGAATCGGCGCCATGGAATGCTAAGACGACAGCCTGCAATTGAATTGCCAATTGGCGCTGAATTAACAATGGAGGAACAATCCTATTCCACCTCATCATTTCATCACCCAGTTACTACAATGCCTGATCCCAGCCAGAAACAAGAGCAATTTGAGTGCGGTGCTTGTCGTATTGTTTGTAATGACGTGGAGAGatatcaaaaacacaaacaacactgTTGCACAGTTCATATTTCTCAACAATCTGAAATTCCTGTTTATCAAGTAGATGAATCCACAAGAACATTTACATCCCGTTCTGGTGCTTTTGCAtttagaaaaagaagaaaagaagagaGTATTGAATTTGAAGATCCTTCTTTACCCTCAGTCTCTTATATACCACTGCGAGGGTATGCACCATCTTGTGAACAACCTATTAAAAGGACACATGAACTAGGTCAAGAATACTGCACAGAAGGTTCTTTGAAAGGAATATCTGTCATTCAGCATACCAGTTCATTTGAGAAACATGATAATAGTAAAACGGACGAACCCTCTCACACTCATGGTGTTTCCCACACTTCTCCTCATCCACAGACAAAGCAGCAAGCAACTAAACTATCCTTCCGTAAACTTGTACGCCAACAAAATGTCCAGGTACCAGAGATTCTGGTCACAGAAGATTCAAACACGGAAGCCATGGCAGTCTCACCCCCTCCGATTGTCCCTAAAATGAAGGACACTGAAAAAGTCAGTGAGTTCCAGTGGCCTCAGAGAAGTCCAACTTTGGCCCAACTTCCAATTGAGAAGTTGCCACCTAAAAAGAAACGTCTTCGTCTTGCAGAAGCAGCACAGTCTTCAGGGGATTCAAGCTTTGAATCAATGTCCCTGCCTCACAGTCCAAGTCAAGACAGTTGCACATCTCACAATTCCAGTAGATCAACTTCTTTTGAAGAAGCTGGAAAAGCTGATGCAGATTTGACACCAACTAGGAGATCAAGAGCCACTCATACTTTGACAGTTCCCATAAATTCTCATAGAGAAATGAGGCGCTCTGCATCTGAGCAGGCACCTCATATACCTCAAACTGCTAACCTTATTACAGAGATTCGCAGTAAATCATTTGACTATAGCAGTTTGTCTCCAGATCGGACCCCAGCAGGATGGAAAGAAAGGCGGAAATGCCTTCTATTGAGGCACAGTGCCGTGAGGGAACCTGAGGAGGAAGACCAAACTACCAAAGTCTTCAACACCAGCTCTCCCACTTGTAGGACTAGCACGTCACCTAGCCATAGCCCAGTCACCTCCTACAGCCCATCCACTCATCACGTGTCTTCAAGCAATACTGTACATTCATTTGGTGAGAAGCAGATCATGAAATCACAGGATGTTTTATCAGAGAATACCCAGCTGAGTACATTGCAGCTGACCCCAGTGATTCATACTGACCACCCCACTACCGTGGGAAGTCTGATTTGTCCATCAGGTGCTGCCAGAGCTCATTATTCTTCAATGTCAACAGGACTCAAGCTTGAAATTCCCATGGAAAAGGACCAACCATACATCACTCATTGTCACCAGCATCAGAATATTGGTTTTGATGTTACTTCAAACCCAGAAGTACTAAGACCTTTACCAGCCCAGAGTATTCCAGTCCGTCTTAATTCACACCTTCCATATCATGCAGGCtctatttatacaacagtttcacaaacatttttttcaaggCCCCAGGAACCTTGTTGCTCTGGAGTCAGTTCAGTTGCAGTGGTCTCAAAGTATGAAATTATGGATCAACAACCAGATTCTGAAAGATCTGATTCAGTAAGTGTTGGAGCAACCAAACGTGTCCTGTCGCCCACAAGCAGTAATGAACTCAACCCAGAAAGTGAACAACAGCAGAAACGAGTAAAAGAGGAGGAAGAAAACCAGGAAAATGAAAGGAGAGATGATAAGGTTTTGATTGAATTCAAAAAGGAGGAAATACTGGGTGAGCAAAGTGTCATCTTCCCAACTGAACACAAAGATCCCCCATTTCAGACTCTTAACACGAATCTAACTTTTAGCTGGTGCTTTCTAAACTACATAAAGCCAAATCCATCCATACAGAGTGAACAACAAAACTCAGTCTATTCTTCATGGTGTACAAGTACCCGCAATCCAAACCCTCCTGGCCTAACAAGCAAGGAAATGCTTTCCCTGTTGCAATGCAGGCAGAGACATGAAACACTTCTCTACACCATGGCATCCATGTCACCTTCTTTGGATGTGAAACAAGAGACACCTGACTCCCAAAAGCCTAACGTGACTGAGGTACATGCCGCTCAGCTCACAGAACCGAAAGAAGCCCAGCAAGCTGAGTTGACGGAGGTAGAAACAAAAACAACGGAGGAGAAGGAAGACCAGTTATCTACCTCCAAATGCAGCTCACGGGTACAGATTTGTGAGGGAGGCTACAGGTCAAGTGAGGAATATGTGTATGTACGTGGACGAGGAAGAGGTCGATATGTATGTGAAGAGTGTGGAATACGCTGTAAGAAACCAAGCATGCTGCGCAAACACATACGACTCCACACGGACGCCCGACCTTATGTCTGCCAGCACTGTAACTTTGCCTTCAAAACCAAAGGGAATCTAACCAAACATATGAAGTCAAAGGCTCATGGGAAGAGATGTCCAGAGGGACCTGCTCCAGGACCAGTCCAGTGTGAGCTGGAGACAGATGAAGGAGgtgacagtgctaaacatTTCCTTGAGACAGAGGAAGTGGAAGAACACCAGTTCTCGGATGCGGAAGAGTCCGATGACGAAGCTGAGGATAATGATGAAGGTGACGAGCAGACTTCATGCTCCTCTTCGTCATCCAAGTGGACGTCCATCTCCAGAGATGATTCTGGCTCGTGTGACATCTTAGGCCTTTCAAACCCAGGCTGGGAACAGCATCCCAAACCGCCTGTCAGTATGAGCCCTCGAAAGCCCAGCCACTATGGAGAAGCTTCCTCTCCGAAGACAACAAAGTCTATAGTGACACTTTTGCACCTTGATCCCACCACAGGAATGTGCTCATCCCCAATCCGTAGCCTTTCTCCTGGCCTGCAAATGTCCCCTGCTTTACCACAGTCTCCTGGACGGGACATGTCCCCTCTACGATGTCCTTCTCCAAGACTAAGTCTGTCTCCATCATCCTGTCTGTCCTCATTGTCTCCTTCTGACCGCTCGACTTCATCCTTCTCCGAGAGACGTGTGTCCCCCATTAGAGACCTGTCCCCCATACGGCCTTCGTCTCCCAGTTGTCCCCTGGCGTTGACTGTTGGGGCCAGTGTAACTATTCAGTACCAAGCTGACAGACCCAGAGCTTCAACAAAAGCCTCACCTAACAGGTTAAACCTCAAGAAAAAAACGGAGAAAACACACAGTCCTCACAGAAGGACCAACATGACCCAGTCTTGGCCTCCAGCACACGGGCGTCTGTCCAGGAACATGCAGCCCAGGGAAGGCCAGCGTGTGTTAAGTCACCTGCCTCTGCACTCCCAGCCTCAGGTGATGATTCCCAATCTCAGCCTCACCATTCCTATCGGCGGGATCCAGATGGTGCAGCCACGCTCCAATATGCTCCTCCGGAGTACATCTCTGAACCACAGCGTAGCCCAGATGACTGTCACTGTGCTGACCAAGGAGAAAGGCGCTGGGAGGAGTCCTGTGGGTGAAGTTCCTCATCGGAAGAATCAGCTGATAGTGTTTACAGAGCCTGCGGTGGAGATGAGCTCCAAGAGTGAAGCTTCCTCTGATGAGGACAAAGAGCAAATCCATGGAGTGGTTCAAGCAGAGCTTTTTTCTAGAAAAAAAGAAGTTCCCAGTGTCGCAATGACAACCTGGAAGAGTATCTCTCAAAAAAATAACAGAAAGCATTCTCGAAGTCCCAAGAAAACTCAGCCGGTAGACGGCTCAAGAACATCTATGGATGCTAAGTGTTGA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081029-2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in somite; telencephalon; and ventral fin fold. Orthologous to human HIVEP3 (HIVEP zinc finger 3).

Ensembl:

ensembl_id ENSDART00000187131

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00028947 lncRNA downstream 1117816 14188120 ~ 14190086 (-) True XLOC_014648
TCONS_00030177 lncRNA downstream 1241352 14062042 ~ 14066550 (-) True XLOC_014646
TCONS_00028942 lncRNA downstream 1374716 13928251 ~ 13933186 (-) True XLOC_014643
TCONS_00028940 lncRNA downstream 1384798 13919007 ~ 13923104 (-) True XLOC_014642
TCONS_00029759 lncRNA downstream 1851255 13454968 ~ 13456647 (-) True XLOC_014639
TCONS_00030179 lncRNA upstream 691106 16026893 ~ 16030742 (-) False XLOC_014657
TCONS_00030178 lncRNA upstream 691106 16026893 ~ 16030742 (-) False XLOC_014657
TCONS_00030180 lncRNA upstream 691106 16026893 ~ 16030745 (-) False XLOC_014657
TCONS_00030182 lncRNA upstream 691106 16026893 ~ 16030750 (-) False XLOC_014657
TCONS_00030181 lncRNA upstream 691106 16026893 ~ 16030750 (-) False XLOC_014657
TCONS_00028955 mRNA downstream 25906 15276713 ~ 15281996 (-) True XLOC_014652
TCONS_00028950 mRNA downstream 78481 15142527 ~ 15229421 (-) False XLOC_014651
TCONS_00028958 mRNA upstream 72576 15408363 ~ 15420718 (-) False XLOC_014654
TCONS_00028959 mRNA upstream 81585 15417372 ~ 15420678 (-) True XLOC_014654
TCONS_00028960 mRNA upstream 87270 15423057 ~ 15434813 (-) True XLOC_014655
TCONS_00028961 mRNA upstream 515439 15851226 ~ 15855427 (-) True XLOC_014656
TCONS_00028973 mRNA upstream 1869356 17205143 ~ 17210928 (-) False XLOC_014667
TCONS_00028954 other downstream 115256 15174843 ~ 15192646 (-) True XLOC_014651
TCONS_00028935 other downstream 1533433 13733168 ~ 13774469 (-) True XLOC_014640
TCONS_00028926 other downstream 2674639 12633149 ~ 12633263 (-) True XLOC_014634
TCONS_00028921 other downstream 2915144 12386297 ~ 12392758 (-) True XLOC_014630
TCONS_00028911 other downstream 3171031 12136736 ~ 12136871 (-) True XLOC_014626
TCONS_00028962 other upstream 691632 16027419 ~ 16027490 (-) True XLOC_014658
TCONS_00028963 other upstream 692669 16028456 ~ 16028590 (-) True XLOC_014659
TCONS_00028964 other upstream 693521 16029308 ~ 16029443 (-) True XLOC_014660
TCONS_00028972 other upstream 1663840 16999627 ~ 16999742 (-) True XLOC_014664
TCONS_00028976 other upstream 1872458 17208245 ~ 17210735 (-) True XLOC_014667

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000320_02165761_02186455.mRNA True 5499 mRNA 0.47 7 CI01000320 2165761 ~ 2186455 (-)