RNA id: TCONS_00029769


Basic Information

Item Value
RNA id TCONS_00029769
length 1341
lncRNA type inter_gene
GC content 0.30
exon number 5
gene id XLOC_014665
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 17109593 ~ 17113603 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tttggtttttcaaagactcacgtggattccggtcagaaagatgcatatgaggaagctcgactcaaacatccacacgcaactgtgatttctgactggtagacagatgaggacgatgatcgcctgtcatacatctaaagacagaacagggacagtatagacacatctataccatgatgaagaaaaattacttggaacaaagaggctggataaaagcacgactgactgaagttttaaaatcatgcaacgtcataaagcagcagctgggcctgattctcacaaaacccaaacagacgtgatgaaattccagatgtaaacacatttgaccttcctttagccaatttgatttggaaaagcttgaaaatcaactaaaggagcagcccgaacaaatgaagaaactgatggagtgaggacaaatgtccataccacgccactgataaagaagtggaaaaatgcattacaaggtagctacaacttgcccctgacagggatggaggaagaaagaagagaaagctaatgtgtcaaatgtctacatcactattttgttttattttttaaacaacattttaagtgtattaggatgttccctgatacttgaacaatttgtttctttcatttgcatttatttatatatatatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatatatatatgtatggtatgtatgtgtgtgcgccaaattctaaagaaacatcttgatacatttttaataaacgtaatacaaataaaattataaataaaaaattgcacaagacgtgtatatatatgaaatgcataatcatctcactcatgtctagctgtttgtgcaattgattttgttcaagtttatttaaaaaaaagtttgactttatacttctgcaattttatatatatattttaaaatatattatattatattttataaatgtttgtttattattattttaatgttttattaaaaatgtttcaagatgtttcttcagaattctgcagtactttttacaagtttgacttggatattttacggattgtcattggtatttttaagatgtttcttgctatatcttaaattggtttctatatttaggtttatataaaatttagctgtttttttacaaatttttaattcaagtctattgggaaaacagggttgttttaaaaaacatctgtgtttgtgtgtaatttttagagtttttgtttaaatctttctgtgtgtctttattgtgttgttttattgttgtttttatattgatattcttgtgcactacaaaattatttataaaattttagtactatttttttcatgcaatcaataaacgtttaacattta

Function

GO:

id name namespace
GO:0007178 transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:0001704 formation of primary germ layer biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0010604 positive regulation of macromolecule metabolic process biological_process
GO:0001706 endoderm formation biological_process
GO:0048731 system development biological_process
GO:0042074 cell migration involved in gastrulation biological_process
GO:0045995 regulation of embryonic development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0001711 endodermal cell fate commitment biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0001714 endodermal cell fate specification biological_process
GO:0016070 RNA metabolic process biological_process
GO:0007492 endoderm development biological_process
GO:0048762 mesenchymal cell differentiation biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0060896 neural plate pattern specification biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0060897 neural plate regionalization biological_process
GO:0043009 chordate embryonic development biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0051173 positive regulation of nitrogen compound metabolic process biological_process
GO:0048785 hatching gland development biological_process
GO:0048513 animal organ development biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0048519 negative regulation of biological process biological_process
GO:0048523 negative regulation of cellular process biological_process
GO:0003154 BMP signaling pathway involved in determination of left/right symmetry biological_process
GO:0035295 tube development biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0035050 embryonic heart tube development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0048568 embryonic organ development biological_process
GO:0090092 regulation of transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0010453 regulation of cell fate commitment biological_process
GO:0048856 anatomical structure development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:0010470 regulation of gastrulation biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0060485 mesenchyme development biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0007369 gastrulation biological_process
GO:0071704 organic substance metabolic process biological_process
GO:1900094 regulation of transcription from RNA polymerase II promoter involved in determination of left/right symmetry biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0050789 regulation of biological process biological_process
GO:0061053 somite development biological_process
GO:0061311 cell surface receptor signaling pathway involved in heart development biological_process
GO:0050794 regulation of cellular process biological_process
GO:0061312 BMP signaling pathway involved in heart development biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0007417 central nervous system development biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0007420 brain development biological_process
GO:0003303 BMP signaling pathway involved in heart jogging biological_process
GO:0001667 ameboidal-type cell migration biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process
GO:1901213 regulation of transcription from RNA polymerase II promoter involved in heart development biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029768 lncRNA downstream 343776 16759374 ~ 16765817 (-) True XLOC_014663
TCONS_00028971 lncRNA downstream 675550 16431966 ~ 16434043 (-) True XLOC_014662
TCONS_00028970 lncRNA downstream 675709 16431966 ~ 16433884 (-) False XLOC_014662
TCONS_00028969 lncRNA downstream 676036 16431966 ~ 16433557 (-) False XLOC_014662
TCONS_00028968 lncRNA downstream 676686 16431966 ~ 16432907 (-) False XLOC_014662
TCONS_00029770 lncRNA upstream 87072 17200675 ~ 17201052 (-) True XLOC_014666
TCONS_00029771 lncRNA upstream 111043 17224646 ~ 17231020 (-) True XLOC_014668
TCONS_00030189 lncRNA upstream 161855 17275458 ~ 17277807 (-) True XLOC_014669
TCONS_00030190 lncRNA upstream 207939 17321542 ~ 17321880 (-) True XLOC_014671
TCONS_00030191 lncRNA upstream 208397 17322000 ~ 17329053 (-) True XLOC_014672
TCONS_00028961 mRNA downstream 1254166 15851226 ~ 15855427 (-) True XLOC_014656
TCONS_00028960 mRNA downstream 1674780 15423057 ~ 15434813 (-) True XLOC_014655
TCONS_00028958 mRNA downstream 1688875 15408363 ~ 15420718 (-) False XLOC_014654
TCONS_00028959 mRNA downstream 1688915 15417372 ~ 15420678 (-) True XLOC_014654
TCONS_00028957 mRNA downstream 1773806 15307902 ~ 15335787 (-) True XLOC_014653
TCONS_00028973 mRNA upstream 91540 17205143 ~ 17210928 (-) False XLOC_014667
TCONS_00028974 mRNA upstream 94412 17208015 ~ 17210760 (-) False XLOC_014667
TCONS_00028975 mRNA upstream 94610 17208213 ~ 17208728 (-) False XLOC_014667
TCONS_00028977 mRNA upstream 174926 17288529 ~ 17304866 (-) False XLOC_014670
TCONS_00028978 mRNA upstream 178911 17292514 ~ 17303500 (-) False XLOC_014670
TCONS_00028972 other downstream 109851 16999627 ~ 16999742 (-) True XLOC_014664
TCONS_00028964 other downstream 1080150 16029308 ~ 16029443 (-) True XLOC_014660
TCONS_00028963 other downstream 1081003 16028456 ~ 16028590 (-) True XLOC_014659
TCONS_00028962 other downstream 1082103 16027419 ~ 16027490 (-) True XLOC_014658
TCONS_00028954 other downstream 1916947 15174843 ~ 15192646 (-) True XLOC_014651
TCONS_00028976 other upstream 94642 17208245 ~ 17210735 (-) True XLOC_014667
TCONS_00028989 other upstream 404458 17518061 ~ 17658173 (-) False XLOC_014675
TCONS_00028991 other upstream 405130 17518733 ~ 17526735 (-) True XLOC_014675
TCONS_00029018 other upstream 1303578 18417181 ~ 18418763 (-) False XLOC_014685
TCONS_00029036 other upstream 1721124 18834727 ~ 18834857 (-) True XLOC_014693

Expression Profile

//