RNA id: TCONS_00028968


Basic Information

Item Value
RNA id TCONS_00028968
length 138
lncRNA type antisense
GC content 0.36
exon number 2
gene id XLOC_014662
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 16429638 ~ 16434043 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ctgttattctttttcagatggataattgcgtgaaaatcaaactaaaagaatgcaatcttgaggagttaatccccacatttgaagcacagGAGCGAACCTTTTCTCGTTTTTAGGTCAATTTGAATACAATTCAGAGGG

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0001707 mesoderm formation biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0001757 somite specification biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0006396 RNA processing biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0009880 embryonic pattern specification biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0048332 mesoderm morphogenesis biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0007379 segment specification biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDART00000151815

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030188 lncRNA downstream 387384 16036012 ~ 16044582 (-) True XLOC_014661
TCONS_00029764 lncRNA downstream 400861 16026893 ~ 16031105 (-) False XLOC_014657
TCONS_00029763 lncRNA downstream 401089 16026893 ~ 16030877 (-) False XLOC_014657
TCONS_00029760 lncRNA downstream 401093 16026893 ~ 16030873 (-) False XLOC_014657
TCONS_00029768 lncRNA upstream 326467 16759374 ~ 16765817 (-) True XLOC_014663
TCONS_00029769 lncRNA upstream 676686 17109593 ~ 17113603 (-) True XLOC_014665
TCONS_00029770 lncRNA upstream 767768 17200675 ~ 17201052 (-) True XLOC_014666
TCONS_00029771 lncRNA upstream 791739 17224646 ~ 17231020 (-) True XLOC_014668
TCONS_00030189 lncRNA upstream 842551 17275458 ~ 17277807 (-) True XLOC_014669
TCONS_00028961 mRNA downstream 576539 15851226 ~ 15855427 (-) True XLOC_014656
TCONS_00028960 mRNA downstream 997153 15423057 ~ 15434813 (-) True XLOC_014655
TCONS_00028958 mRNA downstream 1011248 15408363 ~ 15420718 (-) False XLOC_014654
TCONS_00028959 mRNA downstream 1011288 15417372 ~ 15420678 (-) True XLOC_014654
TCONS_00028957 mRNA downstream 1096179 15307902 ~ 15335787 (-) True XLOC_014653
TCONS_00028973 mRNA upstream 772236 17205143 ~ 17210928 (-) False XLOC_014667
TCONS_00028974 mRNA upstream 775108 17208015 ~ 17210760 (-) False XLOC_014667
TCONS_00028975 mRNA upstream 775306 17208213 ~ 17208728 (-) False XLOC_014667
TCONS_00028977 mRNA upstream 855622 17288529 ~ 17304866 (-) False XLOC_014670
TCONS_00028978 mRNA upstream 859607 17292514 ~ 17303500 (-) False XLOC_014670
TCONS_00028964 other downstream 402523 16029308 ~ 16029443 (-) True XLOC_014660
TCONS_00028963 other downstream 403376 16028456 ~ 16028590 (-) True XLOC_014659
TCONS_00028962 other downstream 404476 16027419 ~ 16027490 (-) True XLOC_014658
TCONS_00028954 other downstream 1239320 15174843 ~ 15192646 (-) True XLOC_014651
TCONS_00028935 other downstream 2657497 13733168 ~ 13774469 (-) True XLOC_014640
TCONS_00028972 other upstream 566720 16999627 ~ 16999742 (-) True XLOC_014664
TCONS_00028976 other upstream 775338 17208245 ~ 17210735 (-) True XLOC_014667
TCONS_00028989 other upstream 1085154 17518061 ~ 17658173 (-) False XLOC_014675
TCONS_00028991 other upstream 1085826 17518733 ~ 17526735 (-) True XLOC_014675
TCONS_00029018 other upstream 1984274 18417181 ~ 18418763 (-) False XLOC_014685