Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00028992 |
| length | 5653 |
| RNA type | mRNA |
| GC content | 0.43 |
| exon number | 35 |
| gene id | XLOC_014676 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007130.7 |
| NCBI id | CM002903.2 |
| chromosome length | 48449771 |
| location | 17688350 ~ 17774884 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0000819 | sister chromatid segregation | biological_process |
| GO:0031290 | retinal ganglion cell axon guidance | biological_process |
| GO:0044774 | mitotic DNA integrity checkpoint | biological_process |
| GO:0007059 | chromosome segregation | biological_process |
| GO:0030261 | chromosome condensation | biological_process |
| GO:0000712 | resolution of meiotic recombination intermediates | biological_process |
| GO:0007412 | axon target recognition | biological_process |
| GO:0045944 | positive regulation of transcription by RNA polymerase II | biological_process |
| GO:0006259 | DNA metabolic process | biological_process |
| GO:0006265 | DNA topological change | biological_process |
| GO:0010842 | retina layer formation | biological_process |
| GO:0009330 | DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) complex | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0003916 | DNA topoisomerase activity | molecular_function |
| GO:0003918 | DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity | molecular_function |
| GO:0005524 | ATP binding | molecular_function |
| GO:0003677 | DNA binding | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| GO:0016853 | isomerase activity | molecular_function |
| GO:0008094 | DNA-dependent ATPase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-041008-136 | Predicted to enable DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity. Acts upstream of or within axon target recognition; retina layer formation; and retinal ganglion cell axon guidance. Predicted to be located in nucleoplasm. Predicted to be part of DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) complex. Predicted to be active in nucleus. Is expressed in brain; eye; immature eye; and pharyngeal arch 3-7. Orthologous to human TOP2B (DNA topoisomerase II beta). |
| ensembl_id | ENSDART00000130695 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00030192 | lncRNA | downstream | 333617 | 17353644 ~ 17354733 (-) | True | XLOC_014673 |
| TCONS_00030191 | lncRNA | downstream | 359297 | 17322000 ~ 17329053 (-) | True | XLOC_014672 |
| TCONS_00030190 | lncRNA | downstream | 366470 | 17321542 ~ 17321880 (-) | True | XLOC_014671 |
| TCONS_00030189 | lncRNA | downstream | 410543 | 17275458 ~ 17277807 (-) | True | XLOC_014669 |
| TCONS_00029771 | lncRNA | downstream | 457330 | 17224646 ~ 17231020 (-) | True | XLOC_014668 |
| TCONS_00028994 | lncRNA | upstream | 59320 | 17834204 ~ 17834825 (-) | False | XLOC_014677 |
| TCONS_00029000 | lncRNA | upstream | 176774 | 17951658 ~ 17972730 (-) | False | XLOC_014677 |
| TCONS_00030193 | lncRNA | upstream | 362830 | 18137714 ~ 18139390 (-) | False | XLOC_014680 |
| TCONS_00029772 | lncRNA | upstream | 362830 | 18137714 ~ 18139894 (-) | True | XLOC_014680 |
| TCONS_00029014 | lncRNA | upstream | 536628 | 18311512 ~ 18313300 (-) | True | XLOC_014682 |
| TCONS_00028986 | mRNA | downstream | 30097 | 17514631 ~ 17658253 (-) | False | XLOC_014675 |
| TCONS_00028987 | mRNA | downstream | 30097 | 17514631 ~ 17658253 (-) | False | XLOC_014675 |
| TCONS_00028985 | mRNA | downstream | 30097 | 17514631 ~ 17658253 (-) | False | XLOC_014675 |
| TCONS_00028984 | mRNA | downstream | 30097 | 17514631 ~ 17658253 (-) | False | XLOC_014675 |
| TCONS_00028983 | mRNA | downstream | 30097 | 17514631 ~ 17658253 (-) | False | XLOC_014675 |
| TCONS_00028995 | mRNA | upstream | 59885 | 17834769 ~ 17996336 (-) | False | XLOC_014677 |
| TCONS_00028996 | mRNA | upstream | 63066 | 17837950 ~ 17864213 (-) | False | XLOC_014677 |
| TCONS_00028997 | mRNA | upstream | 63066 | 17837950 ~ 17996180 (-) | False | XLOC_014677 |
| TCONS_00028998 | mRNA | upstream | 63181 | 17838065 ~ 17996336 (-) | False | XLOC_014677 |
| TCONS_00028999 | mRNA | upstream | 155175 | 17930059 ~ 17972734 (-) | False | XLOC_014677 |
| TCONS_00028989 | other | downstream | 30177 | 17518061 ~ 17658173 (-) | False | XLOC_014675 |
| TCONS_00028991 | other | downstream | 161615 | 17518733 ~ 17526735 (-) | True | XLOC_014675 |
| TCONS_00028976 | other | downstream | 477615 | 17208245 ~ 17210735 (-) | True | XLOC_014667 |
| TCONS_00028972 | other | downstream | 688608 | 16999627 ~ 16999742 (-) | True | XLOC_014664 |
| TCONS_00028964 | other | downstream | 1658907 | 16029308 ~ 16029443 (-) | True | XLOC_014660 |
| TCONS_00029018 | other | upstream | 642297 | 18417181 ~ 18418763 (-) | False | XLOC_014685 |
| TCONS_00029036 | other | upstream | 1059843 | 18834727 ~ 18834857 (-) | True | XLOC_014693 |
| TCONS_00029037 | other | upstream | 1063527 | 18838411 ~ 18838541 (-) | True | XLOC_014694 |
| TCONS_00029038 | other | upstream | 1066529 | 18841413 ~ 18841543 (-) | True | XLOC_014695 |
| TCONS_00029041 | other | upstream | 1079173 | 18854057 ~ 18855476 (-) | True | XLOC_014696 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | CI01000355_00973054_01017573.mRNA | True | 4713 | mRNA | 0.47 | 31 | CI01000355 | 972792 ~ 1017734 (+) |
| bowfin (Amia calva) | AMCG00021691 | True | 5449 | mRNA | 0.45 | 36 | CM030130.1 | 25682770 ~ 25704828 (-) |
