RNA id: TU254915


Basic Information

Item Value
RNA id TU254915
length 3639
lncRNA type antisense_over
GC content 0.42
exon number 1
gene id G223163
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 10263260 ~ 10266898 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTTCCACCAACTTTATTTTACAAATGTAGTGTTTGATCACTGCTGCATCCAAGGGGATCAAAATGCATTGGAGAAATTAAAAGTAGGCCTTTATATATTAAAATTAATAATAGTCATGAAAACATTCATGAAGTTCACTTGTAAATATCATCCCATACAAATCTATATAATCTCATACAAATCTAGATTTAGATTTATCCTTCGTCGTTCTACATAGGTTTAAATTAATTAATGATGGTGTCGAAACATACACCTATTCATTCATCTCTTTGTGTCTTATTTTATTCACCATCTATTTTACATGTGTTATGTGTCATTACTCATCAAAAATATCCCTGTTGCCACATaataggctatatagaaatatgTTAAATGTTAAGCATTTGGGTGGTCACTGTACATTCCACTAAATACTCACATATAATTTGTTGAAGCCTCAAATGAATGTGTTATAGAAGAGAGCCACAACCCATTAGAATATTCTGATTGTACTAGctatacaaaatacaatatacttACACAAAAAAAGGTTTACCATGTACAAAATAATGGCAGAAGTGTATGTAATGACTGTTTCAATGGTTATGGCTTGTGGCGATAGTACAGACATTGCTACAGACTTTCTGTGACTTAAATACAAATCTAAAACTAGGTTAGCTGTCCTAATTCCCTGAAAAAAGACACTGTTACTGAACATTCAggttgttactgttataccctTTTTACCTACCTGTGTTTAAGACATTAATGTAAACAcatacattgtgacatcatgtgtTAACCCTTTGGATTTTATTAGGTTAGGCTGTGGTGTTAGCAAGTGTTTCAATTTGGTCCCAGACCCAGAACTTTCCCCTCCCTAGTCCCTATCAATATTGTCTGACCTTGTGAACGGTGAGTGTAATGATTCCACCCCAACACGTGGAACCAACACAACTTTTGCTAATACCTATGCAATATTTTCAAATAGTCTAGATAGAAGGCTCCATCTAGGGAAAGGGACTAGGGAGAGGTTTGTAATTGGGCCTTTGTCTTCAAACATACTGTAATAAAGCCCTGTATTCAGGCATGTTGTCAATGCATTACCAAGCCATGGAGTTGACATGCATCAAGATTAGACAGTGTTAGTTTGAATCCCCATTTTGTGTTCAGAtgtaacaaaaacaaacaaaatgtcaTGAGAAAGATAGGTATCTAAAAACATGTAAACACTTCAAATCTCACTAAGAAAAATAACACCAACATCATTACTATAAGATAACCATTAATTATAACAACAATTATAATAATCATTAATAATAACACTTGTTGTAATCATGACAATAACCGACACGGACTACCCAGTGAACACCGTCTGACGCCGACGTCCATGGACGTCTAAAAGATGCCATTTTGCTCACTGGGTAAGTTACCATTGTGTATAGGAAGATTGTCAAAAGAAAATCTGTATCAACATGTCAGTCATTTTATCTCCTGAATTATGTCAGATTTTTTTCTTCTGTCCATTTGTTAGTTATATGAGACACTTTGTATACtgtagattatatatatatatatatatatatatatatatatatatatatatatatacagttataCTTCTCTCTTAGTCGAATACAAGTCTGTTCATTTTCTTAAGTCCCTTAAGTTTATCAAACACAGCCCCGCGCATCACCAGTGACTTGAGTGTCCTTTTTTGCTGAATGTAAACCACTAAGACGTGATACAAAATATGTCTGTCTTTATCTGGTGCAAATATCAGGGGATTGTGCAAAAACGTTTCTGTCTTAGTGTTTCCCTCTTTGAGCTGGTCTGGAAAAAAACTGCTCATGTTTATTTTTACAAGTTTGACTCCAGGCATCTACAGGACATTAGTACTCACACGTCAGTGACAATATCAACACCACAAATTAAGTGAAAGCATTAATATGCTGTATTATATGGTCCAAAGCCACACATGTAGGATAGGATAGCCCTTAATATTAAGCATTATTATTGATATTATGACATTTCTACCTAATAGAGAACGGTTGGAGTGTGTTACTACGAACGAGCAAGGTCCTCTTCTGATAAAGGGCATGCTAGCCAACCAAGTCTCTTCTGAGTCTCACCCTCATATCTGACTGCTTCATCATTGGAGTCGTCCTACAGTATGCATTATAGTCCACTGCCTTGTTACAGTCAATTCCCTAGACACATACACTTTGGCTTGCTCTGAAGCCAATCATTTGTATTGTCCTGTAGAAATGTTGGCTTGAGTCAGTTCTCCTCTGGTTTAGATTAATAAAATAGTGATTGTCAGACGTGCTTTCTCTGGTATTTTATTTGTATCCCAATGCATGGCTTTGAAGGTCAGTCATATTATGAAGTGCAACACCTGCATCATACTGTACTTGTTGTGCTCTATGAAAGAAAATACCCTGTAGTTGCAGTAGCTAATCCTCCTATTGGTAGGCTGACCAACTCAGAAGTTCCTCGTCAAACATAGTGACTCATGGCTCAATCAGATTTGGTTGTCCTGATGAAGACAGGTGGGTCACAGGGGAGCTCCAGGTAGAAGTTGCACTTAGGCACAGATTTAGGATCAGCTCAACCTCCCCAAATGCTGAGCATAACTATTAGGCGGTGGTGGGATGCAAAACTGACCTCAGATCAGTTAATGGGGGCAACTAGAGAATGTATGGAAGCAATTTTCTCAAGGTCACTCATTCTTTCACACAAGAAGCAACAATCGACAGCTCTGTTTTCCTGCGTCAGAATGAGGCGGGCTCACTTGTATACCACTCCCTGGATTCAAAACCCTACATCATCCGACATTCCACATCATAGGTCATGAAGATCATCAGTTCAATGCTCCATGAGGAAAATAGCATCCTTTGATACAAGTGAAACCTGTTTTTCTATGTAACACTGAAGTACACAGTCTGGCCGAAcaccactcttctctctctcatacttAGATGTATTATCTTGGTCCCTCCTTTCTAATATGGCTCAAAAGTTTCTTTATTCTGTTAAACATTTGATATAAAACACAAGGTTATGCATGAACAAACCAGTTCCTTAACTAAGTCCTAGCTATCTAATTTCTCCCACGTTTTTTTTCAGTTATTCATGGATTCAGTGTATGGTAATATGGCACATTAGATATGAAATATGGCTGATGTATCACATATATAAAAATGGCAGGATAATTCTGTTCCTCTACCATTTTGACCTCTAAGCAAGTCCTCCATCTCCCTATATGTACAGATTGATTCACCATATTTCCTTCTCTACCCTTCCTATTCTCGTATGTCTACTCTCTTCATgaagaccacacacacagtaggtaGAATTTGCCCTAACCACTGATACAGAGTCAGATATTTGTTCATCCCCCTTATGGTTAAGGGTGGGTTTAGGGGTGagataatctgatcctagatttgCAGTTGATGGCAATTTCTACCTGGTGCCCCTCACACTGTCACCTCATTCTTACTGCCTGTCCTGATGCCCTGactgcctccccctcctcctccacttcctcctcctctacttcctcctcccGCTCCTCCGTCGCCCCCTCCTGGTATAAAGTGTAACTGCTCAATAGTGTTCTGCCTCTTGGCAGCAAAAGCCATCCTCTTGGCGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254848 lncRNA downstream 2395 10225603 ~ 10260865 (-) True G223108
TU254899 lncRNA downstream 43911 10217461 ~ 10219349 (-) True G223148
TU254855 lncRNA downstream 109554 10153345 ~ 10153706 (-) True G223115
TU254852 lncRNA downstream 119437 10143309 ~ 10143823 (-) True G223112
TU254820 lncRNA downstream 158235 10099461 ~ 10105025 (-) True LOC110520825
TU254922 lncRNA upstream 31563 10298461 ~ 10298666 (-) True G223169
TU254930 lncRNA upstream 39789 10306687 ~ 10306960 (-) True G223172
TU254931 lncRNA upstream 40405 10307303 ~ 10307626 (-) True G223173
TU254933 lncRNA upstream 44256 10311154 ~ 10311493 (-) True G223175
TU254937 lncRNA upstream 46736 10313634 ~ 10314493 (-) True G223178
XM_021589664.2 mRNA downstream 33851 10226896 ~ 10229409 (-) True LOC110508823
XR_005040846.1 mRNA downstream 71489 10191357 ~ 10191771 (-) True LOC118945753
XM_021589640.2 mRNA downstream 83011 10167784 ~ 10180249 (-) False flcn
XR_005040845.1 mRNA downstream 83011 10167784 ~ 10180249 (-) True flcn
XM_021589630.2 mRNA downstream 99293 10160334 ~ 10163967 (-) True LOC110508798
XM_036968540.1 mRNA upstream 130166 10397064 ~ 10410486 (-) False pitpnc1b
XM_036968556.1 mRNA upstream 130166 10397064 ~ 10410487 (-) False pitpnc1b
XM_036968564.1 mRNA upstream 130166 10397064 ~ 10410487 (-) False pitpnc1b
XM_036968546.1 mRNA upstream 130166 10397064 ~ 10410489 (-) False pitpnc1b
XM_036968575.1 mRNA upstream 130166 10397064 ~ 10410492 (-) False pitpnc1b
TU254793 other downstream 240057 10020648 ~ 10023203 (-) False LOC110508724
TU254794 other downstream 240075 10020648 ~ 10023185 (-) True LOC110508724
TU254805 other downstream 248368 10012961 ~ 10014892 (-) True G223070
TU254786 other downstream 260366 10001415 ~ 10002894 (-) False LOC110508696
TU254343 other downstream 579889 9679908 ~ 9683371 (-) False LOC110534283
TU255954 other upstream 804048 11070946 ~ 11073750 (-) False znf628
TU255996 other upstream 905222 11172120 ~ 11174367 (-) True G223942
TU256045 other upstream 1009019 11275917 ~ 11278628 (-) False G223969
TU257101 other upstream 1460464 11727362 ~ 11741584 (-) True LOC110509576
TU257113 other upstream 1485953 11752851 ~ 11753680 (-) False G224869

Expression Profile