RNA id: TU256897


Basic Information

Item Value
RNA id TU256897
length 1404
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G224692
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 11391023 ~ 11392426 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTATATAAAAGTATAAACTGTAGTAGGAtgagaaataaaatacaaaataataatttcaaTAAAAGGGTACCTACTATTTTAGCGCATGTGAAAACTGATCATTAAAAAAGATGAATAAAAAATGTTACATGTTCCTAAGACATTTTTCACTTGGAAATAAGTATTAATAACTAAATAGAACAATAACCGTGTAAAGTCAGAGCAGACCTGTATGCCCTTTAAAACAGTATCTTAGTTACTGTATACATCAAATATAAATACAACTTTCAGTCTTCTTCGTAAGTTACTAAACAAAATAGGTCTTCTGGTCATACAAGAACAAACTAATAAAAATAGTCACCTGATGCTTGTTAGGTAAACAATATAAGGAAAATGAGAATACCATGGCTGAAACCATCAACCTGTTCCTTCTGGTGAGATTTTAGGGAGGAATATGGATTTCTGAACCGTTGATGAAGCCTCGTCCTCCGACGAAGTAAGCAGCCTTCCCCTCATTTCGTGCTATCTTGATCGTTGGCCACAACCTGTTCCTTCTTTCTATGTCCTCCGGGCTGAGATGCTCGGCGAAACACATACCATGCCTCTGAAGGAAGGCGTTCTTCCTAGCAGCTTTCCAAACAGCATCCCTATAGAATCTGGCAGTGAAGAGGATGATGATACCCCTTGGTCTTGAATCGTTTTGCTGTTGCTTCTTGGCGAGGCGATGCACAACGTCGATGGCATCACCAACTTTGTTCTTCTCTGCAGGCATAACTTCTTGGCAGATGCGGATAGCCTCTCCTCGCacatcttcattctccacctctggcaagccgtagagtctcaggttccatcttctTGTGTATTGTTCCAGATCAGTGAGACGTCTATGGtagacattattattattttctacacTTTTTTCAACTTTTGCCACTCTCGTTTTCACATCCTTGATTTCACCACATGCAAACTCCAGTCTTTTTCAAGCCTTCGATAACCATGGTGTTCGCGCCTACCATTTTCTCAATGGCGTCAGACCTGGAGTTGATGAGTAAGGAGAGGGTAGCCACGATGTCAGAGTTCATGTTGGGTTTTTTGGAGGGTGGAGGTTTGCATGGAGTAACCGGTAAACAGGGGAATTCGTCATCTTCAACAGCATGATATTATCCATAGGCCAAGCgtagttatggcagttgtctataagCACGTTTCTCTTGTTGATTAGCAATAGAACGGATAACTTCTTCCTTTCTTTTTTTGTCACAATTTCACATGGACATGCCAAAATAAATGATCCAATTCTTATTCCAGTCACAGGAAAGTTGGTATATcttgaacaaaaaaaaacagtaatAGTAGTGACTGTAaacttgttgttttttttacaatctTTCTGAAGTCTGGTGCGGAGCTCGGTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256882 lncRNA downstream 32607 11358172 ~ 11358416 (-) True G224679
TU256879 lncRNA downstream 37997 11346661 ~ 11353026 (-) True G224676
TU256047 lncRNA downstream 112395 11275917 ~ 11278628 (-) False G223969
TU256048 lncRNA downstream 112395 11275917 ~ 11278628 (-) True G223969
TU256004 lncRNA downstream 166193 11216565 ~ 11224830 (-) True G223949
TU256903 lncRNA upstream 188 11392614 ~ 11393104 (-) True G224693
TU256910 lncRNA upstream 15174 11407600 ~ 11407909 (-) True G224699
TU256915 lncRNA upstream 21281 11413707 ~ 11414069 (-) True G224702
TU256920 lncRNA upstream 29319 11421745 ~ 11423947 (-) True G224706
TU256927 lncRNA upstream 44921 11437347 ~ 11439264 (-) True G224712
XM_036968814.1 mRNA downstream 4305 11370632 ~ 11386718 (-) True LOC110510606
XM_021590107.2 mRNA downstream 22792 11365423 ~ 11368231 (-) True LOC110509134
XM_021590085.2 mRNA downstream 27178 11359013 ~ 11363845 (-) True LOC110509113
XM_036968754.1 mRNA downstream 226053 11151396 ~ 11164970 (-) True rasip1
XM_021589998.2 mRNA downstream 303894 11079975 ~ 11087129 (-) True LOC110509048
XM_021590140.2 mRNA upstream 32367 11424793 ~ 11432989 (-) True styk1b
XM_021590196.2 mRNA upstream 40692 11433118 ~ 11436182 (-) False LOC110509171
XM_021590151.2 mRNA upstream 40692 11433118 ~ 11436222 (-) False LOC110509171
XM_036968881.1 mRNA upstream 40692 11433118 ~ 11436480 (-) False LOC110509171
XM_021590173.2 mRNA upstream 40692 11433118 ~ 11436515 (-) False LOC110509171
TU256045 other downstream 112395 11275917 ~ 11278628 (-) False G223969
TU255996 other downstream 216656 11172120 ~ 11174367 (-) True G223942
TU255954 other downstream 317273 11070946 ~ 11073750 (-) False znf628
TU254793 other downstream 1367820 10020648 ~ 10023203 (-) False LOC110508724
TU257101 other upstream 334936 11727362 ~ 11741584 (-) True LOC110509576
TU257113 other upstream 360425 11752851 ~ 11753680 (-) False G224869
TU257114 other upstream 360425 11752851 ~ 11753680 (-) False G224869
TU257115 other upstream 360425 11752851 ~ 11753680 (-) True G224869
TU257122 other upstream 403464 11795890 ~ 11796309 (-) True G224873

Expression Profile