RNA id: TU301954


Basic Information

Item Value
RNA id TU301954
length 1407
lncRNA type antisense_over
GC content 0.37
exon number 2
gene id G265670
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 47749631 ~ 47751071 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGAGTTGAAAAAGATCCTTTATATTAGATCCGTGCCCCATACACTAGTGAAAAATTATGCTCCTACAAAAAAAAGTGACTTTTCCCCACAATATTCATAAATAAAATAACTTCAAGTACTCTGACTCAGGTACAAAGAAAATGCTGTACATGGCACCAGTAGACCATGCATGACACAGCCAGATTCAAACACAGTGGTTATTACAAACGCCCTGTGTCCTTGGGTCTGTGGCAAAGCAAATGGAGAGAACATCTTTTATGAAAGGTACTGTGCATCACAATGGATTCTGTACTGACGATAGGATGATAATGTCAGAATTCGAGGCCCACCAGAGTTGACATtttgtacacacagacacacacacacacaaccttttgAAGGAATGCTAAACCAAAAGATTGAAATAATTACCTCCACACACATTTGAGAGGGCAGGCATTACCCAGATTGAAGAGACCACAGTGTTTGCAGAGGATATACATCACAGGTAATATACATGTATTTATCACTTTAGACTGAAATGAAACACCACAATCAAAGGCATAAACAATATTGAATGTCTTGTAAcaatactgtatgtacacataTTACAAACAATACTTCATATTAACATGAATGAATAGTATATACAGATGTCATTGCTGCCTCACTGTCCGTGTGAAGTTAGCGAGCAATGTAAAGATACATTGAAATGCAGTGTTACAGTAATACCGTCAGGAATCTTGTGGTACCCCGGCGGCACAGAGCAGTGTAAACAATTAATTTTTTCTCTTGGCTTTAGTTTTATgtccaaaaaaataaaataaaaacattccgTGAGATTTTTGTTCAAGCAGTTTTGCTTTTTTCTTCCTCGTCTTAGAAAACGGAACCATTTTCACTCATAAATAATTGACTAAATTAAATACATTCACTTTAATAttaatattaaaaaataaaaaataaactaagtACAGTTAGTTGGAACGTTTTGTTCCCAGTTGCAGCTCCGATGTGGTTTCTTCTAGGAAATGGTATTGCACTTTAAAAACACCCACCCCTTTTGTGTGTATCCCTTTGGGTGCATTTCTCTGCTCTTAAAAAAAGAAACTGCATTCTACTGTACATCACTGAAGTGAATGTGTAGAATTACAATTGTAAATTCATTTAGGTTCCCTGGATGCTGACGGAGAGACTTTAGACCAATCCAGCTGCTCTGCTTGTGGTTACTGCTGGTCCCATACAGTATAGTGAGGATAAAGTAGTCCAAACTAGCCTAGTTGGTTTGTTTTAACAGCTCATTCCATCTACTCTCAAAAAAACTCCTCATGTTGTGTCCGGCTCGTCCAATGTCCGAATTGTCTTCATTAAACCTTTCACAGTTATCAAAAACCAAGTTAACGTCGATTATAAACGTCTCGAGGTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU301966 lncRNA upstream 21714 47727110 ~ 47727917 (+) True G265682
TU301917 lncRNA upstream 144978 47604340 ~ 47604653 (+) True G265634
TU301904 lncRNA upstream 163582 47585828 ~ 47586049 (+) True G265621
TU301903 lncRNA upstream 163997 47585349 ~ 47585634 (+) True G265620
TU301855 lncRNA upstream 269171 47480242 ~ 47480460 (+) True G265577
TU302051 lncRNA downstream 101090 47852161 ~ 47852393 (+) True G265759
TU302053 lncRNA downstream 103671 47854742 ~ 47854946 (+) True G265761
TU302055 lncRNA downstream 106305 47857376 ~ 47861453 (+) True G265763
TU302087 lncRNA downstream 161822 47912893 ~ 47913100 (+) True G265795
TU302097 lncRNA downstream 171688 47922759 ~ 47923118 (+) True G265805
XM_021597043.2 mRNA upstream 24788 47447377 ~ 47724843 (+) False LOC110520058
XR_005047120.1 mRNA downstream 95982 47847053 ~ 47851905 (+) True LOC118958036
XM_021597076.2 mRNA downstream 178250 47929321 ~ 47948028 (+) False LOC110520065
XM_036974340.1 mRNA downstream 179766 47930837 ~ 47948028 (+) False LOC110520065
XM_036974341.1 mRNA downstream 189659 47940730 ~ 47948028 (+) True LOC110520065
XM_021597077.2 mRNA downstream 220902 47971973 ~ 47976838 (+) True LOC110520066
TU300304 other upstream 917387 46831008 ~ 46832244 (+) False LOC110520046
TU300305 other upstream 917427 46831008 ~ 46832204 (+) True LOC110520046
TU300303 other upstream 917497 46831008 ~ 46832134 (+) False LOC110520046
TU299995 other upstream 1564827 46184134 ~ 46184804 (+) True G263859
TU299866 other upstream 1670206 46075484 ~ 46079425 (+) True G263733
TU303780 other downstream 1759732 49510803 ~ 49512475 (+) True G267358
TU303803 other downstream 1803427 49554498 ~ 49555838 (+) True G267381
TU303972 other downstream 2085546 49836617 ~ 49855502 (+) True G267529
TU305367 other downstream 2411230 50162301 ~ 50183026 (+) True hoxd3a
TU305730 other downstream 2851231 50602302 ~ 50604816 (+) True LOC110520146

Expression Profile