RNA id: XM_021597043.2


Basic Information

Item Value
RNA id XM_021597043.2
length 7318
RNA type mRNA
GC content 0.55
exon number 28
gene id LOC110520058
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 47447377 ~ 47724843 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagagggaggagctcGCGCAGTACCTTTGGTCCATCAGAGGATTCATGTGGAGTTAAGCCGTTGGAAAACTTTTCATACTGAGATATCCATGACATTTCCCAGATTACACTGACTCCATTGGCTAATTCAGCCTGCACGCTTTTAAAAGTTGTACCTTCGGATGGGCCCCAGCCATTAATCTggggagagtgagaggattCCAAGAATCAGACCATGTTCAAGGCAGTGCTGAAGAAGAACAGAGACGGAGGGAAGGGGAGCAAGAAGGAACCAGCGGGTGAGCTCCACATTGCACAGCGCAGGTGCCTGTCTGGCGAAGGTGCCCCCCAGACACATGAGCCTGGAGGCCTCCACCGCCCCTACTCCCCAGAGGATGTGTTCAGACTGAGCCTGGCCAAGGgcgtgtccatgtctctgccctcCTCACCCTTGCTGCCTCGCCAGTCCTACATGATGCCCTCGCGCTCTAGCAAGAGATCCCCAGGTCCAATCAGGAAGCCCAAGTATGTGGAGAGCCCTCGTGTTCCTGGAGACGCCATTATCTCAGAGCTGAGGAAGGTGGCTGATAGCAAGACAGAGTCCTCTCACAATGCAGAGCTGCAAGCCGAGAAAGAGCcaagctcctcctcctcccctgccaCTCAGGAGCTGATGACAAGGTTGGGCTTCTTACTGGGAGAAGGGATCCCAGGCACAGCTCGCATACCTATGGAAGACAAGAATGAAAAGAAGTGCTCAGTGACTAGTCAGGGTAtcagtccctgctccagtctgaccagTAGCACGGCGTCCCCCTGCACAGAGAGCCCGTGCTCCACCCTGAACAGCAACGCCAGCCACAGCCTCAGACACAGCAGCAGCGGTCACAGCAAAACTCCTCTGAGTCACTCCAGCCCCTGTGGAACCATTGCCAGCCCCAGCTCCACGCTCGAGAGCAAGGACAGCGGGATCATAGccaccaTCACAAGCTCCTCGGAGAATGACGACCGCAGCGGCTCCAGCCTGGAATGGAGTAAAGATGGCAGCCTGAGGAGCAGCGGGCACCATGGCCTGGTGCCCAGCGTGCGGGCCGATACATGCTCTCCCGTGGCGGAGGAAGACCCCAGTGGGCCTCCAGAGACCCCCACTCCATCTAGGACAGAGCACCCCACAGGCTCCTCAGCGGGGGCTGCAGGAGGAGCAGCAGTAGGACCAAGCCACCCACCAGAGGGCCCCGTTCCATACCCCACAGCACACACCTCCTTGTCCCTCATGTTGCCGCGGCCGAACTCTGTTGCAGccacCAGTTCCACCAAGCTGGAAGACCTGAGCTATCTTGATGAACAGCGTAATACTCCCCTGCGGACGTCCATTCGGCTGCCCTGGCATAACACAGGTGGGAGGGCACCACAAGACTCCAAAGCACGCTTCGCTCCCTACAAGACGGTGGACATCATGCTCAAGCCGCTGCTGTTCGAGGTGCCCAGCATCACCACAGACTCTGTGTTTGTGGGCCGCGATTGGCTCTTCCAGCAGCTGGAGGACGTTCTGAAGGGCGACGGTTGCGAGGAGAGCCGCGGCGCCGTGGTTGTGGGCAATGTGGGCTTCGGCAAGACGGCCATCATCTCCCGCCTGGTGGCGCTCAGCTGTCACGGTGGCCGCATGCGGCAGATCGCCTCTAACAGTCCCAGCTCATCGCCCAAAAATGGTGGGGACCCCCAGAGCACCGACCTCCCCCTCAGCCAGCCCCCTCAGCCCACCCCTCCACCCAGCGCCACCAACACCATGCGGAACAACAGCTGTCCCGGCACCCCTGAGGTCCAGAGACGCAAGGAGGAGGCCGTCAAACGCCTGGCCACCAAGGTGGTTGCATATCACTACTGCCAGGCTGACAACACCTACACCTGCCTGGTCCCAGAGTTTGTGCACAGTATCGCTGCCCTGCTGTGCAGAGCGCACCAGCTCACCGCCTATAGAGAGCTGCTGCTGAAGGATTCCTATCTACAGAGCATGCTCAGTCTGCGCTCCTGCGTCCAGGACCCAATGGCAGCCTTCCGCAGGGGTGTGTTGGAGCCACTGGCCAACCTCCGCAAGGAGAGGAAGATTCCAGAAGAAGACCATATCATACTGATAGACGGGCTAAACGAGGCAGAGTTCCACAAGCCCGACTACGGAGACACCATTGCCTCCTTCATCACCAAGATAATCTCCAAGTTCCCCTCCTGGCTCAAACTTGTTGTAACTGTCCGAGTCAACCTACTGGAAGTCACCAgcctcctccccttctccaagATCTCCCTGGACGATTTCCCAGAGAACAAGGAAATCAACACGGACCTCAATGCTTACATCCAGTACCGCATCAACGGCAGCAAAGACATCATGAACAATATCTCCCTCAATGGCAAGGCCGACCCCATCATTGTGGGAAAGGTGAGCAGCCACCTGATCGCCCGTAGCCAGGGCTCCTATCTGTACCTCAAACTGACCCTGGACCTGTTCGAGAGGGGCCACCTGGTGATCAAGAGCGCTAGTTACAAGGTAGTGCCCGTGTCGCTGGCCGAGCTCTACCTGCTGCAGTGCAACATGAAGTTCATGACTCAGTCGGCGTTCGAGCGCTCGCTGCCCATCCTGAATGTAGCGCTGGCGTCTCTCCACCCGATGATGGACGAGCAGCTGTTCCAGGCCATCAACGCGGGTACCGTGCGCAGCGAGCTGCCCTGGGACGACTTCAAGCAGCACATGGAGACGCTGTCCTGTTTCCTCATCAAGCGGCGGGACAAGACGCGCATGTTCTGCCACCCATCCTTCAGAGAGTGGTTGGTGTGGAGGGCGGACGGAGAGAGCACCAACTTCCTCTGTGACCCCAGGAGTGGACACGCACTCATGGCCTTCATGCTGTCGCGACAAGAGGGGAAACTGAACCGGCAGCAGACCATGGAGCTGGGCCACCATATCCTTAAAGCACACATCTTCAAGgGTCTGAGTAAGAAGACGGGTGTGTCTTCCAGCGTGCTGCAGGCCCTCTGGATCAGCTGCAGCGCTGATGGTCTCTCTGCAGCCCTGGCCTCTCTGAGGAACCTCTACACCCCCAACGTCAAGGTGAGTCGTCTGTTGATGCTAGGCGGGGCCAATGTGAACTACAGGACAGAGGTGCTGAACAACGGCCCGGTGCTGTGTGTCCAGTCCCACCTGGGCCACCAGGAGATGGCTGGCCTGCTGCTGGAGTTCGGGGCTACCTTGGACGTGGTGTCCGAGAACGGCATGAGCCCTCTCTGCTTTGCCTCGGCTGCCGGACACTTGGGTTTAGTCAGCCTGCTCTGCAAGAGAGGAGCCAAGGTTGACCATGTGGATAAGAGCGGTCAGTGTGCTCTGGTCCATGCTGCTCTGAGGGGCCACCCTGGCATCATCCAGTACCTCTTGGAGCTGGAGTGGACCCCCGAGGGCCAGCAGCAGAACTGCAGTCTGAAGAACAAGACCCTCCAGCAGGCTCTGATCGCTGCCTCCAGCATGGGACACACACAGGTTGTGAGAGGCTTGTTGGCGTTGAATAACGAGCACGCTGTGCAAATTGATGGCCAAGACACTCTGTGGGGAGAAACCGCTCTGACGGTGTCGGCGGGCCGGGGGAAGATGGACGTGTGTGGCTTCCTGCTGGAGCAGGGGGCTATGGTGCAGCAGATCAACCGCAGGGGGGTCTCACCTCTCTTCTGTGCTGTCAGACAGGGACACTGGCagattgcAGAGCTGCTGCTGCAGCATGGTGCTGACGTGAACATCAGTGACAAACAGGGACGGACACTACTCATGGTGGCGGCGTGCGAGGGCCACCTGAGCACGGCCGACTTTCTGCTATCAAAGGGTGCGTTGTTGACATCGATGGACAAAGAAGGGTTAACGCCCCTGAGCTGGGCGTGTTTGAAAGGACATAAGAACGTTGTGCAGTTTCTGGTGGAGAAGGGTGCGGTCATAGACCACACGGACAAGAATGGACGGACTCCACTGGACCTGGCCGCCTTCTACGGCGACGCGTCAATCGTCCATTACCTGGTGGACAGAGGAGCAGTGATAGAGCATGTGGACTACAGTGGCATGAGGCCGTTGGACCGGGCGATTGGTTGTCGGAACTCATCGGTAGTGGTGACCCTGCTGAAGAAGGGGGCTAAACTGGGGTACAGAACGTCGCCTTATGATCGATCAGGGAATGCAGCCTGGGCTATGGCCACGTCCAAGCCTGACATCCTCATCATTCTCCTGCAGAAGCTTATGGAGGAGGGCAACCTGCTTTACAAGAAGGGGAAGATGAAAGAGGCAGCCCAGAGGTACCAGTATGCTCTGAGGAAGTTCCCCAGAGAAGGGTTTGGCGATGACCTGAAGGCCTTCAAAGAGCTGAGGGTGTCTCTGTACCTCAACCTCTCCCGCTGTCGCAGGAAAACCAACGACTTTGGCTTGGCAGAGGAGTTTGCGACAAAGGCCCTGGAGCTGAAACCCAAATCGTACGAGGCCTATTACGCCCGCGCTCGAGCCAAGAGGAGCAGCAGGCAGTTCACGGCAGCCATGGCTGACCTGCACGAAGCGGCCAGGCTGTGTCCCAACAACCGTGAAATCCGGCGGCTGCTGGCCCGTGTAGAGGAGGAGTGTAAGCAGATGCAGCGCATCACGACCCAGGGCAAACCGCAGGGGGCCACGTCCTCGTCAAACCAGGCTCCGGCCAACAACGACTCGGAACACAAACacaaggaaggggaggaggaggagatgtcgGGGCATAGCATGGCCGTCAGAGGTATGGATGGACAGAACACTCTGGGGATGAATGACGTGGAAGGGGAGGGAACTtttcagtctcaacactcagacaggagaggagagagaggtgagcccTGGACACAGAACATCTACTCCATCAATAGAACTCTGCCTGACACCCTCAGCCTCACCACCCAGCAGCAGAGCACCAGGCCTTGCTCTCCCCCCTCCGGGCCCTCAGGCCCTGGCAGGCTGAGTCACCACCATTACCCTCCCCGGGAGCCCAGAGAGCCCACCAAGCAGGCCCAGATAGTCAAAACCAACCAGCACATGAGCTCCCTGCAGGCAGGAGGCCGCTCCTCGGGGGCCAAGTCCCAGTACGCCCCCTCCAGCCCCCTGCCCAGCCGACACATGTCCAGCATGCTGAAGCCAGGGGGTCTGGGCATAGACATCAGCCCTCTACCGCCCCCTCCCGACGAGCCCGTCTACGGGGAGCAACGCCTGTCTATGGCTGCTGCCTCCCAGAACATGGCTATGGGCCACCACTGCGAAAGGGACAGCGAATCCCTGCACTCTGCCCGGGCCTCCTACTCCTCCCAGGACCGTCTGTCTGCCCACTCGGTGTCCTCCCTGGACGCTCAGACCTCAGGGTCTCCCCAGGACCCCCTCAATGCTGCAGGGCCAGGCCAGGAGCGGAGGAAGGAGTGTGGGGGTAACGGGGTCTCCCAGGCACTCTCCCAGGGGGGAGACGGAAACATCAAGGTGTCCAGCTCCACCAGCTCCCTGGCCTCCAGCAGTAGTCTGTCGGAGAGCAGCAAGCTGCAGGGCCCTGATGTACGCACCAAGACCACCACAGACAAGGCCAAGCAGGGCCAGGGAGGCACGAGCGAGTGGAAACCCAGGCCCTTCATGGGCATCATGGACAAGAAGGCACGCTTtcttcagcagcagcagcaaatgcAGCGGGAATTACTGCAGCAGGAACAACTGCAGCGAGAACAACTGCAGCGAGAACAACTGCAGCGGCAACAACTGCAGTGGCAACAACTGCAGCAGCAACAACACCAAGGGCTCCAGAACCACCCAGGCCTACAGCCCGCCACCGGAGCCCTCCGCAGCTGGCAGAGTCACTCCTCTGAGGGATTAGTGTCCCACACCATGTCTGCCATGGGCCTCCAGGCAGCAGGGGTGAACTGTGAGCTACCTTATGCCAAAATAGGGAGCACTTACCACGAGCAGCTCAAAGCTCCATCTCAGGGTGCTATGGGGAGCCTGCAGAATGGAATGCACTCAAAGGAATTTGCAGAGAAGTTGTGCCAAGCATCCACCTGTTACAAGGAATCCAAGCCAGCTCTGGCCATGCCGTCGCACACTTTTGTGGACAGTAAGCCCAAGCAGCCAAGCTTAGTCCGAGAGAATCCCGCCATTCACGTAGCTTCAATGAAACCAAAGCGATCATTCATAGAGTCAAATGTGTAGGAATAtttatctcccctctctcaacACACAGACAACGAGATACACACGCTGGCACGCACATACAGACAACATGCACAttgcacacacccacaaacacacctTTGGAAAATTCTAAGTGGAGAGATAGTTTTTTATGGGCTGGTAAAAAATTAAGCAATGTAAGTCGAAACTTTGAAAGAAGTACGCAAACTATGTTTGTTCCCCCTGTGAATATCCGCCACATGGAGCGTTTTGATTGAAGCTGTAACAGAACAGATGTATTTCTTTCCTACTATTGCGTACAGCTGTTTGCTTCTGTTACAGGATGACATGTTCCCTCTTATTCAGCAAAGCTGGAGACATTGCAGTGACAGCACTTTACGCATTTACATAGGCCTTTAAGTAAAGTGCTTATACAACATATTATATTACAGTATAATGTTATTACTGAATTGTTCAGTGTTAAGTATAAGACAATatttgcatccaaaatggcaccctattcgctatataccgtagtgcactacttttggtcgACCCTGGtcaaagtggtgcactatatagggaatagggtgccattctggacaCATCCAATGGGATTTGAACTGTGTTCATTATGTCAATGGTGCTGATGACAGAATTACGGAGCTATTTAGAAGAGCTGTAAGGATATGTTTGAGATGGGCATTCCTGTGTTCTAAGAAGGATGTTGTAGATCCTCAcattgtgtatatataaatatatttttttccttcttttgAGTGAAGATCAATGTCAGTGTATTGACTTATCTGTATTTTGAGGTTTATTTGATGCACAATTTGGTTCCAACTGTGTTCAAGGTtctgaaaaatgtatttgtttatatgTTTGTACATTCTATAAATTGCCCGATAACGTTAACTAAATCCTCTCTGTATCTGCTTGTCGTTGCTGTCACGTTAATTTATTTACAATGTCTATGGCTTGATTCatcgtaaaaaaatatattttatatagttATTTTTGCACAGCTACTAAGACATTTTACAAGTTCAATAATAAGCTCTGTCAAAGTAATATTGGTTTAAGTGCATGCCACAACTTCAATTTATAATaaagagtttaaaaaataaatatctaTAAACAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU301557 lncRNA upstream 2166 47442712 ~ 47445211 (+) True LOC110520057
TU301489 lncRNA upstream 126495 47315249 ~ 47320882 (+) True LOC110520056
TU301348 lncRNA upstream 261756 47184571 ~ 47185621 (+) True G265120
TU301380 lncRNA upstream 269742 47175948 ~ 47177635 (+) True G265152
TU301378 lncRNA upstream 272217 47174873 ~ 47175160 (+) True G265150
TU301966 lncRNA downstream 2267 47727110 ~ 47727917 (+) True G265682
TU301954 lncRNA downstream 24788 47749631 ~ 47751071 (+) True G265670
TU302051 lncRNA downstream 127318 47852161 ~ 47852393 (+) True G265759
TU302053 lncRNA downstream 129899 47854742 ~ 47854946 (+) True G265761
TU302055 lncRNA downstream 132533 47857376 ~ 47861453 (+) True G265763
XM_021597041.2 mRNA upstream 2166 47442506 ~ 47445211 (+) False LOC110520057
XM_036974326.1 mRNA upstream 5454 47315219 ~ 47441923 (+) False LOC110520056
XR_005047120.1 mRNA downstream 122210 47847053 ~ 47851905 (+) True LOC118958036
XM_021597076.2 mRNA downstream 204478 47929321 ~ 47948028 (+) False LOC110520065
XM_036974340.1 mRNA downstream 205994 47930837 ~ 47948028 (+) False LOC110520065
XM_036974341.1 mRNA downstream 215887 47940730 ~ 47948028 (+) True LOC110520065
XM_021597077.2 mRNA downstream 247130 47971973 ~ 47976838 (+) True LOC110520066
TU300304 other upstream 615133 46831008 ~ 46832244 (+) False LOC110520046
TU300305 other upstream 615173 46831008 ~ 46832204 (+) True LOC110520046
TU300303 other upstream 615243 46831008 ~ 46832134 (+) False LOC110520046
TU299995 other upstream 1262573 46184134 ~ 46184804 (+) True G263859
TU299866 other upstream 1367952 46075484 ~ 46079425 (+) True G263733
TU303780 other downstream 1785960 49510803 ~ 49512475 (+) True G267358
TU303803 other downstream 1829655 49554498 ~ 49555838 (+) True G267381
TU303972 other downstream 2111774 49836617 ~ 49855502 (+) True G267529
TU305367 other downstream 2437458 50162301 ~ 50183026 (+) True hoxd3a
TU305730 other downstream 2877459 50602302 ~ 50604816 (+) True LOC110520146

Expression Profile