RNA id: XM_021601907.2


Basic Information

Item Value
RNA id XM_021601907.2
length 1567
RNA type mRNA
GC content 0.45
exon number 5
gene id med22
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 15796177 ~ 15810502 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTGGATCAGACAGAAAGGAAGATCCATGGATTGTGGGTAATTTAAGTACCGCGAGACATTTATGTGACGTCATAAACAATCGACGGCAGTGGTGATTTTGAACGGGATGTGCACCTTTCTATTTTCATAAATAATAGTTTCAACAATGTATTAGGAGGGGTTTGTTTACATTCCTGAATACGATGGCCAATCAAAGAGCGCTCCCTCAAAGCAAGGAGAGTCTTCTTCAGAACTACAACAAAAGACTGAAGGATGATATCAGGTCCATTCTAGATAACCTCACGGAAATCATAAAAACCGCAAAGGTAGAGGACGAGACACAGGTCTCTCGGGCTACTCAGGCTGAGCAGGACCACTATGAGATGCACGTCAGAGCAGCCAACATTGTGCGTGCGGGCGAGTCCCTGATGAAGCTAGTGTCGGACCTGAAACAGTTCCTGATCCTCAACGACTTCCCTTCGGTCAACGAGGCCATCAGCCTGCAGAACCAGCAGCTGCGCTCGCTGCAGGAGGAGTGCGACAAGAAGCTCACCTCGCTCCGTGACGAGATCGCCATCGACCTGTACGAGCTAGAGGAAGAATATTACTCCTCCAGCTACGGTCAGTGGGACAGTACCGACCTGCCCCTGTGTGAGGCCTACTGGCGTTGGGACAGTTGGGCGTCCCCGGACGGGGGCGCCACCTCCGGGTCAGCCCAGGGGGTCGAGGAGGACACAGACGGACCTGCCTCCCAGGAGACCACCCCCAAACACCACCTCAACGGACACGGGACCACCGCCGCAGCAGACAAGCCCTAAAGCAGACCACATATAGATGTAGAATGGACCTCTCCCTCCAACACTGTCACTCAGATTCTCAGTGGTACGTAGATTAGTGTTAATGTATCATAGTCTATCCATGTACAGTATGACAAGTCTTCCACTGTCAGTGTGTCTGGTGGAAATGGGGGGCAAGCAAAACTGAAGACCTTTAATGTTTCAAGGGTATTCCTCTGTATACTTTAATATTACAAGGGATCAGTATGATGAACACTGTTGATAAGCTAACGTTACACTCCAACTGCACAAATATCACTCATACTTTAATTAATCAATAATGGTAATCCATCTAAGGTTGCTTCTCCGATAGTTTATAAATGCTGTAAGCTCTGTAGCAAGGTATCCGACCAAATGGATAGAGTATGTAATTTTTTTTTTCCAAGTTAAATTTGGACAAGATTAGAGATAATGCTTAATGCAACTAGTGTGAAGACTTAGCTGGCCCAAACAACTTGTTTTTGCCCTGTCGGTCTAATATCCCCATTACATACACTTGTTGAGATTTAGTTTGAAAGACATTTCAGTTACCCCAGTGGCAGAAACATGGTGCATTACTGATGCCAATTTCTTTATTTTGGTTAATTTGTCTAAATGTATGACCATAAGACTGCATGTCATGCAAATGTATGGATGTTATGTTCTTGGATATCTTTTGTAGCATTGTTTTTGTAATTTTGCAATTTCAGTTAGTAAGCTTTTAATTGCATGAAGAATTTGACAAGTGAATAAAACACCATTATAAACTCAA

Function

GO: NA

KEGG:

id description
K15139 MED22; mediator of RNA polymerase II transcription subunit 22

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU422350 lncRNA upstream 2554 15791559 ~ 15793624 (+) True G371615
TU422343 lncRNA upstream 81583 15714329 ~ 15714595 (+) True G371612
TU422341 lncRNA upstream 82977 15712970 ~ 15713201 (+) True G371610
TU422323 lncRNA upstream 97487 15690051 ~ 15698691 (+) True G371598
TU422322 lncRNA upstream 107731 15688226 ~ 15688447 (+) True G371597
TU422370 lncRNA downstream 4703 15815205 ~ 15815749 (+) True G371632
TU422377 lncRNA downstream 40868 15851370 ~ 15851721 (+) True G371639
TU422392 lncRNA downstream 59271 15869773 ~ 15870026 (+) True G371653
TU422395 lncRNA downstream 76736 15887238 ~ 15916078 (+) True G371656
TU422407 lncRNA downstream 83873 15894375 ~ 15899296 (+) False G371661
XM_021601905.2 mRNA upstream 5150 15788795 ~ 15791028 (+) True LOC110523312
XM_021601897.2 mRNA upstream 24152 15756259 ~ 15772026 (+) False st6galnac6
XM_036976914.1 mRNA upstream 24152 15756307 ~ 15772026 (+) False st6galnac6
XM_021601898.2 mRNA upstream 24152 15757527 ~ 15772026 (+) True st6galnac6
XM_036976916.1 mRNA upstream 40056 15753011 ~ 15756122 (+) True st6galnac4
XM_036976903.1 mRNA downstream 6298 15816800 ~ 15839459 (+) False usp20
XM_036976905.1 mRNA downstream 6298 15816800 ~ 15839459 (+) False usp20
XM_036976906.1 mRNA downstream 6298 15816800 ~ 15839459 (+) False usp20
XM_036976907.1 mRNA downstream 6298 15816800 ~ 15839459 (+) False usp20
XM_036976904.1 mRNA downstream 6351 15816853 ~ 15839459 (+) True usp20
TU422347 other upstream 1056 15791559 ~ 15795122 (+) False G371615
TU421847 other upstream 667361 15124290 ~ 15128817 (+) True G371182
TU421788 other upstream 742622 15048178 ~ 15053556 (+) True LOC110519479
TU421530 other upstream 990707 14804661 ~ 14805471 (+) True LOC118964542
TU420985 other upstream 1428017 14367672 ~ 14368161 (+) True G370414
TU423147 other downstream 409104 16219606 ~ 16220933 (+) True G372281
TU423245 other downstream 925140 16735642 ~ 16738500 (+) True G372373
TU423600 other downstream 1059932 16870434 ~ 16882185 (+) False G372618
TU423601 other downstream 1059932 16870434 ~ 16882185 (+) True G372618
TU424889 other downstream 1893611 17704113 ~ 17707757 (+) True G373726

Expression Profile