RNA id: XM_021601898.2


Basic Information

Item Value
RNA id XM_021601898.2
length 2758
RNA type mRNA
GC content 0.44
exon number 6
gene id st6galnac6
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 15756259 ~ 15772026 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATCTGACACTAGCTACCAGCATGTTTAGCCAACTGTACAAAGTTTCTACCTGCAGTAGCTTGCAAAGTAAACGTCAGCTAACCGTCCCATGGCAAATGCTCCCTTCTGCTGCTTGACAGGCAGACCAAAAAATATGTGGAATTAACCTAAACCATGCATACTTGTCAGGGGTGGTGACCAGAAAAGCACAGAACATGCAATGTAGCTCAGCCTGACTTGGAAGCATGGGGATGAGGCTTGTTGAAAAGCAAGGGCCTAAGAGCCAGAAGATGGTGATCTTCGGGGCCATCTTCCTCCTGAtgaccctcctcatcctctttagCTCTAACAGCGGCAACGACATCAGTCCCTTCTACAGTCCCTTTCGGGCGTCCTCGCCTCATCACCCCATCAAGGTCACTGACCTCAAGAAATGGGCAGGGAAGGAGGGCTATGTGGCTGTCTATGGAAACAAGAGTCTGACCCTGCACTGCCACCACTGTGCCCTGGTGACCAGCTCCAGCCACGTGCTGGGCAGCGGGGCCGGACCAGACATCGACCGCGCCCAGTGTGTTATCCGCATGAATGACGCCCCCCTATCGGGGTTCGAACGTGACGTGGGGAGCCGGACCACCCTCAGGGTGGTGGCTCACTCGAGTGTGTTCAGGGTGGTTCGACGGCCAGCTGAGTTTCTCAACCTCACAGACCACCAGGCAAATTCTGCAGTCATATTCTGGGGACCACCCACCAAGATTGGTAGAGAGGCTAAAGGAACACTGTACCGTCTGATCCAGAGAGTCAGCATGACCTACAGTAACCTGTCCAGCTTTACCATCACGCCTAGCAAGATGCACAAGTTTGATACACTGTTTCAGAAggagacagggcaagacagAGCAAAGTCTCAGTCCTGGTTGAGCACCGGCTGGTTCACAATGGTGATTGCGATAGAGAAGTGTGACAATATTAAAGTGTATGGGATGGTTCCGCCCAGTCACTGTGGAAAAAAGCCCCAGCCCAAGAAGATGCCTTACCACTACTATAAACCCAGAGGCACAGATGAGTGTGTGACCTACCTGCAAAATGAGAGGGGTCGGAAGGGCCCCCACCATCGCTTCATCACAGAGAAACAGGTGTTTGCACGCTGGGCCAAGCAGTATAACATCACCTTCACTCACCCAACATGGTGAGATGACTAGTTCCTTCAACAAAGTTAGACCAAGGTATGAGAGAGGTGACGCACACATCTGGACCAGGGTCCTGGACAGTGCACgaatacccttttcacactactggACCAAACTGAGCTGAGCCTAGCTGGGCATCTACCATACAGTAGTTGCTGGAACTGTGATGTAAAGGACAACGTGAAAAGAAAATATCAGAGCCAGCACGTGTATGGTTCAGGTTGGCCCTATTATGTCAATCGGGCAATAAGTTGAATATACTTTATTATTCTTATAGAACTACACATTTCTGTGTCCCCTTCTCCGAATGGCAGCCATTTCTGTAGCTCTGTGATGGACCTGAGCTTAGTTTGTAAACATTAATATACATTCTGAAtgggcttctttttttttttacagtgcaaAATCTAATTTTATGGGATTTTGTAAATACGCTATTTCCTGTGTTTGGCAAGGAAGTTTGAAGAGGGCAACTGCAAAAATATTTATTGTAAATAAACAAATTAATTGAcatttaaatatgtatttttacatGTTGATAATGCTTTTGTTAAATGTCCTCAAAAGCACTCACATAAGATAATGTCAACTTTACGAATTGAGGGAAGATTGTATTATTCAAGAagttttaaaggggaaatctgcagtaGCTACATCATTTTTTTAACTTGAGGAATATAacttaaatgcctcatgagctttgtTGAACTTTCTTACCCCATCAGAACTGAAAATATAAACAAATACTGTATAACCTCAAAGCAAAAACTACCATTTTTATATCGtgttcagtccttgcatccatagctctatgaatgagtggttacatttctccatccCTTAGTGAAACAGTGGGAGTACACTTGTTTCAACGCTTTAAAGGAATTCATGAGACCTTTATATGCTTACAGACAGTATGGCTAAAGTTAAGTGACATGTTGTTTGTAGCATTACCGTATCCAATCTAACCTTTTATGGCTCAGTGTTAACATACCAACATCAGAACACAAGCTTACATTTATAGCGCTGTAGGTTGGCTCGTGCCAAGCCCATGGATTCACACCATGCCTGTTGAATGTAGGGGTGTGTGAGCTTCTGTAAGGCATTCACACAAATGTGCTGTATTAAATACCAAGTAGTTTTATCCTGTCTAACCACGACATGGACGAACGTTGCCTCGTCATCATGCTTGACCCTTTACCTCTGACATCTTGAGGCATGCAGCGGTCTGAGTTTGAATAATTCTAATTAATGTATTGCGGTATTCATTAGCATCACTGAACAGAATGTATTGCATTATTTATTGTTAGCATTGTGTTCAGCAACTTCTCTTCATGTATGTTCTGTAATGCGTCTTGAGAACAAATTACATAAACTGATGCATATAAATGACTTAATTCACCTGGAATCCTATACAGAGGGGATAGTAGAAACAGAGCAAAGCTAGCGTTAGCTTTAACTAGCAAAATGCTACCAAAGAGAGAGGATATAAATAAGGAAACACCCAGAATGAGGTCTCATGGCCAAGACACTAGGTTCTTCTTCACTTGTGCTGTGATCTCTTActcttgaaaaaataaaaaaaacagca

Function

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0097503 sialylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008373 sialyltransferase activity molecular_function

KEGG:

id description
K03376 SIAT7F, ST6GalNAc VI; N-acetylgalactosaminide alpha-2,6-sialyltransferase (sialyltransferase 7F)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU422343 lncRNA upstream 42932 15714329 ~ 15714595 (+) True G371612
TU422341 lncRNA upstream 44326 15712970 ~ 15713201 (+) True G371610
TU422323 lncRNA upstream 58836 15690051 ~ 15698691 (+) True G371598
TU422322 lncRNA upstream 69080 15688226 ~ 15688447 (+) True G371597
TU422292 lncRNA upstream 106091 15650978 ~ 15651436 (+) True G371567
TU422350 lncRNA downstream 19533 15791559 ~ 15793624 (+) True G371615
TU422370 lncRNA downstream 43179 15815205 ~ 15815749 (+) True G371632
TU422377 lncRNA downstream 79344 15851370 ~ 15851721 (+) True G371639
TU422392 lncRNA downstream 97747 15869773 ~ 15870026 (+) True G371653
TU422395 lncRNA downstream 115212 15887238 ~ 15916078 (+) True G371656
XM_021601899.2 mRNA upstream 1337 15752904 ~ 15756190 (+) False st6galnac4
XM_036976915.1 mRNA upstream 1405 15750191 ~ 15756122 (+) False st6galnac4
XM_036976916.1 mRNA upstream 1405 15753011 ~ 15756122 (+) True st6galnac4
XM_036976911.1 mRNA upstream 166084 15464555 ~ 15591443 (+) False LOC110523300
XM_021601905.2 mRNA downstream 16769 15788795 ~ 15791028 (+) True LOC110523312
XM_021601908.2 mRNA downstream 24151 15796177 ~ 15802214 (+) False med22
XM_021601907.2 mRNA downstream 24152 15796178 ~ 15810502 (+) True med22
XM_036976903.1 mRNA downstream 44774 15816800 ~ 15839459 (+) False usp20
XM_036976905.1 mRNA downstream 44774 15816800 ~ 15839459 (+) False usp20
TU421847 other upstream 628710 15124290 ~ 15128817 (+) True G371182
TU421788 other upstream 703971 15048178 ~ 15053556 (+) True LOC110519479
TU421530 other upstream 952056 14804661 ~ 14805471 (+) True LOC118964542
TU420985 other upstream 1389366 14367672 ~ 14368161 (+) True G370414
TU420951 other upstream 1431632 14321104 ~ 14325895 (+) True G370382
TU422347 other downstream 19533 15791559 ~ 15795122 (+) False G371615
TU423147 other downstream 447580 16219606 ~ 16220933 (+) True G372281
TU423245 other downstream 963616 16735642 ~ 16738500 (+) True G372373
TU423600 other downstream 1098408 16870434 ~ 16882185 (+) False G372618
TU423601 other downstream 1098408 16870434 ~ 16882185 (+) True G372618

Expression Profile