RNA id: XM_021602433.2


Basic Information

Item Value
RNA id XM_021602433.2
length 5893
RNA type mRNA
GC content 0.49
exon number 26
gene id LOC110523594
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 30218103 ~ 30243372 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTTGCGCCCCTAGCGGCAAGATACCTTCTCGCGTCACCGACTGTTCCCAAATTGTTGACGTGGTGCGGTTCGCTACCGGACAGGAAGGATGGCCGACCAGAGCAGGCAAATTAAACTCGCCGCAGCCAAGAAAAAGCTGAAGGAGTTTCAGCAGAAGAGTTCTCCTGCCAGTGGAGGAGGGGTTggaaatggaggaggaggaccaggtgccaagaagaagaggaagggagggagccaACCAGACACACCCTCAGCTGACCTACACTCTCCAGACAATATTCAGAGTATTCTGAAAGTTCGTAGTCAGACCAATGGATTAGCTCTGCCTCCCTTTGGCAACAGCCAGAACTGCACCCCTGACGGCAATGAAAACCATGCGGAAGAGAATAGaccCCTTTCATCCACAGAGAGCCTGCGGCAGCTCTCCCAGCAGCTCAACGGACTGCTCTCTGGGTCATCCACCACCTATGTAAATGGAGACGGTGCTCCCTCGCCTGCCAATGAAAACGAACTGGAGAGTCGAAACCAGGAGCTGGCAACCGCACTGGACTCCAGCAACCTAACAAACTCTCAGCTCAGTACCAAGTTAGACCTGCTGACCAAGCAATCTCAGGAGCTCACAGATCAGCTGCAAAAGGAGCGAAAGGAGTTTGAACTGAAATGTGTGAGGGAGCAAGGAGCCATGCGAGAACAATTACAGGTCCACATCCAGACCATCGGCATCCTGGTGTCGGAGAAATCGGAGCTGCAGACCGCACTGTCATACACGCAGCAGGCTGCCCGCCAGAAAACAGGAGAGGCTGAGGAGCTGAGTAACCGTCTCCAGGCCACCAAACAGAGAGTCTCTGAGCTGGAGAGAACCCTGTCCTCCGTCTCCACACAACAGAAACAGTTTGACAAGCATAacaaagagctagagagagagagagacaacctgAGGCTAGAGGTGTACAGACTAAATAGTGtgagtgaggagaggaggcagcagagttcagagctgtcagagcagctcaagCTGAAGGTGAGTGAGAACAGTGCTATGAGACTGGACCTGGATGAACTGCGCAAGAGACTGGAGATGGCTGACGTCATGCTGCAACAGTTTTCCAGTCAGTCAGGGCCTCCCAGTGCCAACCAGCAGATGCAGTTACTACTGGAGGAGAAATTACAGATTGAGGTGCACACTGctcagTTAATGGAGTCGGTGGCCCagctgcagacagagagagaccgttACGCTGAGCAGATCCATGAGGAGGGACGAGTATGGAAGGACAAGACAGAGCAGCTGCTCTCTCAGGTGACACTAgtagcagaggagagagacaggagcatCAGTCAGATCCAGGAGCTAGAAGTCCACATCACAGACCTGAAGCACGCTGCAGCCCTTTTGTCCCATGAGAGAGAGGCCCAGGTAGATCCCCAGCCCTCAGGGCCCTCCATGAGTGAACTGGCCCTCCAGGAAGCCCTCAGCAGCCTGCAGCAGGAGAGAGACTCTCTCAACACACAGTTCCAGGCCCAGCTACGTGACAACGAGCAGCTGAGTCGTATGTGCTCGGAGCAAGAGTCCCGTCTCTCGGAGCTGGAGCGCCATGCGGAACGCGGGGCCGAGGATGCAGAGGACCGCAGGCGCATGCTGGAGGACGTGCAGAGCGACAAGGCCACCATCAGCCGCGCCCTGGCCCAGAACCGCACCCTTAAAGACCAGCTGGCTGAGCTGCAGAACGGCTTCGTCAAACTGACCAATGAGAACATGGAGCTGACCACTGCTCTGCAGTCAGAGCATCACGTCAAGAAGGAGCTGGGACGCAAGATGGGACAACTACAGGAGGACCTGCATAACTTCAAGGAGCAGTTGGAGCTGAAGTCTCTGGAGTACCAGGCACTGCTGGAGCAGCGGGACCAGATAGTGGCCCACCTACAGCAGTACTCTGCAGGCTACACGGCCCTGGCATCTGAGCGGGAGCAGCTCCACAGACAGTACTTGCAGCAGAGCCAGCTGATGGACCGGCTGCAGCATGACGAGACCCATGGAAGGGTTCAACTGGAGATGAGCCACAAACAGCTGGAGCAATACCAGGAGAGGCTGGAGCGGTTGTCCAGAGACAACGAGCAGCTGAAGGCTGAAGTCACAGAGCTGCTCAACAGCTCAGCCCTGGCCACACCCCCCAGAGACCAGGGAGACGGAGTGGAGAGCCAATCCCTGCCAGAAAGCCCACAGAAGTCCTCCATTGCTATCCCAGAAGACTTTGAGAGCCGGGAAGAGATGGAGGAGTTTGTGCGTGATGCAGTGGCACgtgtggaggcagagagagatgaggtgaggagcagactggaggaggagaggagactgcaCCTTGCAGCCCGTCACCAGGCTGCAGCACCCAGCATGGAGTTCCAGCACCACAGTCATGACCATGAACACAACCATGACCACGGTCACAGCCACGGCCACACTCACAGCCATGACGGCCACACTCGCAGCCATGATGACCACAGTCACTGTGAAcacacagTCTCAGGGTCAGAGGGCGTACCAGTGGAGGTACACGAGGCCCTGTGTGTTGCCATGGAGAAGCTCCAACACCGCTTCACCTCACTGATGCAGGAGAAGGCTGACCtgaaggagagggtagaggagctGGAACACCGCTGTATACAGCTGTCTGGAGAGACTGATACTATAGGAGAGTACATTGCCCTGTACCAGAACCAGAGAGCTGTCATGAAGCAGAAACACACGGAGAAGGAGCAGTACATCAGTATGTTGGCCCAGGACAAAGAGGAGATGAagGCCAAACTGGCAGAGCTGCAGGACCTGGTCATGAGGTTGGTGGGTGAGAGGAACGAGTGGTACAGCCGCTATGCTGGGATGGTGGCTAGCGCTGACACTACAGCTAACCCTGACCTGCTGCCAGCTGGGGAGGACCATGTCCAGGCTCACCACGCACACAGACGCATGGAGCTCAATGCTGTGGACGGACAAGaGTCTATGGATCTAAGTAAAGCTATGGAATCTGACTCCACCACCCCTGATACCCCTCACAGTGCACTGTCAGACTTGGTCCAGAGGCTCCCCCCAGATTCACAGGCTCTGATGAGGCCCCAGGAGGATGGCACGGCCAGGCAGATCATGCAGCTGCTCCAGGAGATCCAGGGGCCCCGCTCCGTGCCCTTCCTGGGGGACAATCCCTGCATCCCCTTCTTCTACCGGCCTGACCAGCAGGACGAAGTCAAGATCCTGGTGGTCTGATGAGACTATGGAGCCAACTGGCAAAGTTGGTTTGGATCCCTGGCAATGTTGAAGGatctctgaacacacacaccattccacCACGTCACACTTAGGTCATCTAGGatcacacgtacacacacttCTGGGTATACGGTCTCACACACATGcgcactctccccccccccccccccgtcatcgTCAAATTCAAGTTTCTGGAGAGTTTGTTTACGCTGTCTCACACTCCATTTGAGTCCTTGGGGGGTCTCACATGCAGTTTATTATTCACTGCACACTAAGGCTGGGTGTTGCTCACTCCCCTTATGCAATAAAATATCTCTGTCCCCTCAGTCAGTCTATTGAAGGAGAAATGAAGGCTTTCAGTGAAGTTAGCAGCAAtagtatgtgtgcgtgcatggaCTACTCTCACAGGATCCTCATTCACAATGTGTGTCTGATTCTGGAGAAGAACTGGGATAGTCTGTGTTTGGTAGTGGAGACAGACAAGGCTTGGTTTTGCCCTGTGGGCTGTGTCTCAATTAATTTATTTGTCTCTTTTCCTCCATGACAACTGATGGGCAACAACATACTCAGGCATTTGGTCATGAATGGAAGGAGACTGATACACAGCCTTAGGTAGGTGTTGGTGTGTTCTATGGCAGTGGAGGTAGTGTTTTGTCAGTGAAGCAGGTGGAGTAGTGAAGGTCAGTATCAATTCAGGCTGGAGCCTTGACCTAACTGGGGAGAAAGCAAGTCAGGAAGCATTGGTAAAGACACTAGCATTTGGCACAAGTTTGCATTGTTCACTTAATTTCTAAGTTGTTTACTTCTAAGTAGGGGAACACAATGACGTCATAGGAAAGAGGAACGTGAACGTAGACACATGGCTGCTCTCCCCTACAATTACCTTGTCTATCCACCCTCTTCCATTTGGAAACACTGAAATCTGAACACATGCATGTACAGTAGAGCTTTCTCTTATGCCAATGAGCCAGTCAGTTCTATTCCCCTAGTTTGCTCTGCGTTTATTTATTTCATGTCCCATTTTCATGTCATCTCTTGTTTATCAATCGTTCAATTCCATTGTGCTTGTTGCCCCTCTACATATCATTGATATGAAGTTGCTCCCTTTGAGACTGGATGGAGATTGGATCATTTATCACAGACAATCTCAATTCTATCCCTAATGATCTGAATGTAAGTGGTCTCTTCTCTCTAGTTTCATGGGCTTTTGTTGTCGGTTATTGCACTAAGATTGTACAGAGCTTCTACTAAAATCCTGTCCCATCTCACTTGTTTTTTGGACAGTAGTTTTTCTATGGCAGACCCATTCTAGGCATTTGATTTCTGTGCTTGGAGCCCTATGATGTCATGAGTGCTCTTTGGCACATCTGGGCAGAGGGTTCCACTCAAAGCTAACGAATGGAGACTAAAGCTTGTGTGTTGAAGtgaccgagagagagagtgtgtgtgtgtgtgtacacttggAGGATGTAcaggtatgtgtatatatagtgttgtattaatcaTAGTAACACAAGGCAGAGGCAATGGGGGTTAAGCTCTGCTGTTTGATTGGAAGGTCATCCTGTTTTTGGAGAAACTTCCCATGATGGGGGTGTGTGTACTCATAATATTTGTTGATTTTTGAATTTTGAGGCTTCCGTAGTGTCTTTGTTGTTGACTACcgatgtcagattttttttattcaagAATGGAAGTCTTTAATGATAAGTCAATTGATTACCCCTAACTTAATGAAAAGCAAACAGTCTGAAAAATAGTAAGGTGGTTTTTGATAATGCTATGTGAAATGTGTTCAATCAGATATGAGGAAAGTATTGGTTGTGGAGGATGTTTTCAGGtctgtagaggtgtgtgtgtgtgtaagggtttTGTACTTGGTCTGCATTAATTGCTGAACCAACTCTACCCTGAAGTGCAGCACTTTTCACAGTAGGACTTGACACAGTTTCTCTTGAAAGTGAATGGACTGTTACCCCTATCTGAATTAAATTCCTGGCTTAGCGTTCTCTTATGCTTATGAAAAATATTGTAATTAAAAAAAGTTAACTTTTGTTTTGGGAGTAGTAAAACCAAAAGAAAATCTTTTCAAATAATTTAAAATGCCATTATTTTGACGGTGACGAGAGATACAAGTAATAGATTAAACTGAtttctcccccccaccccccccaacaCAGACTTTCTAATTCAATGTTTATTTtgaatggatgtgtgtgtgattgaacAGATGATTTAGAGACAGTTGAAAGTTTTCTGTTGTAAAGGAGCTGTATATACTGTAACTGTGTAAGAtattgtacagtatattcattcTGCCTGGTGTGGGAATAAAGGTAATGGCTGTTTGTAGTGTTGCTAGCAGCCCAGAGCGTTTGTCTGTTTGTGTGAGCATTTGTTGGACACACAGCTGAGGTGAAGGGGTAGGCGTGATGTCTTTGTATTAAATCAAAGGTTAactaaattaaaatatatttattaggCATAATTATCCAAACTAATCCGTTTTAATGCAATGTAGGCTGTTTGGGGACGTTGAAGGATCGTTGAGCTTCCAACACTACATTTCTGATGTGATTTCTCCTGTAAGATTTATTTTCTCCCCTCCTGAATAAAACTGATTGAGCAAAGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU440594 lncRNA downstream 137 30212692 ~ 30217966 (-) True G387938
TU440597 lncRNA downstream 6217 30168119 ~ 30211886 (-) False G387939
TU440598 lncRNA downstream 7038 30168119 ~ 30211065 (-) False G387939
TU440453 lncRNA downstream 358277 29844443 ~ 29859826 (-) True G387816
TU440309 lncRNA downstream 509090 29708790 ~ 29709013 (-) True G387728
TU440664 lncRNA upstream 33720 30277092 ~ 30277316 (-) True G388003
TU440667 lncRNA upstream 36433 30279805 ~ 30280114 (-) True G388006
TU440675 lncRNA upstream 39957 30283329 ~ 30283585 (-) True G388014
TU440681 lncRNA upstream 43398 30286770 ~ 30287340 (-) True G388020
TU440704 lncRNA upstream 56865 30300237 ~ 30300535 (-) True G388043
XR_005051714.1 mRNA downstream 38485 30177488 ~ 30179618 (-) True LOC118964583
XM_021604629.2 mRNA downstream 84566 30109646 ~ 30133537 (-) False LOC110524741
XM_021604630.2 mRNA downstream 84566 30109646 ~ 30133537 (-) False LOC110524741
XM_036977263.1 mRNA downstream 84566 30109646 ~ 30133537 (-) True LOC110524741
XM_036977243.1 mRNA downstream 113415 30102566 ~ 30104688 (-) True surf2
XM_021602459.2 mRNA upstream 1158 30244530 ~ 30255397 (-) False haus4
XM_036977264.1 mRNA upstream 1158 30244530 ~ 30257109 (-) True haus4
XM_036977273.1 mRNA upstream 612170 30855542 ~ 31286199 (-) False LOC110523598
LOC110522855 mRNA upstream 1353686 31597058 ~ 31597647 (-) True LOC110522855
XM_021602462.2 mRNA upstream 1535893 31779265 ~ 31942907 (-) True LOC110523605
TU440596 other downstream 6217 30210763 ~ 30211886 (-) True G387939
TU440406 other downstream 389795 29822744 ~ 29828308 (-) True LOC110523591
TU440412 other downstream 393533 29821467 ~ 29824570 (-) False LOC110523591
TU445209 other upstream 3108045 33351417 ~ 33352338 (-) True G392227
TU445234 other upstream 3137420 33380792 ~ 33381565 (-) True G392245
TU445496 other upstream 3490790 33734162 ~ 33762381 (-) True G392503
TU445896 other upstream 3904091 34147463 ~ 34148628 (-) True G392858
TU448525 other upstream 5609418 35852790 ~ 35853357 (-) True G395297

Expression Profile