RNA id: TCONS_00032107


Basic Information

Item Value
RNA id TCONS_00032107
length 364
RNA type processed_transcript
GC content 0.45
exon number 1
gene id XLOC_016282
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 19362798 ~ 19363161 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACGACGCGACAgtcccttttcccattgaacgccttgagagCAAAACGCCTGCTttacgggcacaaactgtcgcaaaagactgctgaaattggagccttgacatgcgcagaaggtctgtctgatggagccagaggaggagccgcgaaaatgagcggagtcgagcttccaaccaaacgctttatgtaaaatcaaccacgccccccgaacttctcactcgactgccggtgtctgcactataacaaacgctcactgatgtaaatagaagcacttacattaaaaaacacaataatatacggtttaaaacggtgtgatgtaagctgttaaactttaataaaagcaatacatggtggactgcagaaataaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000162512

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00032104 lncRNA downstream 93501 19252270 ~ 19269297 (-) True XLOC_016280
TCONS_00033799 lncRNA downstream 181229 19152372 ~ 19181569 (-) False XLOC_016278
TCONS_00032099 lncRNA downstream 181229 19152372 ~ 19181569 (-) True XLOC_016278
TCONS_00033798 lncRNA downstream 181245 19152372 ~ 19181553 (-) False XLOC_016278
TCONS_00033797 lncRNA downstream 257356 19100422 ~ 19105442 (-) False XLOC_016276
TCONS_00033800 lncRNA upstream 15950 19379111 ~ 19382322 (-) True XLOC_016283
TCONS_00032114 lncRNA upstream 196931 19560092 ~ 19565273 (-) True XLOC_016288
TCONS_00033360 lncRNA upstream 229293 19592454 ~ 19595061 (-) True XLOC_016291
TCONS_00032118 lncRNA upstream 238535 19601696 ~ 19621644 (-) True XLOC_016292
TCONS_00033801 lncRNA upstream 761833 20124994 ~ 20148358 (-) False XLOC_016295
TCONS_00032105 mRNA downstream 8176 19280829 ~ 19354622 (-) False XLOC_016281
TCONS_00032106 mRNA downstream 40871 19281793 ~ 19321927 (-) True XLOC_016281
TCONS_00032101 mRNA downstream 128329 19217586 ~ 19234469 (-) False XLOC_016279
TCONS_00032100 mRNA downstream 128430 19217586 ~ 19234368 (-) False XLOC_016279
TCONS_00032103 mRNA downstream 128469 19231118 ~ 19234329 (-) True XLOC_016279
TCONS_00032110 mRNA upstream 155359 19518520 ~ 19520324 (-) False XLOC_016285
TCONS_00032111 mRNA upstream 155515 19518676 ~ 19520690 (-) True XLOC_016285
TCONS_00032115 mRNA upstream 211335 19574496 ~ 19576640 (-) False XLOC_016289
TCONS_00032116 mRNA upstream 211489 19574650 ~ 19630297 (-) False XLOC_016289
TCONS_00032119 mRNA upstream 264973 19628134 ~ 19630297 (-) True XLOC_016289
TCONS_00032102 other downstream 140365 19217738 ~ 19222433 (-) False XLOC_016279
TCONS_00032082 other downstream 1969990 17339418 ~ 17392808 (-) False XLOC_016272
TCONS_00032083 other downstream 1970079 17353831 ~ 17392719 (-) True XLOC_016272
TCONS_00032073 other downstream 2418407 16944272 ~ 16944391 (-) True XLOC_016269
TCONS_00032069 other downstream 2746743 16615940 ~ 16616055 (-) True XLOC_016267
TCONS_00032108 other upstream 143150 19506311 ~ 19513296 (-) False XLOC_016284
TCONS_00032109 other upstream 144939 19508100 ~ 19512644 (-) True XLOC_016284
TCONS_00032112 other upstream 160425 19523586 ~ 19523683 (-) True XLOC_016286
TCONS_00032113 other upstream 176519 19539680 ~ 19559171 (-) True XLOC_016287
TCONS_00032117 other upstream 216421 19579582 ~ 19579679 (-) True XLOC_016290

Expression Profile

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