RNA id: TCONS_00032264


Basic Information

Item Value
RNA id TCONS_00032264
length 2506
RNA type mRNA
GC content 0.43
exon number 9
gene id XLOC_016377
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 24386453 ~ 24407933 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACAGTAAAAGAATCAACGACTTATTAATAACATATGAGCAAAAAAGGAACGATCCTTACTTTCTGGAGAAGAAGGAAAGATGTGAATATCTGAAAGCCAAACTAAGCCACATCAAGATGAAAATTCGTGATTTTGAGCAAAAATTCAATGCAAAGGACAGCAATTACTGAAacattttcatccatccattcattttcctttagataagtcccttatttatcagaggtcaccacaaagaaatgaaccgccaactattccagcatatttttttacacagcggattctagccgcaacctagtactgggaaaactaaaacatttttttttatttaatttaataaatttttacaatattatctcagcattattgttgttattattttctcttttcttttttgcaaagAAATCAAGTAATTTTTCTCAAGCTAACCCACCacctatatgtatatatgtaaccACCATATATAgatatcatattttatatttttggtatttaaatttttttatgtaaatgttttgcAGTATTATATTTAAGTGTTTTAGAAAACAAAGTAATTGTGAGAATCCACATGAAATCCTAATTTAAAGagaatttttaaacaaaacatgtaAAATCAGCCTTGCACTGCCGCTTTAAGGCacattaaaacattaacaatCATTAACTCGGCTTACAGTTTGACTCACTGAGACTGATAGTGTCGGTATCAAGGGTTGGATTGGGTTTAGAGTTTCAGGCCCAGGTCTTCTACTGGAGTCACCATAAGCAGCAGCTGTCACAAGTGTTCTCATCCAATGGAGAAACTCAAGCGCTAAACAACACCTGACAGAAAACTGAACTCAAAACAGGGAAAACACCAGCTGCTACTGAGTTACGATTCTCTCATGAATCATGTACGAGACGCAGCAGTATGACAGTCCACCGCAATACAGTCCACACTACACCGCTCCATCAAATATGTACACATCCAGAAGTTTCTATTCTCAGAGGAGCGAGTTTGGCCTGTACTCTTCAGTCCCCGATGCCCCTCATGCGCTGGGAAATCCTCAGCACTTCTACAGATGGTTCTCTCCCCCTGGCATCGTCAAGACTATGGAGGGACTCACTGCTCTGCTGTGTTTCATCATTTTCGCTTGTGTTGCGTCCACTTTAGTTTGGGATATGCCCGGTTATGAGGGCAGCATCGGTGGCTATATTGCCGGATCTGGAGGTTATGGCGTTGGATCTGGGTATTATGGTGGAACCTACGGCTATCAGAGCTCTTACATGACGCCCTACTCTGCAAAGTCAGCCATGATTTCGATGGCAGCTCTTAATTTTGTGGTGTCTTTGACCTTCCTGGTGGTGAGCTTCTCAAAGATGTGGTGTGTGCGCGGAAAAGCCTTTTACCTGACAGTTTTGGTGGTGGATGTGGTTCTGGCGATCCTGCAGTGTATTATAGACATTGTGTTTGTTATTGGGGTGAATCCCATGGCTCAAAGTTCACAGAGCATCTTATACAACCCCATCCTGATGATGTGTCAGAGCTCATTAGGGACTCCCAGCATCAGCGCCGGAGTCAACACTGGAGGCTTTCCTGGCGCATATCCGTCCTTCAACCGATATCTTTATCACTACTGCTTCATGGATCCTGAGGAGGCTGTGGCTCTGGTTTGTGGGCTGTTTGTCATGATTGCTCTAATCATTGCAGCCTATTTTGCCTATAAGACTCGAAGCAAAATATGGCGTCACGGCAAACCTAACATCTACTGGGAGGAACCACCGATCCTCAGAACAAACCGGAGCCAGAATTCACAAGACTGGCGAGGCACTCAATACACCCCCACTGTGGTTTTATCAGAGAAAGCGTCCCCTCATCTGAAAGCTGAGAACAGCTTCACCTCCTACACCGAGGGAACCGTGAGCGTCTACAGCGAGGGCGGGTACAAAAGCAACGTGTATTCTGAGAATGTAAAGGGTTTCAGCCCGGAGCCGCTGTACCAGAATCAGTGGAGGAGCTCCAGTCCTGTGGAGGAAGTGGAAGTACAGAGCAGATCAGTTGCAGAGAAAGCTGAAGTGTTTGAGGTGGAGGATGTTCTCTGTGAGACCGGCTACACCACTGCTGCAGATTCAGCCACTGAATTACACACATACGAGCTGGAGGACACTTATTCAGAAATTACAACAGATGAACAGCGCAGACAGTACAAGAAACAGTTTGACGTCACCTTCGCTGTGTACAAGAACCTCCGTGCAGAATTGGACGATATCAGTGATCAAATGAATGAACTGAGCCAAGAGCTGGACACCCTCCACGAGGAGTCCACCAAATTCCAGGCTGTAGCTGATGAATATAATCGACTTAAGGATCTGAAACGGTCTCCAGAATATAAGACTAAGAAGCTCCAGTGTAAGAAACTACGGCAGGAACTGTGCCGTATCAAGCAACTGGTGAAGAATTATGACCAAGGCTATAAAAAGAACATGAAGACTTATGTTGCGGATCCTCAGGATTTCTTTGTCTGA

Function

GO:

id name namespace
GO:0070830 bicellular tight junction assembly biological_process
GO:0005886 plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0030054 cell junction cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-061013-134 Predicted to act upstream of or within bicellular tight junction assembly. Predicted to be located in bicellular tight junction and plasma membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDART00000177510

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00032249 lncRNA downstream 69105 24310635 ~ 24317436 (-) False XLOC_016374
TCONS_00033830 lncRNA downstream 69317 24310635 ~ 24317224 (-) False XLOC_016374
TCONS_00033829 lncRNA downstream 69333 24310635 ~ 24317208 (-) False XLOC_016374
TCONS_00033828 lncRNA downstream 69336 24310635 ~ 24317205 (-) False XLOC_016374
TCONS_00032256 lncRNA downstream 69347 24314227 ~ 24317194 (-) False XLOC_016374
TCONS_00033831 lncRNA upstream 124971 24528124 ~ 24536126 (-) True XLOC_016382
TCONS_00033832 lncRNA upstream 142327 24545480 ~ 24545941 (-) True XLOC_016383
TCONS_00032278 lncRNA upstream 149224 24552377 ~ 24554432 (-) False XLOC_016384
TCONS_00032279 lncRNA upstream 149300 24552453 ~ 24554432 (-) True XLOC_016384
TCONS_00032281 lncRNA upstream 151864 24555017 ~ 24565293 (-) False XLOC_016385
TCONS_00032261 mRNA downstream 17454 24365452 ~ 24369087 (-) True XLOC_016376
TCONS_00032259 mRNA downstream 37593 24321866 ~ 24348948 (-) False XLOC_016375
TCONS_00032258 mRNA downstream 37899 24321751 ~ 24348642 (-) False XLOC_016375
TCONS_00032248 mRNA downstream 69301 24310635 ~ 24317240 (-) False XLOC_016374
TCONS_00032246 mRNA downstream 96898 24287043 ~ 24289643 (-) False XLOC_016373
TCONS_00032271 mRNA upstream 7341 24410494 ~ 24462277 (-) False XLOC_016378
TCONS_00032272 mRNA upstream 10554 24413707 ~ 24444946 (-) False XLOC_016378
TCONS_00032273 mRNA upstream 24394 24427547 ~ 24444838 (-) True XLOC_016378
TCONS_00032274 mRNA upstream 84167 24487320 ~ 24488652 (-) True XLOC_016379
TCONS_00032275 mRNA upstream 92651 24495804 ~ 24505185 (-) True XLOC_016380
TCONS_00032260 other downstream 45685 24337873 ~ 24340856 (-) True XLOC_016375
TCONS_00032255 other downstream 69317 24313763 ~ 24317224 (-) False XLOC_016374
TCONS_00032251 other downstream 69333 24311767 ~ 24317208 (-) False XLOC_016374
TCONS_00032254 other downstream 69336 24313745 ~ 24317205 (-) False XLOC_016374
TCONS_00032244 other downstream 105746 24278839 ~ 24280795 (-) False XLOC_016373
TCONS_00032276 other upstream 102822 24505975 ~ 24506090 (-) True XLOC_016381
TCONS_00032280 other upstream 154974 24558127 ~ 24560752 (-) True XLOC_016385
TCONS_00032289 other upstream 551162 24954315 ~ 24956898 (-) False XLOC_016393
TCONS_00032296 other upstream 752689 25155842 ~ 25155958 (-) True XLOC_016398
TCONS_00032302 other upstream 1449526 25852679 ~ 25853799 (-) False XLOC_016403

Expression Profile

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