RNA id: TCONS_00032275


Basic Information

Item Value
RNA id TCONS_00032275
length 3581
RNA type mRNA
GC content 0.40
exon number 2
gene id XLOC_016380
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 24495804 ~ 24505185 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGAAAGAACAGCAATGGGATTATGGCTTCAGTGAGGTGGGGCAAATCCTAACTCTTGATCTTCAGTTGAGCTGAAACAAATACAGTtgctttttctttctgtcttttttagCTTTATTGCAAACTCTCAAAATATAGAAGCAGTGGAATATGTTTTCTCCGTTTGTTTGGACACTTCCTTGAGACTTCGAACAGGATGTGTACAATTTGACTGTGGAATCTTCCTTCTGTGGCATTTTTAAGAGACACATTACCTTCACGCACATTGTTTAAGACGTAACTGCAAAATGGATCAACCAAGAAGACAtctgaaaaaactgaaaaagagaCGTTCAAGTCTTTTCGCAAGCGCCAAACTCAATGCCAGCTTTTCACAGAGTATAGAGGAAGAAGAGAGTGCCTTTCCTTTTTCACAAGACAGCTCTGTGAAACCTTGGACTTCGATGGATAACCTCGACACTCCGTCACCTCAGAAGACTGACAGAAGAGAGCAAGAAAAGAGGAAAAGCAGTGAGGTCGAAGCGGCGAAGATGCCACACCGCCATTCAACTGTGATCAATGTTAATGTAGGTGGGAAAGTCTTCACGATTCCCAAACACCTGGCTGTCAGATACCCTAAAACCAGAATAGGAAGCTTAGCCCTGTGCAAAGACCCCATCAAGCAGCTCAATCTCTGCGATGACTATTGCGTGCTCACCAATGAGTTTTTCTTTGACCGAGATCCGACTTTCTTCCACTACATCTTCCACTTTTATTGTAGCAACGTATTATGGGTAATGGAGAGTCTTTGCCCTGTCAACTTTGAGGAAGAGATGCAGTTTTGGGGTTTGCATTTGAGGGACAGCCCTCGATGTTGCCGGATTCTCTACGAGGAGAAAATAGATGAAATCAGAGATCAGCTGAAAGTGAACAGGGAGCTTATGGCGGAAATCGAGCCTAGGCACAGCGAGGAGGGTTTCAAGAGTATGTTTTTAGGTGATGTTCGTAAGGTGCTATGGGACCTGATTGAGAACCCATACTCCTCGATGTCCGCTAAGGCCTTTGCTGTGTTCTCAAGCCTTTTTGTGCTCATCTCCATAGTGGCAATGACTCTCAATACTGTGAGCGAGCTGAAAGATTATAAAGTCTATGGCAGAACCTACATGGAGTGTGTGGAGATCACCTCCATTCTCTTCTTCACCTTTGAGTACTTCCTTCGCCTGCTGACGACATGCGACATTAAGCATTTTCTGAAGAGTGCACTTAATTTTGTAGACTTAGTGGCGGTCATGCCCTACTTTATTCAGCTGGTTTTTGAGGCTTTTGCAGACCAGGAGGATGTCAGTGTCCAAGATGACCTGAAAACAATGGCGAGGGTTAGCAAAGTTAGCAAAATACTTAAAGTTGTCAAACTCATGCGGATCTTTCGCATCCTGAAACTGGCGAGGCACTCGACGGGCATGCGAGCGTTTGGCTTCACTCTTCGCCAGTGTTTTGAACAGGTCTGCTGTCTGTTTCTCTTCATCATCATGGGGATCTTCACCTTCTCCGCCCTCATGCACTCGGTGGAGCAGGACGTGGCAGGAACGCCGTTTAGCAGCATACCAGATGCCTGGTGGTGGGCAGCGGTGAGCATTTCCACTGTGGGATATGGAGACGTGGTGCCCATTTCCTACTCCGGTCGAGTGGTGGCCTTTGGCTGCATTtcttttggtatcattttaaatggaaTGCCAATCTCCATCCTGTTCAACAAATTTTCTGACTATTACGCCAAGCTAAAGGCTCAGGagtgcacaaacacaaacatccaGAGGGGTCTGAACCTCAAGAAAAGACTGCGGAAGAAATTCGACAACTGCTTCGAGCCTCAAACCGAGGAGTCTGATGAGGACAGCAGGCATCACACCGGCCAGTGTCAACACTAACCGTCCATGTTGGTCATTCTGCCTTCACTCCCCTCGAACAGTGAGCCCAGGTTCCCAGCCTGCCTTGAATGAAACAGGGGTTTAACTGATGGGTGAAATTCAGGTTAAAGGACATAAGGCCATTAGCATTAGGGTGGCTTACAAACGGCTTGGACATTTCTGTTCGTTTGTCGAAGTACGTATGTTAAATAATCATAGGGCCATTATAATGTCTGGAAAAAGGATAGAATCTGCAATTTACttaataaaaagtacaaaagctgatatatatatataaagtgctggacaacaacaacaataaataagtcTTGATGTTGGAATGAACGAGTGGTTTGGTTCACAAGTAATGCATGCAGTGTTCAATCCAACTTTTGTATCACTATAAAAGGACACGGACGCATAAACTTCATCTCCAGAGCTGCTCTAAGAATCAATTTATctgcatttttacaattttatctgCGGGAAACTGTTGTTATATCATGTAGACATGAAAACTGAACTATCTTCACAACAAATTTTTAACTAACTTGAAAACACTGTGACAGAAATATAATCCCAATTACTATTGTACTGtggaatgtaaataaataaacaacaggacAATTTCATAATTTGTCttgcataaataattttttaatagaaGATAAATGGAAGTAGAATTTATATAATCATTTTCATGATTTCAATTGATTAGACAATTAGAGTgctaaattgaattgaatcattaaAAATGGTTTCAATTTTGAATTTGGATTCAGTTAGTAATCTGATATCTAAAACTGAAGAAATAAATGCCATTTTCAATCCTTTTATTTAACTCTATACATCTGAAGTTCCATCTGACCCACAGGCTATGATTTATTTTCTACAAAGTTTAAATGTCATCACAGTTGATTCAGATGCCACAATCCTTGATGCCCCCTagacattaatgaaataaatCTGGCAATTAAAACTGTGTGCTGCATTAAAGCCCTGAGGCCTGATGGCTTTACCGTTGAAATGTTAAAGAAATTTCAGAATAATCTAACCCCCCTACTTTTACCAGTGTAGATGGAATCCCTAGAGCATGGTTACTTACCAGAGACACTCATAGTTCTCTAATTCtccttttaaaaagaaaaaaaaatcctaatagtCCTAATATCCTAATAATCCTAATTGTTCCTATCATTCTTTCTCTTTACAAAATGTAGATGCCAAGATATTGGCCAAAGTATTAGCCTTTCGTCTTAAAAATGTACTTCCAAAAATTGTATCAGATGAACAAACGGGCTTTATCAAAGgcagacaattattattattttggacaAAGAGAAGTATTTTGAACAATCCGATTTTTCAGGTCACATGATTCATCATTGCCAAGTGGTAGAATTGCGCAGAATAGATAAACAAACTAGAATCCTGAGATTCTGTTGAAGTTTCTTCCTCAATTAATACAAATAGGATTTCCGAGGATCAAATGAGACTTATGTGGCCTTCAGATATCTTTGGTGTATTTGGAGTGTTGCTTTTACTGTTTCTGTTCTTGGTGAGGTGCTTTTAGAGACCGTGTCTTTGACTTCATAAACATGTTTCCACTTCAGTAAGCACTTTATCAAccctttagatcagtggttctcaaacttatttcaccaagtaccacctcagaaaaaaagtctctccaag

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0051260 protein homooligomerization biological_process
GO:0055085 transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0006813 potassium ion transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008076 voltage-gated potassium channel complex cellular_component
GO:0005216 ion channel activity molecular_function
GO:0005244 voltage-gated ion channel activity molecular_function
GO:0005249 voltage-gated potassium channel activity molecular_function
GO:0005251 delayed rectifier potassium channel activity molecular_function
GO:0005267 potassium channel activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-704 Predicted to enable delayed rectifier potassium channel activity. Predicted to be involved in potassium ion transmembrane transport. Predicted to act upstream of or within several processes, including potassium ion transport; protein homooligomerization; and regulation of ion transmembrane transport. Predicted to be located in membrane. Predicted to be part of voltage-gated potassium channel complex. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDART00000052065

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00032266 lncRNA downstream 104849 24388454 ~ 24390955 (-) False XLOC_016377
TCONS_00032256 lncRNA downstream 178610 24314227 ~ 24317194 (-) False XLOC_016374
TCONS_00032257 lncRNA downstream 178613 24314336 ~ 24317191 (-) True XLOC_016374
TCONS_00032253 lncRNA downstream 178638 24313732 ~ 24317166 (-) False XLOC_016374
TCONS_00032252 lncRNA downstream 181060 24313726 ~ 24314744 (-) False XLOC_016374
TCONS_00033831 lncRNA upstream 22939 24528124 ~ 24536126 (-) True XLOC_016382
TCONS_00033832 lncRNA upstream 40295 24545480 ~ 24545941 (-) True XLOC_016383
TCONS_00032278 lncRNA upstream 47192 24552377 ~ 24554432 (-) False XLOC_016384
TCONS_00032279 lncRNA upstream 47268 24552453 ~ 24554432 (-) True XLOC_016384
TCONS_00032281 lncRNA upstream 49832 24555017 ~ 24565293 (-) False XLOC_016385
TCONS_00032274 mRNA downstream 7152 24487320 ~ 24488652 (-) True XLOC_016379
TCONS_00032271 mRNA downstream 33527 24410494 ~ 24462277 (-) False XLOC_016378
TCONS_00032272 mRNA downstream 50858 24413707 ~ 24444946 (-) False XLOC_016378
TCONS_00032273 mRNA downstream 50966 24427547 ~ 24444838 (-) True XLOC_016378
TCONS_00032270 mRNA downstream 87871 24402892 ~ 24407933 (-) True XLOC_016377
TCONS_00032277 mRNA upstream 43064 24548249 ~ 24554416 (-) False XLOC_016384
TCONS_00032282 mRNA upstream 72868 24578053 ~ 24603325 (-) True XLOC_016387
TCONS_00032283 mRNA upstream 391807 24896992 ~ 24898226 (-) True XLOC_016390
TCONS_00032284 mRNA upstream 395386 24900571 ~ 24901912 (-) True XLOC_016391
TCONS_00032285 mRNA upstream 397623 24902808 ~ 24907741 (-) True XLOC_016392
TCONS_00032260 other downstream 154948 24337873 ~ 24340856 (-) True XLOC_016375
TCONS_00032255 other downstream 178580 24313763 ~ 24317224 (-) False XLOC_016374
TCONS_00032251 other downstream 178596 24311767 ~ 24317208 (-) False XLOC_016374
TCONS_00032254 other downstream 178599 24313745 ~ 24317205 (-) False XLOC_016374
TCONS_00032244 other downstream 215009 24278839 ~ 24280795 (-) False XLOC_016373
TCONS_00032276 other upstream 790 24505975 ~ 24506090 (-) True XLOC_016381
TCONS_00032280 other upstream 52942 24558127 ~ 24560752 (-) True XLOC_016385
TCONS_00032289 other upstream 449130 24954315 ~ 24956898 (-) False XLOC_016393
TCONS_00032296 other upstream 650657 25155842 ~ 25155958 (-) True XLOC_016398
TCONS_00032302 other upstream 1347494 25852679 ~ 25853799 (-) False XLOC_016403

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000004_07755406_07758041.mRNA True 1859 mRNA 0.45 2 CI01000004 7755167 ~ 7758041 (-)