RNA id: TCONS_00032252


Basic Information

Item Value
RNA id TCONS_00032252
length 801
lncRNA type retained_intron
GC content 0.41
exon number 3
gene id XLOC_016374
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 24310635 ~ 24317436 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACTTTGTTTGAAGCTGGTGAATAAACTCTGTTAGGAACTAGCTGACGAATGGGATAAAGCCAGTTCTGATTGGTGGAGGTATGTGGAAATCATAGCTTCCTTACTCTAATAATATGACACTTTATTTGTCAGCGAATTGACTCCATACTACAGACAAGGCATCGTCTGATTTGCTCAatagttttatttcttttgttttcagcCCAGGAAGTTCAAGCTAAACTATGCAACATATGGGAAAAGGCCAGAGCCTGGCCCAGAGTTCTCTGTCTTTGTTGGCGATCTCACATCAGAAGTGGATGACTACCAGCTACATCAGTTCTTTCTGAAAAAATTCCCTTCATGTAAAGGAGCTAAAGTTGTCACAGATCCCTATGGGAACTCCAGGTATGAAAAGCTGCAGCTATCACATGTGTACCGTATAACCTTACTTGGCTTTCTTTGACAGTTTGACCTACTGATGTTGACAACAGATGAGGTAGTTCAACTAGATGTGGTCTCCTTTATCTTTCATTTGATGTCTTATTTTCAGTCGATACTCTTTACCCTCCCTCTCCTAAAAAGGGCCAGACAATACATGGATGTGTTTTGCCGTTGTTGCAAATCTGCTAAAACTATTGTTTTCCCCATATAGGGTAAGCAAGAGCAACTCACAATTGAAGTGATGCTACTTCATGTTAAAAGGGTTATGGCTTTGTCAAGTTTAGCGACGAGAATGAACAGAAGAAAGCCCTCGAGGAGTTTCAGAATGCTTCGGGTCTCGGAGGAAAACCCATCAGGATAAGCATCGCCGTCAACAA

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0008152 metabolic process biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006396 RNA processing biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:0000154 rRNA modification biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0031167 rRNA methylation biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0030684 preribosome cellular_component
GO:0032040 small-subunit processome cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0044452 obsolete nucleolar part cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0005730 nucleolus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003729 mRNA binding molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-040426-2386 Predicted to enable mRNA binding activity. Predicted to be involved in mRNA splice site selection. Predicted to act upstream of or within translation. Predicted to be located in cytoplasm and nucleus. Predicted to be active in cytosol. Orthologous to human TRNAU1AP (tRNA selenocysteine 1 associated protein 1).

Ensembl:

ensembl_id ENSDART00000138230

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00032247 lncRNA downstream 24083 24288759 ~ 24289643 (-) True XLOC_016373
TCONS_00032243 lncRNA downstream 36643 24276551 ~ 24277083 (-) False XLOC_016373
TCONS_00032242 lncRNA downstream 37647 24275317 ~ 24276079 (-) False XLOC_016373
TCONS_00032235 lncRNA downstream 208251 24076013 ~ 24105475 (-) True XLOC_016370
TCONS_00033826 lncRNA downstream 283541 24026569 ~ 24030185 (-) False XLOC_016369
TCONS_00032266 lncRNA upstream 73710 24388454 ~ 24390955 (-) False XLOC_016377
TCONS_00033831 lncRNA upstream 213380 24528124 ~ 24536126 (-) True XLOC_016382
TCONS_00033832 lncRNA upstream 230736 24545480 ~ 24545941 (-) True XLOC_016383
TCONS_00032278 lncRNA upstream 237633 24552377 ~ 24554432 (-) False XLOC_016384
TCONS_00032279 lncRNA upstream 237709 24552453 ~ 24554432 (-) True XLOC_016384
TCONS_00032240 mRNA downstream 24000 24274293 ~ 24289726 (-) False XLOC_016373
TCONS_00032239 mRNA downstream 24000 24274293 ~ 24289726 (-) False XLOC_016373
TCONS_00032246 mRNA downstream 24083 24287043 ~ 24289643 (-) False XLOC_016373
TCONS_00032245 mRNA downstream 24084 24286439 ~ 24289642 (-) False XLOC_016373
TCONS_00032241 mRNA downstream 24085 24274324 ~ 24289641 (-) False XLOC_016373
TCONS_00032258 mRNA upstream 7007 24321751 ~ 24348642 (-) False XLOC_016375
TCONS_00032259 mRNA upstream 7122 24321866 ~ 24348948 (-) False XLOC_016375
TCONS_00032261 mRNA upstream 50708 24365452 ~ 24369087 (-) True XLOC_016376
TCONS_00032262 mRNA upstream 71709 24386453 ~ 24402361 (-) False XLOC_016377
TCONS_00032263 mRNA upstream 71797 24386541 ~ 24398324 (-) False XLOC_016377
TCONS_00032244 other downstream 32931 24278839 ~ 24280795 (-) False XLOC_016373
TCONS_00032238 other downstream 52430 24261217 ~ 24261296 (-) True XLOC_016372
TCONS_00032199 other downstream 1312356 22994021 ~ 23001370 (-) False XLOC_016345
TCONS_00032186 other downstream 1416325 22897285 ~ 22897401 (-) True XLOC_016343
TCONS_00032172 other downstream 1879180 22434430 ~ 22434546 (-) True XLOC_016331
TCONS_00032260 other upstream 23129 24337873 ~ 24340856 (-) True XLOC_016375
TCONS_00032276 other upstream 191231 24505975 ~ 24506090 (-) True XLOC_016381
TCONS_00032280 other upstream 243383 24558127 ~ 24560752 (-) True XLOC_016385
TCONS_00032289 other upstream 639571 24954315 ~ 24956898 (-) False XLOC_016393
TCONS_00032296 other upstream 841098 25155842 ~ 25155958 (-) True XLOC_016398

Expression Profile

//