RNA id: TCONS_00032240


Basic Information

Item Value
RNA id TCONS_00032240
length 6292
RNA type mRNA
GC content 0.45
exon number 37
gene id XLOC_016373
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 24274293 ~ 24289726 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGGGAGGAGACTCATAGGTCAGCTGTCTTTGACCTTATAGGGTTCGGAAATCCAGGTTATAAAACCCAACTCTGCCATTGTGTTGAATCTCGGCAAACTTTTCTTTGCTCCCAGTGTTCCTTTTCTTGTGGGCGTTTTCCTAAAACTTAATTTCTGCTATTGTTTATacatgcatatgttttatgggTATATTCTTCTCTTTTAAGTTTTAGGTGAAATCGCAAAAACCTGGAGCTTCCTTCTGCTGTGATTAATCGCTTTGGTTGACAATGGGCGATGCTGAAATGTCTGTTTTTGGGGCCGCAGCGCCTTACCTGCGGAAGTCTGAAAAGGAGCGTCTTGAGGCGCAGACGAAAGCCTTTGACTTAAAGAAGGAATGCTTTGTGCCGGATGCAATAGAGGAGTTTGTTAAAGCCACCGTCGTGAGCCGAGAGGGTGACAAAGTCACTGTGGAGACACAAGGAGGCAAGACTGTGACTGTCAAAGAGGCAGATGTTCTGCAACAGAACCCTCCCAAATTTGATAAAATTGAAGACATGGCAATGCTGACCTTTCTCCATGAGCCAGCAGTGCTGTTTAACCTCAAAGAGCGCTATGCAGCATGGATGATCTATGTGAGTATACTAAAATCTCAGCTTAATCTCTGCAACCAAATCTTTACTTTAAATCAAAACTTCAACACTTTTGTTCCACAGACCTACTCAGGGCTGTTTTGTGTCACTGTCAACCCCTACAAGTGGCTGCCGGTGTACAATCAGGAGGTTGTTATAGCCTATAGAGGGAAAAAGAGGACTGAAGCTCCTCCCCACATCTATTCTATCTCTGACAATGCCTACCAATACATGTTAGCAGACAGAGAAAACCAGTCTATCCTTATCACTGGAGAATCTGGCGCTGGGAAGACTGTCAACACTAAAAGAGTCATTCAGTACTTTGCCAGCATTGCAGCAAGTGGAGGGAAGAAAGACCAAGACAAGAACAAGGGAACACTGGAGGATCAAATCATCCAGGCTAACCCTGCCTTGGAGGCATTTGGTAATGCTAAGACCATCAGAAATGACAACTCCTCCAGATTTgGTAAATTTATTAGAATTCACTTCGATACAAGAGGGAAGCTGGCATCTGCTGACATTGAAACATATCTCCTGGAGAAGTCCCGTGTCACCTTTCAGTTGAAGGCTGAAAGAGACTATCACATCTTTTATCAAATCTTATCCAACAAAAAACCTGAAATCCTTGAGATGTTACTAGTGACATCAAACCCCTATGACTACGCATTCATCTCTCAGGGAGAGACCACAGTTCCCTCCATTGATGATTCTGATGAGTTAATGGCAACTGACAGTGCCTTTGATATATTGGGCTTCACACAAGAAGAAAAGAACTCTGTGTACAAGTTAACTGGAGCCATTATGCATTACGGCAATATGAAGTTCAAGCAGAAGCAGCGAGAGGAACAGGCTGAAGCTGATGGAACTGAGGATGCTGACAAATCTGCATACCTAATGGGCCTAAACTCTGCTGACCTCATCAAGGGTCTGTGCCATCCAAGAGTCAAAGTAGGAAATGAGTGGGTCACCAAAGGACAGAATGTCCAGCAGGTGAACTATGCTATTGGTGCCTTATCAAAAGCGGTGTATGAGAAAATGTTTCTCTGGATGGTGGTGAGAATCAACCAGTCTCTGGAGACAAAGCAGCCTCGCCAGTATTTCATCGGAGTATTGGATATTGCTGGCTTTGAGATCTTTGATtttaacaCCTTTGAGCAACTCTGCATCAACTTTACCAATGAGAAACTGCAACAGTTTTTCAACCACCACATGTTTGTGCTGGAACAAGAGGAGTACAAGAAAGAAGGGATTGAATGGGAGTTTATTGACTTTGGCATGGACTTGCAGGCCTGCATCGATCTCATTGAGAAACCTATGGGCATCATGTCCATCCTTGAAGAGGAGTGCATGTTTCCCAAAGCCAGTGATGCAACCTTTAAAGCAAAGCTTTACGACAACCATCTTGGGAAATCAAACAATTTCCAGAAACCCAGGCTTGTGAAGGGCAAGCCAGAGGCTCACTTTGCTCTTGTTCACTACGCTGGCACAGTAGACTACAACATTAACAACTGGCTGGTGAAGAATAAGGACCCTCTTAACGAAACTGTGGTTGGATTGTACCAGAAGTCCTCTCTGAAGCTGTTGTCTAATCTGTTTGCCAACTACGCTGGTGCAGACTCAGCAACGGGTGATGGTGGGaaaaaagagaagaagaagaaaggaTCATCATTCCAGACAGTGTCAGCACTTCACAGGGAGAATCTCAACAAATTAATGACAAACCTAAGGTCAACTCACCCTCATTTTGTCCGCTGCCTCATTCCCAATGAGACAAAGACTCCTGGTGCGATGGAGAATCCGTTGGTCATGCATCAGCTGCGCTGTAATGGTGTGCTGGAGGGCATCAGGATTTGCAGGAAGGGCTTCCCCAACAGAATCCTCTATGGGGACTTTAAACAGAGATATCGCATCTTAAACCCTGCAGCTATCCCTGAGGGACAGTTCATAGACAGCAAGAAAGGAGCAGAGAAACTGCTGGGCTCTTTAGATATTGACCACCAACAGTATAGATTTGGACACACTAAGGTATTTTTTAAGGCTGGTCTTCTGGGCCAACTGGAAGAGATGAGAGACGAACGATTATCAAAAATAATCACAGGCATTCAAGCCAAGTCTCGTGGTCTTCTCTCAAGGGCTGAATACATAAAGATGGTAGAACGCAGGGATGCCTTACTTGTGATTCAGTGGAATGTGCGTGCATTCATGGCGGTCAAGAACTGGCCCTGGATGAAGCTCTTCTTTAAAATCAAACCATTGCTGAGATCTGCTGAAGCAGAAAAGGAAATGGCCAATATGAAAGAAGAGTTCTTGAAGCTAAAGGAAGCTTATGCGAAGTCTGAGGCACGTAGAAAAGAACTTGAAGAAAAAATGGTGACTCTTCTCCAAGAAAAGAATGACCTACAACTTCAAGTGCAAGCggAGCAAGACAACCTCTGTGATGCTGAAGAAAGGTGTGAAGGTCTGATCAAAAACAAGATTCAGATGGAGGCTAAAGCCAAAGAGCTCACAGAGAGACTTGAGGATGAGGAGGAGATGAATGCAGAGCTGACAGCTAAGAAGAGAAAGCTGGAGGACGAATGCTCTGAGCTGAAGAAGGATATTGATGATCTGGAGCTCACTCTGGCTAAAGTGGAGAAAGAGAAGCATGCTACTGAGAACAAGGTGAAGAACCTGACAGAAGAAATGGCAGCTTTAGACGATATCATTGCTAAACTGACAAAGGAGAAGAAAGCCTTGCAGGAAGCTCATCAGCAGACACTGGATGACCTGCAGAGTGAGGAGGACAAAGTCAACACCCTCACCAAGGCAAAAGTAAAACTAGAGCAACAAGTGGATGATCTTGAGGGATCTCTAGAGCAAGAAAAGAAAATCCGAATGGATCTAGAAAGAGCCAAGAGGAAACTTGAAGGAGATCTGAAGTTAACCCAGGAGAGCATAATGGACCTGGAGAATGACAAGCAGCAACTGGAAGAAAAACTGAAGAAGAAAGACTTTGAAATCAGTCAGCTCAACAGTAAAATCGACGATGAGCAAAGCATAATTATCCAACTCCAAAAGAAACTCAAGGAGTTGCAGGCGAGAgttgaggagctggaggaagagcTTGAGGCAGAAAGAGCTGCCAGAGCCAAAGTGGAgaaacagagagcagatttagCCAGAGAGCTGGAGGAGATCAGCGAGAGACTGGAGGAGGCTGGAGGAGCTACAGCTGCTCAGATTGAGATGAATAAGAAACGAGAGGCAGAGTTTCAGAAGCTCCGCAGAGACCTTGAAGAGGCCACTCTGCAGCATGAGGCCACTGCCGCCACACTCAGGAAAAAACAAGCCGACAGTGTGGCTGAACTTGGAGAGCAGATAGACAATCTGCAGAGGGTCAAGCAAAAACTGGAAAAGGAGAAAAGTGAACTTAGGCTGGAGTTGGATGATGTAGCCTCCAGCATGGAGCATATTGTGAAGTCCAAGACTAATATGGAGAAAGTTAACAGAACCCTTGAAgatcaaatgaatgaataccGTAACAAATGTGAGGAATATCAAAGGTCCCTCAATGATTTTACAACTCAGAAGGCAAAGCTTCAGGCAGAAAATGATGAATTTTCAAGACAATTAGAAGAAAAGGAATCATTAGTCTCCCAGCTAACAAGGGGTAAGAATTCCTTCAGTCAACAATTGGAGGACCTAAAAAGGCAGTTAGATGAGGAAATTAAGgCAAAGAATGCTCTTGCTCATGCACTGCAGTCAGCCCGTCATGACACAGATCTGCTCAGAGAGCAGTACGAGGAGGAACAGGAGGCCAAAGCAGAGCTACAGCGAAGCATGTCTAAAGCTAATACTGAGGTGGCACAGTGGAGAACCAAGTACGAAACTGATGCCATCCAGAGAACTGAAGAACTGGAGGAAGCCAAGAAGAAACTGGCTCAGCGTTTGCAGGAGGCTGAGGAGGCCGTGGAGGCAGTAAATGCTAAATGCTCTTCTCTTGAGAAGACTAAACACAGACTGCAGAATGAAATAGAAGATTTGATGGTGGATGTGGAGAGATCTAACACTGCTGCTGCTTCTTTAGACAAGAAACAAAGACACTTTGATAAAATCATATCTGAATGGAAGCAGAAGTATGAGGAGTCTCAGTGTGAACTGGAGAGCTCTCAGAAGGAAGCCAGATCTTTGAGCACAGAGTTGTTCAAGTTGAAGAACTCATATGAGGAATCTATGGATCACCTGGAAACCATGAAGAGAGAGAACAAGATTCTGCAAGAGGAGATCTCCGATCTGACTGAACAGCTTGGCGAAGGTGGAAAGACAATACATGAGCTGGAGAAAGTCCGTAAGCAGCTGGAGCAAGAAAAAGCTGAGATACAGGCGGCTCTGGAAGAGGCTGAGGGATCTTTGGAGCATGAGGAGGGTAAAATCCTGAGAACGCAGCTCGAATTTAACCAAATAAAGGCAGACATTGAGCGCAAGCTGAGTGAGAAAGATGAGGAAATGGAACAGGTGAAGAGAAACCAACAGAGGACCATAGACACCCTGCAAAGTGCTTTGGAGTCTGAAACCCGCAGCAGGAATGAAGCTCTCAGAATAAAGAAGAAGATGGAAGGAGATCTGAATGAAATGGAGATCCAGCTGAGCCAGGCTAACAGACAGGCGGCTGAGGCTCAAAAACAGCTCAAGTCAGTCCAAGCTCATCTAAAGGACTCCCAGCTTCAGCTGGATGATTCTCTTCGATCAAATGATGATCTGAAGGAGAACACTGCCATTGTGGAGAGACGTAATGCTCTGCTTCAGGCTGAGCTTGAAGAGCTCAGGGCTGTTTTGGAGCAAACAGAGCGTGGACGCAAACTTGCTGAGCAGGAGCTCCTGGACGTCACTGAGAGAGTACAGCTTCTGCATTCTCAGAACACCAGTCTCATAAATCAAAAGAAGAAGCTGGAGACGGATTTATCCCAGTTTCAGACAGAAGTGGAAGAGGCAGTGCAAGAATGCAGGAATGCTGAGGAAAAAGCCAAGAAGGCCATCACTGATGCTGCCATGATGGCGGAGGAGCTGAAGAAGGAGCAGGATACAAGTGCTCACCTGGAGAGGATGAAGAAGAACATGGAGCAGACCATTAAGGACCTGCAGCATCGCCTGGATGAAGCAGAACAAATCGCTATGAAGGGAGGAAAGAAACAAGTCCAGAAACTGGAGGCCAGGGTCAGAGAGCTGGAATGCGAAGTTGAGGCCGAACAGAAGAGAAGCAGCGAATCTGTGAAGGGAATCCGTAAATATGAACGCCGCATCAAGGAACTTACTTATCAGACTGAAGAGGACCGTAAAAACATAGCCCGTCTTCAGGATTTGGTTGACAAGCTGCAACTAAAAGTCAAAGCTTACAAAAGAGCTGCAGAGGAATCTGAAGAACAGGCAAACGTTCACCTTGGCAAATTCCGTAAACTGCAGCATGAACTGGATGAGGCAGAGGAAAGGGCTGATATTGCTGAATCCCAAGTGAACAAACTTCGTGCCAAAAGTCGTGATGTGGGCCCGAAGAAAGCATTTGATGAAGAATAAAGTCCTGGAAATCTTCTGAAATTACCAGTACTTGCTTGCCTTTCTCTCTATACACTATTGTGTTCCTTAACTTACATGAAATAAAGTCACTCTGCATTTATTCTGTTGTCTTGTGAGTTTCTGGAATCTGT

Function

GO:

id name namespace
GO:0016459 myosin complex cellular_component
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0051015 actin filament binding molecular_function
GO:0003774 motor activity molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061027-393 Predicted to enable ATP binding activity; actin filament binding activity; and cytoskeletal motor activity. Predicted to be part of myosin complex. Is expressed in adaxial cell; cardiovascular system; and myotome.

Ensembl:

ensembl_id ENSDART00000191469

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00032235 lncRNA downstream 168818 24076013 ~ 24105475 (-) True XLOC_016370
TCONS_00033826 lncRNA downstream 244108 24026569 ~ 24030185 (-) False XLOC_016369
TCONS_00033825 lncRNA downstream 245283 24026569 ~ 24029010 (-) False XLOC_016369
TCONS_00033824 lncRNA downstream 327290 23943895 ~ 23947003 (-) True XLOC_016368
TCONS_00033368 lncRNA downstream 490254 23773078 ~ 23784039 (-) True XLOC_016366
TCONS_00033827 lncRNA upstream 20909 24310635 ~ 24317191 (-) False XLOC_016374
TCONS_00033828 lncRNA upstream 20909 24310635 ~ 24317205 (-) False XLOC_016374
TCONS_00033829 lncRNA upstream 20909 24310635 ~ 24317208 (-) False XLOC_016374
TCONS_00033830 lncRNA upstream 20909 24310635 ~ 24317224 (-) False XLOC_016374
TCONS_00032249 lncRNA upstream 20909 24310635 ~ 24317436 (-) False XLOC_016374
TCONS_00032236 mRNA downstream 4231 24252987 ~ 24270062 (-) False XLOC_016371
TCONS_00032237 mRNA downstream 4382 24256520 ~ 24269911 (-) True XLOC_016371
TCONS_00032233 mRNA downstream 204859 24031195 ~ 24069434 (-) False XLOC_016369
TCONS_00032232 mRNA downstream 204859 24031195 ~ 24069434 (-) False XLOC_016369
TCONS_00032230 mRNA downstream 204962 24027744 ~ 24069331 (-) False XLOC_016369
TCONS_00032248 mRNA upstream 20909 24310635 ~ 24317240 (-) False XLOC_016374
TCONS_00032258 mRNA upstream 32025 24321751 ~ 24348642 (-) False XLOC_016375
TCONS_00032259 mRNA upstream 32140 24321866 ~ 24348948 (-) False XLOC_016375
TCONS_00032261 mRNA upstream 75726 24365452 ~ 24369087 (-) True XLOC_016376
TCONS_00032262 mRNA upstream 96727 24386453 ~ 24402361 (-) False XLOC_016377
TCONS_00032238 other downstream 12997 24261217 ~ 24261296 (-) True XLOC_016372
TCONS_00032199 other downstream 1272923 22994021 ~ 23001370 (-) False XLOC_016345
TCONS_00032186 other downstream 1376892 22897285 ~ 22897401 (-) True XLOC_016343
TCONS_00032172 other downstream 1839747 22434430 ~ 22434546 (-) True XLOC_016331
TCONS_00032140 other downstream 3516594 20757582 ~ 20757699 (-) True XLOC_016303
TCONS_00032251 other upstream 22041 24311767 ~ 24317208 (-) False XLOC_016374
TCONS_00032254 other upstream 24019 24313745 ~ 24317205 (-) False XLOC_016374
TCONS_00032255 other upstream 24037 24313763 ~ 24317224 (-) False XLOC_016374
TCONS_00032260 other upstream 48147 24337873 ~ 24340856 (-) True XLOC_016375
TCONS_00032276 other upstream 216249 24505975 ~ 24506090 (-) True XLOC_016381