RNA id: TCONS_00032237


Basic Information

Item Value
RNA id TCONS_00032237
length 5990
RNA type mRNA
GC content 0.45
exon number 39
gene id XLOC_016371
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 24252987 ~ 24270062 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACAAGTCGGACGTTTCATCTGAGGgttCTTCTGCCTCCGCACTTGGTGCACATCAGACAAGGCAATCATGGGGGACGCTCAGATGGCAGAGTTTGGAGCAGCAGCTTCTTACCTGCGAAAGTCAGATCGAGAGCGTCTGGAAGCACAAACCCGTCCCTTTGATATGAAAAAGGAGTGTTTTGTGCCTGATCCAGATGAAGAGTATGTAAAAGCTTCAATCGTCAGTCGTGAAGGTGACAAAGTCACTGTACAGACTGAGAAAAGAAAGACTGTAACTGTAAAGGAAGCTGACATTCACCCCCAGAACCCTCCAAAGTTTGATAAAATTGAAGACATGGCAATGTTCACCTTCCTTCATGAGCCAGCCGTGCTGTTCAACCTCAAAGAGCGCTATGCAGCATGGATGATCTATACCTACTCAGGACTGTTTTGTGTCACTGTCAACCCCTACAAGTGGCTGCCGGTGTACAATCAGGAGGTGGTTGTAGCCTATAGAGGGAAAAAGAGGAGTGAAGCTCCTCCCCACATCTTTTCCATCTCTGATAACGCCTATCAGTACATGCTAACAGACAGGGAAAATCAGTCAATTCTGATCACTGGAGAATCGGGTGCAGGAAAGACTGTGAACACAAAGAGAGTCATTCAGTATTTTGCAAGTATTGCAGCTGGTGGCTCAGCAAAGAAAGAAGGGGCAGAAAAAAAGgGAACCCTGGAGGATCAAATCATCCAGGCTAACCCTGCTTTGGAAGCTTTTGGCAATGCAAAGACCATCAGAAATGACAACTCCTCAAGATTTggaaaaTTCATCCGAATTCATTTTGGTGCCAGTGGAAAGTTGGCATCAGCTGACATTGAAACATATCTTCTGGAGAAGTCAAGGGTGACTTTTCAGCTTAAAGCTGAAAGGGACTATCATATTTTCTACCAAATCCTCTCTCAGCGGAAACCTGAGCTGCTGGAGATGCTGCTCATCACCAACAACCCCTATGACTACGCTTACATCTCCCAAGGAGAAACAACCGTAGCTTCAATTAATGATGGTGAAGAATTGCTTGCCACTGATGAAGCGTTTGATGTACTAGGCTTCACTCAGGAGGAGAAAAATGGCATCTATAAATTGATTGGAGCCATTATGCACTTTGGCAATATGAAGTTCAAACAGAAGCAGAGGGAGGAGCAAGCAGAGGCTGATGGAACTGAAGATGGAGACAAAGTCGCATATCTGATGGGCCTAAACTCTGCTGACCTTATCAAGGGTCTGTGCCACCCAAGAGTCAAAGTAGGAAATGAGTGGGTCACCAAAGGACAAAATGTCCAGCAGGTGTACTACGCTATTGGTGCACTAGCCAAGTCAGTGTATGAAAAGATGTTCCTTTGGATGGTTGTAAGAATCAATCAGTCTCTAGACACCAAACAACCACGCCAATACTTCATTGGAGTGCTGGACATTGCTGGCTTTGAGATCTTTGATTTTAACACCTTTGAGCAACTCTGCATCAACTTTACCAATGAGAAACTGCAACAGTTTTTCAACCACCACATGTTTGTGCTGGAACAAGAGGAGTACAAGAAAGAAGGGATTGAATGGGAGTTTATTGACTTTGGCATGGACTTGCAGGCCTGCATCGATCTCATTGAGAAACCTATGGGCATCATGTCCATCCTTGAAGAGGAGTGCATGTTTCCCAAAGCAAGTGATTCAACCTTTAAAGCAAAGCTTTATGACAACCATCTTGGGAAATCAAATAACTTCCAGAAACCAAGAGCAATCAAAGGGAAGCCAGAGTCTCATTTTTCTCTGGTCCACTATGCTGGTACAGTTGACTATAATATCAACAACTGGCTGGTGAAGAACAAAGACCCATTAAATGAGACTGTGGTGGGACTCTTTCAAAAGTCTACAGTCAAACTTCTGTCAATGCTCTTTGCTAACTATGCAGGGACAGAATCAGATAATGGTAAGGGAGGTAAAGGAGGTGGAAGTAAGAAGAAGGGCTCCTCCTTCCAGACTGTGTCTGCACTCCACAGGGAAAACTTAAATAAGTTAATGACAAACCTAAGGTCAACTCACCCTCATTTTGTGCGCTGCATCATTCCTAATGAGACAAAGACTCCTGGTGCAATGGAGAATCCTTTGGTCATGCATCAGCTGCGCTGTAATGGTGTGCTGGAGGGCATCAGGATTTGCAGGAAGGGCTTCCCCAACAGAATCCTCTATGGGGACTTCAAACAGAGgTACCGAATCCTAAATCCTGCAGCCATACCTGAAGGTCAGTTCATAGACAGCAGGAAAGGAGCAGAGAAACTGTTGGGTTCACTGGATATTGATCACAATCAATATAAATTTGGACACACAAAGGTGTTCTTCAAGGCTGGTTTACTCGGTCAGCTTGAAGAAATGAGAGATGACAGACTATCTCTAATTATTTCTGGAATTCAGGCAAGATCCAGAGGACTTCTTGCAAGGGTTGAGTTCCAAAAGATAGTTGAAAGAAGGGATGCCCTACTGGTTATCCAGTGGAATGTCCGTGCCTTCATGGGGGTGAAAAATTGGCCCTGGATGAAGCTTTTCTTCAAGATAAAACCTCTTCTCAAGTCAGCAGAAGCAGAGAAAGAGATGGCAAATATGAAAGATGAATTTGCCAAGCTCAAAGAGGCTTATGCTAAATCCGAAGCGAGAAGGAAAGAGCTAGAAGAAAAAATGGTGTCTCTTCTCCAAGAGAAGAATGACCTACAACTTCAAGTTCAAGCGGAGCAAGACAATCTCTGTGATGCAGAGGAACGATGTGACCAGCTCATCAAAAACAAGATTCAGCTTGAGGCTAAAGCCAAAGAGCTCACCGAGCGACTTGAGGATGAGGAGGAGATGAATGCAGAGCTGACAGCTAAGAAGAGAAAGCTGGAGGACGAATGCTCTGAGCTGAAGAAGGATATTGATGATCTGGAGCTCACTCTGGCTAAAGTCGAGAAAGAGAAGCATGCTACTGAGAACAAGGTAAAGAACCTGACAGAAGAAATGGCAGCTTTGGACGACATAATCGCAAAGCTGACCAAAGAGAAGAAAGCCTTGCAAGAAGCTCATCAGCAGACACTGGATGACCTGCAGAGTGAGGAGGACAAAGTCAACACCCTCACCAAGGCAAAAGCAAAGCTAGAGCAACAAGTAGATGATCTGGAAGGATCTCTTGAGCAAGAAAAGAAGCTCCGCATGGATCTAGAAAGAGCCAAGAGGAAACTAGAAGGAGACTTGAAATTAACCCAGGAAAGCCTAATGGACCTGGAAAATGACAAGCAGCAGTTAGAGGAGCGTCTAAAAAAGAAAGACTTTGAAATCAGTCAGCTCAATGGGAAAATCGAAGACGAACAAACTATTTGCATTCAGCTGCAGAAAAAACTGAAGGAACTTCagGCACGTattgaggagctggaggaagagcTTGAGGCAGAAAGAGCTGCTAGAGCCAAAGTGGAgaaacagagagcagatttagCCAGAGAGCTGGAGGAGATCAGCGAGAGACTGGAGGAGGCTGGAGGAGCTACAGCTGCTCAGATTGAGATGAATAAGAAACGAGAGGCAGAGTTTCAGAAGCTCCGCAGAGACCTTGAAGAGGCCACTCTGCAGCATGAGGCCACTGCCGCCACACTCAGGAAAAAACAAGCCGACAGTGTGGCTGAACTTGGAGAGCAGATAGACAATCTGCAGAGGGTCAAGCAAAAACTGGAGAAGGAGAAAAGTGAACTTAGGCTGGAGTTGGATGATGTAGTCTCAAACATGGAACATGTTGTAAAGACAAAGGCAAATCTTGAGAAGATGACCAGATCTTTAGAAgaccaaatgaatgaatataaaacaaaatatgagGAAGGTCAGCGCTGCATTAATGACTTCACAATGCAGAAATCTAAACTACAATCTGAAAATGGTGAACTTTCAAGACAGCTGGAGGAAAAGGACTCTCTTGTCTCCCAGCTAACCAGAAGCAAGATGTCTTACACTCAGCAAATTGAAGATCTTAAAAGACAACTGGAGGAGGAAACAAAGGCAAAAAGCGCTCTCGCCCATGCTGTACAGTCAGCCCGTCATGACACAGATCTGCTTAGAGAGCAGTATGAGGAGGAGCAGGAAGCTAAAGCAGAGCTACAGCGAGGCATGTCCAAAGCTAATTCTGAGGTGGCACAGTGGAGAACCAAGTACGAAACTGATGCCATCCAGAGAACTGAAGAACTGGAGGAAGCCAAAAAGAAACTGGCTCAACGCTTACAGGAAACCGAAGAAGCTGTTGAAGCAGTAAATGCAAAGTGTTCATCTCTTGAAAAGACCAAAcacagactccaaaatgagattgAAGATCTTATGGTGGACCTGGAGAGGTCTAATGCGGCTGCTGCAGCCTTAGACAAAAAGCAAAGAAACTTTGATAAGGTACTGTCTGAGTGGAAGCAGAAGTTTGAAGAGTCGCAAGCCGAGTTAGAGAGCTCTCAGAAAGAAGCAAGATGTCTTAGCACTGAACTTTTCAAGCTGAAGAACTCCTATGAGGAAGCTTTAGATCACCTGGAGACCAtgaagagagaaaataaaaatctcCAAGAGGAGATTTCTGATCTCACCGAGCAACTTGGTGAGGGAGGAAAGAGCATCCATGAGCTGGAGAAAATGAGGAAACAGTTGGAGCAAGAAAAAAGTGAGATTCAATCTGCTCTGGAAGAGGCAGAGGCATCACTGGAGCACGAGGAGGGTAAGATTCTGCGAGCCCAGCTGGAGTTCAGCCAAATTAAGGCTGATATCGAGCGCAAACTAGCCGAGAAGGATGAAGAGATGGAGCAGAGCAAACGCAATTTGCAGAGGACCATTGACACTCTGCAAAGCTCCTTGGAGTCAGAAACCAGAAGCAGAAATGAGGCCCTCAGAATAAAAAAGAAGATGGAGGGCGACCTGAATGAGATGGAGATCCAGCTTAGTCAGGCAAACCGACAAGCAGCAGAGGCCCAAAAACAACTTAAGAGTGTGCATGCACATATGAAAGATGCTCAGCTTCAGCTGGACGACTCCCTGAGAACAAATGAAGATCTTAAGGAGAACACAGCCATTGTAGAGAGACGCAACAACCTTCTGCAGGCTGAACTAGAGGAACTCAGAGCAGCTCTTGAGCAAACCGAAAGAGGCCGTAAGCTTGCTGAGCAGGAGCTTCTGGATACCAGTGAAAGAGTACAGCTGCTGCACTCCCAGAACACAAGCCTGTTAAATCAGAAGAAGAAGCTGGAGACGGATATATCCCAGCTTCAGACAGAAGTGGAAGAGGCAGTGCAAGAATGCAGGAATGCTGAGGAAAAAGCCAAGAAGGCCATCACTGATGCTGCCATGATGGCGGAGGAGCTGAAGAAGGAGCAGGATACAAGTGCTCACCTGGAGAGGATGAAGAAGAACATGGAGCAGACCATTAAAGACCTGCAGCATCGCCTGGATGAAGCAGAACAAATCGCTATGAAGGGAGGCAAGAAACAAGTCCAGAAACTGGAGGCCAGGGTGAGGGAGCTGGAGAGTGAAGTTGAATCAGAACAGAAGAAGAGCAGTGAGGCGGTGAAAGGAATCCGCAAATATGAGAGACGTATAAAAGAACTGACGTATCAGACTGAGGAGGACCGCAAGAATCTGGCTCGTCTGCAAGATCTGGTTGACAAGCTTCAGCTAAAGGTTAAAGCTTACAAGAGGGCTGCAGAGGAAGCTGAGGAACAAGCCAACACTAATCTTAGCAAGTTCCGGAAAATCCAGCATGAGCTTGATGAGGCAGAAGAAAGAGCTGACATTGCAGAGTCACAAGTCAATAAGCTACGTGCCAAAAGTCGTGATGTCAGTTCTAAGaagGGACATGATCAAGAGTAAAGCTCAAGTGGATTTTCTGTGTCTCCGTTATGctgaattagttttgttttcagcCTATCTTGCATTTCTTCGGTCACTTAGTAGAATAAAGTTGAATTGCATTAAA

Function

GO:

id name namespace
GO:0055005 ventricular cardiac myofibril assembly biological_process
GO:0035050 embryonic heart tube development biological_process
GO:0016459 myosin complex cellular_component
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0051015 actin filament binding molecular_function
GO:0003774 motor activity molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-991123-5 Predicted to enable ATP binding activity; actin filament binding activity; and cytoskeletal motor activity. Acts upstream of or within embryonic heart tube development and ventricular cardiac myofibril assembly. Predicted to be part of myosin complex. Is expressed in several structures, including heart primordium; heart rudiment; mesoderm; musculature system; and pericardial region. Human ortholog(s) of this gene implicated in cardiomyopathy (multiple); congenital heart disease (multiple); distal myopathy 1; heart conduction disease (multiple); and hyaline body myopathy (multiple). Orthologous to human MYH6 (myosin heavy chain 6) and MYH7 (myosin heavy chain 7).

Ensembl:

ensembl_id ENSDART00000099532

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00032235 lncRNA downstream 151045 24076013 ~ 24105475 (-) True XLOC_016370
TCONS_00033826 lncRNA downstream 226335 24026569 ~ 24030185 (-) False XLOC_016369
TCONS_00033825 lncRNA downstream 227510 24026569 ~ 24029010 (-) False XLOC_016369
TCONS_00033824 lncRNA downstream 309517 23943895 ~ 23947003 (-) True XLOC_016368
TCONS_00033368 lncRNA downstream 472481 23773078 ~ 23784039 (-) True XLOC_016366
TCONS_00032242 lncRNA upstream 5406 24275317 ~ 24276079 (-) False XLOC_016373
TCONS_00032243 lncRNA upstream 6640 24276551 ~ 24277083 (-) False XLOC_016373
TCONS_00032247 lncRNA upstream 18848 24288759 ~ 24289643 (-) True XLOC_016373
TCONS_00033827 lncRNA upstream 40724 24310635 ~ 24317191 (-) False XLOC_016374
TCONS_00033828 lncRNA upstream 40724 24310635 ~ 24317205 (-) False XLOC_016374
TCONS_00032233 mRNA downstream 187086 24031195 ~ 24069434 (-) False XLOC_016369
TCONS_00032232 mRNA downstream 187086 24031195 ~ 24069434 (-) False XLOC_016369
TCONS_00032230 mRNA downstream 187189 24027744 ~ 24069331 (-) False XLOC_016369
TCONS_00032234 mRNA downstream 187672 24067144 ~ 24068848 (-) True XLOC_016369
TCONS_00032231 mRNA downstream 194945 24031195 ~ 24061575 (-) False XLOC_016369
TCONS_00032240 mRNA upstream 4382 24274293 ~ 24289726 (-) False XLOC_016373
TCONS_00032239 mRNA upstream 4382 24274293 ~ 24289726 (-) False XLOC_016373
TCONS_00032241 mRNA upstream 4413 24274324 ~ 24289641 (-) False XLOC_016373
TCONS_00032245 mRNA upstream 16528 24286439 ~ 24289642 (-) False XLOC_016373
TCONS_00032246 mRNA upstream 17132 24287043 ~ 24289643 (-) False XLOC_016373
TCONS_00032199 other downstream 1255150 22994021 ~ 23001370 (-) False XLOC_016345
TCONS_00032186 other downstream 1359119 22897285 ~ 22897401 (-) True XLOC_016343
TCONS_00032172 other downstream 1821974 22434430 ~ 22434546 (-) True XLOC_016331
TCONS_00032140 other downstream 3498821 20757582 ~ 20757699 (-) True XLOC_016303
TCONS_00032139 other downstream 3551997 20702706 ~ 20704523 (-) True XLOC_016302
TCONS_00032244 other upstream 8928 24278839 ~ 24280795 (-) False XLOC_016373
TCONS_00032251 other upstream 41856 24311767 ~ 24317208 (-) False XLOC_016374
TCONS_00032254 other upstream 43834 24313745 ~ 24317205 (-) False XLOC_016374
TCONS_00032255 other upstream 43852 24313763 ~ 24317224 (-) False XLOC_016374
TCONS_00032260 other upstream 67962 24337873 ~ 24340856 (-) True XLOC_016375

Expression Profile

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