Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00032231 |
| length | 3495 |
| RNA type | mRNA |
| GC content | 0.47 |
| exon number | 26 |
| gene id | XLOC_016369 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007113.7 |
| NCBI id | CM002886.2 |
| chromosome length | 59640629 |
| location | 24026569 ~ 24069434 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0044085 | cellular component biogenesis | biological_process |
| GO:0016070 | RNA metabolic process | biological_process |
| GO:0016072 | rRNA metabolic process | biological_process |
| GO:0071826 | ribonucleoprotein complex subunit organization | biological_process |
| GO:0022613 | ribonucleoprotein complex biogenesis | biological_process |
| GO:0022618 | ribonucleoprotein complex assembly | biological_process |
| GO:0008152 | metabolic process | biological_process |
| GO:0034470 | ncRNA processing | biological_process |
| GO:0006364 | rRNA processing | biological_process |
| GO:0090304 | nucleic acid metabolic process | biological_process |
| GO:0006396 | RNA processing | biological_process |
| GO:0006399 | tRNA metabolic process | biological_process |
| GO:0030490 | maturation of SSU-rRNA | biological_process |
| GO:0006139 | nucleobase-containing compound metabolic process | biological_process |
| GO:0006725 | cellular aromatic compound metabolic process | biological_process |
| GO:1901360 | organic cyclic compound metabolic process | biological_process |
| GO:0010467 | gene expression | biological_process |
| GO:0044237 | cellular metabolic process | biological_process |
| GO:0044238 | primary metabolic process | biological_process |
| GO:0000460 | maturation of 5.8S rRNA | biological_process |
| GO:0042254 | ribosome biogenesis | biological_process |
| GO:0000462 | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | biological_process |
| GO:0042273 | ribosomal large subunit biogenesis | biological_process |
| GO:0042274 | ribosomal small subunit biogenesis | biological_process |
| GO:0071704 | organic substance metabolic process | biological_process |
| GO:0043170 | macromolecule metabolic process | biological_process |
| GO:0008033 | tRNA processing | biological_process |
| GO:0006807 | nitrogen compound metabolic process | biological_process |
| GO:0034641 | cellular nitrogen compound metabolic process | biological_process |
| GO:0034660 | ncRNA metabolic process | biological_process |
| GO:0046483 | heterocycle metabolic process | biological_process |
| GO:0030684 | preribosome | cellular_component |
| GO:0030686 | 90S preribosome | cellular_component |
| GO:0030687 | preribosome, large subunit precursor | cellular_component |
| GO:1990904 | ribonucleoprotein complex | cellular_component |
| GO:0044428 | obsolete nuclear part | cellular_component |
| GO:0070013 | intracellular organelle lumen | cellular_component |
| GO:0044446 | obsolete intracellular organelle part | cellular_component |
| GO:0044452 | obsolete nucleolar part | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0031974 | membrane-enclosed lumen | cellular_component |
| GO:0031981 | nuclear lumen | cellular_component |
| GO:0043227 | membrane-bounded organelle | cellular_component |
| GO:0043228 | non-membrane-bounded organelle | cellular_component |
| GO:0043231 | intracellular membrane-bounded organelle | cellular_component |
| GO:0043232 | intracellular non-membrane-bounded organelle | cellular_component |
| GO:0043233 | organelle lumen | cellular_component |
| GO:0005730 | nucleolus | cellular_component |
| GO:0003676 | nucleic acid binding | molecular_function |
| GO:0000171 | ribonuclease MRP activity | molecular_function |
| GO:0003723 | RNA binding | molecular_function |
| GO:0140098 | catalytic activity, acting on RNA | molecular_function |
| id | description |
|---|---|
| ko00230 | Purine metabolism |
| ko00240 | Pyrimidine metabolism |
| ko03020 | RNA polymerase |
| ko03230 | Viral genome structure |
| ko04623 | Cytosolic DNA-sensing pathway |
| ko05164 | Influenza A |
| ko05169 | Epstein-Barr virus infection |
| ko05016 | Huntington disease |
| ko03200 | Viral proteins |
| id | description |
|---|---|
| ZDB-GENE-070912-696 | Predicted to enable potassium:chloride symporter activity. Predicted to be involved in several processes, including cell volume homeostasis; inorganic ion homeostasis; and inorganic ion transmembrane transport. Predicted to act upstream of or within potassium ion transport and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of plasma membrane. Orthologous to human SLC12A7 (solute carrier family 12 member 7). |
| ensembl_id | ENSDART00000089234 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00033826 | lncRNA | downstream | 1010 | 24026569 ~ 24030185 (-) | False | XLOC_016369 |
| TCONS_00033825 | lncRNA | downstream | 2185 | 24026569 ~ 24029010 (-) | False | XLOC_016369 |
| TCONS_00033824 | lncRNA | downstream | 84192 | 23943895 ~ 23947003 (-) | True | XLOC_016368 |
| TCONS_00033368 | lncRNA | downstream | 247156 | 23773078 ~ 23784039 (-) | True | XLOC_016366 |
| TCONS_00033823 | lncRNA | downstream | 592610 | 23406472 ~ 23438585 (-) | False | XLOC_016351 |
| TCONS_00032235 | lncRNA | upstream | 14438 | 24076013 ~ 24105475 (-) | True | XLOC_016370 |
| TCONS_00032242 | lncRNA | upstream | 213742 | 24275317 ~ 24276079 (-) | False | XLOC_016373 |
| TCONS_00032243 | lncRNA | upstream | 214976 | 24276551 ~ 24277083 (-) | False | XLOC_016373 |
| TCONS_00032247 | lncRNA | upstream | 227184 | 24288759 ~ 24289643 (-) | True | XLOC_016373 |
| TCONS_00033827 | lncRNA | upstream | 249060 | 24310635 ~ 24317191 (-) | False | XLOC_016374 |
| TCONS_00032229 | mRNA | downstream | 9110 | 23937824 ~ 24022085 (-) | False | XLOC_016368 |
| TCONS_00032228 | mRNA | downstream | 9110 | 23937824 ~ 24022085 (-) | False | XLOC_016368 |
| TCONS_00032227 | mRNA | downstream | 17935 | 23936954 ~ 24013260 (-) | False | XLOC_016368 |
| TCONS_00032226 | mRNA | downstream | 99659 | 23856045 ~ 23931536 (-) | True | XLOC_016367 |
| TCONS_00032225 | mRNA | downstream | 253015 | 23773078 ~ 23778180 (-) | False | XLOC_016366 |
| TCONS_00032234 | mRNA | upstream | 5569 | 24067144 ~ 24068848 (-) | True | XLOC_016369 |
| TCONS_00032236 | mRNA | upstream | 191412 | 24252987 ~ 24270062 (-) | False | XLOC_016371 |
| TCONS_00032237 | mRNA | upstream | 194945 | 24256520 ~ 24269911 (-) | True | XLOC_016371 |
| TCONS_00032240 | mRNA | upstream | 212718 | 24274293 ~ 24289726 (-) | False | XLOC_016373 |
| TCONS_00032239 | mRNA | upstream | 212718 | 24274293 ~ 24289726 (-) | False | XLOC_016373 |
| TCONS_00032199 | other | downstream | 1029825 | 22994021 ~ 23001370 (-) | False | XLOC_016345 |
| TCONS_00032186 | other | downstream | 1133794 | 22897285 ~ 22897401 (-) | True | XLOC_016343 |
| TCONS_00032172 | other | downstream | 1596649 | 22434430 ~ 22434546 (-) | True | XLOC_016331 |
| TCONS_00032140 | other | downstream | 3273496 | 20757582 ~ 20757699 (-) | True | XLOC_016303 |
| TCONS_00032139 | other | downstream | 3326672 | 20702706 ~ 20704523 (-) | True | XLOC_016302 |
| TCONS_00032238 | other | upstream | 199642 | 24261217 ~ 24261296 (-) | True | XLOC_016372 |
| TCONS_00032244 | other | upstream | 217264 | 24278839 ~ 24280795 (-) | False | XLOC_016373 |
| TCONS_00032251 | other | upstream | 250192 | 24311767 ~ 24317208 (-) | False | XLOC_016374 |
| TCONS_00032254 | other | upstream | 252170 | 24313745 ~ 24317205 (-) | False | XLOC_016374 |
| TCONS_00032255 | other | upstream | 252188 | 24313763 ~ 24317224 (-) | False | XLOC_016374 |
