RNA id: TCONS_00034091


Basic Information

Item Value
RNA id TCONS_00034091
length 399
RNA type mRNA
GC content 0.53
exon number 3
gene id XLOC_017077
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 1960092 ~ 1964823 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tgTGACGACGACTGCGCCGGGCTCTTGATTCGGGACATGGAGCGTTTGCTGCGTTTGATTGGCAGTGTCAATCTCACTCTGCCCCTCCCACTGCCCTATAAAGTGCTGTATCGATTCGAGAACGTGACGGAGGAGCTGAAGCACATGCTGTCTCCTCAGAGAGCACCAGAGAGACTAATGCAGCTGGCCGACAGCAACCTGGGAAGCCTGGTCACTGAGATGGACGAACTGCTTAACCGGGCAACTAAAGTGTCTGCTGATGGGGAGCAGACGGCAGCGGATGCAGAGAGAAGCCGTAAAGCTGCAGAAGAGCTGGAACTGTACGTCAGGAACACACTGCTGGCTGCtgaaggtacacacacacaacaaatagCTAAAAACCATCATACTCAAAAATAA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000191892

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036360 lncRNA upstream 235044 1663759 ~ 1725048 (+) True XLOC_017074
TCONS_00036538 lncRNA upstream 604409 1354663 ~ 1355683 (+) True XLOC_017070
TCONS_00036537 lncRNA upstream 756218 1200292 ~ 1203874 (+) False XLOC_017065
TCONS_00036536 lncRNA upstream 756290 1200292 ~ 1203802 (+) False XLOC_017065
TCONS_00036361 lncRNA downstream 196259 2161082 ~ 2162367 (+) True XLOC_017081
TCONS_00036362 lncRNA downstream 248866 2213689 ~ 2214421 (+) True XLOC_017082
TCONS_00034099 lncRNA downstream 297110 2261933 ~ 2266612 (+) True XLOC_017084
TCONS_00036539 lncRNA downstream 316801 2281624 ~ 2284813 (+) False XLOC_017085
TCONS_00034100 lncRNA downstream 317012 2281835 ~ 2284813 (+) True XLOC_017085
TCONS_00034089 mRNA upstream 68496 1834262 ~ 1891596 (+) True XLOC_017075
TCONS_00034088 mRNA upstream 539087 1412193 ~ 1421005 (+) True XLOC_017073
TCONS_00034087 mRNA upstream 553784 1398564 ~ 1406308 (+) True XLOC_017072
TCONS_00034085 mRNA upstream 567072 1385674 ~ 1393020 (+) False XLOC_017071
TCONS_00034084 mRNA upstream 609930 1349043 ~ 1350162 (+) True XLOC_017069
TCONS_00034092 mRNA downstream 31379 1996202 ~ 2035120 (+) True XLOC_017078
TCONS_00034093 mRNA downstream 74695 2039518 ~ 2054547 (+) True XLOC_017079
TCONS_00034094 mRNA downstream 134420 2099243 ~ 2146546 (+) True XLOC_017080
TCONS_00034095 mRNA downstream 169993 2134816 ~ 2177474 (+) False XLOC_017081
TCONS_00034096 mRNA downstream 174613 2139436 ~ 2206310 (+) False XLOC_017081
TCONS_00034086 other upstream 567437 1385749 ~ 1392655 (+) True XLOC_017071
TCONS_00034041 other upstream 1641987 262995 ~ 318105 (+) False XLOC_017045
TCONS_00034116 other downstream 943728 2908551 ~ 2908665 (+) True XLOC_017093
TCONS_00034146 other downstream 3110101 5074924 ~ 5075054 (+) True XLOC_017116
TCONS_00034147 other downstream 3141745 5106568 ~ 5112043 (+) False XLOC_017117
TCONS_00034151 other downstream 3459139 5423962 ~ 5424096 (+) True XLOC_017119
TCONS_00034155 other downstream 3709207 5674030 ~ 5697001 (+) True XLOC_017120

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000135_01057682_01067405.mRNA True 1083 mRNA 0.52 6 CI01000135 1057426 ~ 1067405 (-)