RNA id: TCONS_00035164


Basic Information

Item Value
RNA id TCONS_00035164
length 1132
RNA type mRNA
GC content 0.53
exon number 3
gene id XLOC_017787
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 84692 ~ 116999 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gcacgcgcggagcTCCATACCGGATGTTGACAAACCGTTTTCGTGTGAGGCTGTCAGACAAACGGGGAGAGAAGCGAATCTGCTCGATTTCTCTGAAAACAGGCGACAGAAACGagttgCGATGGGTCGAATCTTCCTGGACCACATCGGTGGGACGCGTCTGTTCTCCTGTGCTAACTGTGACACGATTCTGACCAACCGCTCAGAGCTGATCTCCACACGCTTCACCGGCGCCACCGGCCGCGCGTTCCTCTTCAACAAGgtggtGAACCTGCAGTACAGTGAGGTGCAGGACCGCGTCATGTTGACGGGCAGACACATGGTGCGGGACGTCAGCTGTAAGAACTGCAACAGTAAGTTGGGCTGGATCTATGAGTTCGCCACCGAGGACAGCCAGCGCTACAAAGAGGGACGCGTCATCCTGGAGCGGGCGCTGGTGCGGGAGAGCGAGGGCTTCGAGGAGCACGTGCCGTCAGATgcatcctgaacacacacacaaacacacacacacacacacacacacaccagcacacTGTGAGCGGTTTCTCACACACAACCACACGCATGTAAATAAAGGCACACTCGTActtcgacacacacacacacacacacacacacacacacacacacacacacacacacacacacactgttagacACTCTGCACACTCTCAAACACTtacacagataaacagacagacacacacacacacacacacacagacagcaggacAGAGCATCAGCACACTCTGGGTGacacaaactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttcagctggtTTCCTTCATCTTCTGCTTCTGTGCTAAACTCAAACCAAACTGCAGACAACAACACtgcttcaaacacacacacacacacgcacgcacgcacacacacacacacacaaacacacacacacacacacacacacacacacacacataatgaccAGACgccagaacacacacactcagtcctgCTGTCTGCTCCGGCATGTTCCTCTGCAGTGTGATGAGGCGTGCAGTTCCTGTTGCTCCTCTGGTTCTGTAAGTCCAGCAGATCTGGAGCTCTCAGTAGATGTTCGCTGTGTTCATTTGACTCCAGCTCAATAAAAGCTTTATTCAGTG

Function

GO:

id name namespace
GO:0022402 cell cycle process biological_process
GO:0006310 DNA recombination biological_process
GO:0006335 DNA replication-dependent nucleosome assembly biological_process
GO:0034723 DNA replication-dependent nucleosome organization biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0051726 regulation of cell cycle biological_process
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0006996 organelle organization biological_process
GO:0007049 cell cycle biological_process
GO:0051276 chromosome organization biological_process
GO:0007059 chromosome segregation biological_process
GO:1903047 mitotic cell cycle process biological_process
GO:0006259 DNA metabolic process biological_process
GO:0010564 regulation of cell cycle process biological_process
GO:0006281 DNA repair biological_process
GO:0000278 mitotic cell cycle biological_process
GO:0016043 cellular component organization biological_process
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0043596 nuclear replication fork cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0044464 obsolete cell part cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005623 obsolete cell cellular_component
GO:0005657 replication fork cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0003697 single-stranded DNA binding molecular_function

KEGG:

id description
ko03050 Proteasome
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-040426-1220 Predicted to enable metal ion binding activity. Predicted to be part of ubiquitin ligase complex. Orthologous to human YPEL5 (yippee like 5).

Ensembl:

ensembl_id ENSDART00000149581

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036776 lncRNA downstream 25668 84692 ~ 88281 (-) False XLOC_017787
TCONS_00036777 lncRNA upstream 65350 182349 ~ 182781 (-) True XLOC_017790
TCONS_00036778 lncRNA upstream 286317 403316 ~ 405366 (-) True XLOC_017794
TCONS_00036779 lncRNA upstream 291562 408561 ~ 411919 (-) True XLOC_017795
TCONS_00035176 lncRNA upstream 313002 430001 ~ 432296 (-) True XLOC_017796
TCONS_00036780 lncRNA upstream 413512 530511 ~ 534076 (-) False XLOC_017799
TCONS_00035162 mRNA downstream 97076 13030 ~ 16873 (-) True XLOC_017786
TCONS_00035161 mRNA downstream 97097 9604 ~ 16852 (-) False XLOC_017786
TCONS_00035165 mRNA upstream 5124 122123 ~ 147574 (-) False XLOC_017788
TCONS_00035166 mRNA upstream 7486 124485 ~ 147578 (-) True XLOC_017788
TCONS_00035167 mRNA upstream 33891 150890 ~ 154989 (-) True XLOC_017789
TCONS_00035168 mRNA upstream 42278 159277 ~ 182841 (-) False XLOC_017790
TCONS_00035169 mRNA upstream 42306 159305 ~ 165818 (-) False XLOC_017790
TCONS_00035199 other upstream 1112789 1229788 ~ 1239603 (-) True XLOC_017810
TCONS_00035230 other upstream 2572549 2689548 ~ 2708120 (-) False XLOC_017830
TCONS_00035232 other upstream 2598950 2715949 ~ 2725519 (-) False XLOC_017831
TCONS_00035252 other upstream 3205605 3322604 ~ 3322820 (-) True XLOC_017842
TCONS_00035253 other upstream 3206567 3323566 ~ 3323782 (-) True XLOC_017843

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU141850 True 272 lncRNA 0.42 1 CI01000024 6693450 ~ 6693721 (-)
grasscarp (Ctenopharyngodon idella) CI01000135_00158065_00158568.mRNA True 1032 mRNA 0.45 2 CI01000135 157415 ~ 158568 (-)
rainbow trout (Oncorhynchus mykiss) TU793920 True 1521 TUCP 0.45 4 NC_048572.1 32214486 ~ 32217549 (-)
bowfin (Amia calva) AMCG00004056 False 2271 mRNA 0.52 3 CM030121.1 30888032 ~ 30894824 (+)
tiger barb (Puntius tetrazona) TU141850 False 1352 TUCP 0.48 3 NC_056711.1 22326710 ~ 22329260 (-)
mexican tetra (Astyanax mexicanus) TU302651 False 3378 TUCP 0.39 4 NC_035921.1 41065669 ~ 41073316 (+)