RNA id: TU757384


Basic Information

Item Value
RNA id TU757384
length 1401
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G665291
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 2881342 ~ 2884044 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atctggtactatccccaaggtctggaaggtggcccatgtactcctcctaacctgatgattatatctggtactatccccaaggtcgtgaaggaggcccatgtactccccctaacctgatgattatatctggtactatccccaaggtctggaaggaggcccatgtactccacctaacctgatgattatatctggtactatccccagggtctggaaggaggcccatgtactccacctaacctgatgattatatctggtactatccccagggtctggaaggaggcccatgtaatccacctaacctgatgattatacctggtactatccccagcgtctggaaggaggcccatgtactcctcctaacctgatgattgtatctggtactatccccagggtctggaaggaggcccatgtactcctcttaacctgatgattatatctggtactatccccagggtctggaaggaggcccatgtactccccctaacctgatgattatacctggtactatccccaaggtctggaaggtggcccatgtactcctcctaacctgatgattatatctggtactatccccaaggtctggaaggaggcccatgtactcctcctaacctgatgattatatctggtactatccccaaggtctggaaggaggcccatgtactccccctaacctgatgattatacctggtactatccccaaggtctggaaggtggcccatgtactcctcctaacctgatgattatatctggtactatccccagggtctggaaggaggcccatgtacatctcctaacctgatgattatatcttgtactatccccaaggtctggaaggtggcccatgtactcctcctaacctgatgattatacctggtattatccccaaggtctggaaggaggcccatgtactcctcctaacctgatgattatacctggtactatccccagggtctggaaggaggcccatgtactccacctaacctgatgattatacctggtactattcccagggtctggaaggtggcccatgtacatctcctaacctgatgattatatctggtactatccccaaggtctggaaggttgcccatgtactccacctaacctgatgattatatctcgtattatccccagggtctggaaggaggcccatgtactccacctaacctgatgattatacctggtactatccccaaggtctggaaggaggcccatgtacacctcctaacctgatgattatatctggtactatccccaaggtctggaaggtggcccatgtactcctcctaacctgatgattatacctggtactatccccagggtctggaaggaggcccatgtactccacctaacctgatgattatacctggtactatccccagggtctggaaggaggcccat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU757363 lncRNA downstream 20003 2846753 ~ 2861339 (-) True G665274
TU757362 lncRNA downstream 33528 2846753 ~ 2847814 (-) False G665274
TU757351 lncRNA downstream 68916 2811406 ~ 2812426 (-) True G665267
TU757341 lncRNA downstream 82068 2798706 ~ 2799274 (-) True G665257
TU757333 lncRNA downstream 82985 2797690 ~ 2798357 (-) True G665252
TU757388 lncRNA upstream 12950 2896994 ~ 2897462 (-) True G665294
TU757389 lncRNA upstream 13471 2897515 ~ 2898112 (-) True G665295
TU757391 lncRNA upstream 19571 2903615 ~ 2904548 (-) True G665297
TU757393 lncRNA upstream 20648 2904692 ~ 2904941 (-) True G665299
TU757406 lncRNA upstream 52456 2936500 ~ 2936826 (-) True G665311
XM_036984555.1 mRNA downstream 602905 2233985 ~ 2278437 (-) True LOC110529239
XM_036984548.1 mRNA downstream 680435 2110060 ~ 2200907 (-) False LOC110531067
XM_036984549.1 mRNA downstream 680435 2110060 ~ 2200907 (-) False LOC110531067
XM_036984550.1 mRNA downstream 680435 2110060 ~ 2200907 (-) True LOC110531067
XM_036984554.1 mRNA downstream 680436 2110060 ~ 2200906 (-) False LOC110531067
XM_036984571.1 mRNA upstream 62971 2947015 ~ 2957275 (-) True LOC110529255
XR_005053038.1 mRNA upstream 72580 2956624 ~ 2956701 (-) True LOC118965659
XM_036984569.1 mRNA upstream 197168 3081212 ~ 3103346 (-) False ccm2
XM_036984568.1 mRNA upstream 197168 3081212 ~ 3120444 (-) True ccm2
XM_036984577.1 mRNA upstream 829733 3713777 ~ 3823317 (-) False LOC118965483
TU756738 other downstream 530361 2291402 ~ 2350981 (-) True G664763
TU756703 other downstream 886812 1993889 ~ 1994530 (-) True G664733
TU755950 other downstream 1382771 1480175 ~ 1498571 (-) True armc1l
TU755929 other downstream 1442901 1437760 ~ 1438441 (-) True G664089
TU754888 other downstream 2451084 428191 ~ 430258 (-) True G663235
TU757795 other upstream 352844 3236888 ~ 3240052 (-) True G665603
TU757859 other upstream 456012 3340056 ~ 3340960 (-) True G665655
TU757924 other upstream 533069 3417113 ~ 3418288 (-) True G665718
TU758017 other upstream 636746 3520790 ~ 3521623 (-) True G665797
TU758186 other upstream 784188 3668232 ~ 3670147 (-) True G665927

Expression Profile