RNA id: TU757862


Basic Information

Item Value
RNA id TU757862
length 2212
lncRNA type antisense_over
GC content 0.42
exon number 3
gene id G665658
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 3347288 ~ 3349656 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aggcatcccTGGTAACTCTGGGAGCGGCCCATGGAACAGATGTCACCAGTAAAAAAAACCTGTTTCTTCCCTTTGGTGAGGCGTTATTCTGTAACTTGTACGCTAATAAACGGGatgcaagtacagggagtgaatttagtaaataaatgaacATGGAACAAAACGAGAAACGTGAGTAGTGTACAGACATGAATCATACaaccagaaacaataacgcctgaggaaagaaccaaagggagtgacagatatagtggaggtaatcaaggaggtgatggagccCAGGTAGAGTCTCGTGAGGTGCAGGTGAGCGTAACAATGGTGATAGGTGTGCATAATAATGAAAAAACTGGCGACAACgagtgccagagagggggagagggagtagaCATGACACATGATATGAAGACATTTTagctatttcagaagaacagaatagcatattctgagttgtccttatgtcagGTCCTGATCAATTGAAAAAAAGCTGAATAAAATCGAACGGATATTTtatccaaacgatttgagggagtgttgcacatgcagctattctgtgttgagaggTTAACAAAGACACAGGTATTTTGATTCTTATACATTGTAAGGTTGCATGATGCGactcgggtctttctcacaggctacaagtgaagacagacacatcggggaagcatccttatccaattccgaggcgcatattgaagatattggaagaactgtccacatttacttttcgtcagccaactaagatgagtaggcctaacgaacagcaaaaacaCTAGCctctgtcaatctactatccctcaTAGTACCAAAGTTGACCTATTGACCTCTGtgagagaaataaatattccaaacatagtcggggacagttgtgggatgtgatagatcccacattaatacaaccactagcaatgtggctgacgcaacagatagATAGAGCCCacattaatacaaccactagcaatgtggctgacgcaacagatcaaaACACTTAGCTTTCAATATTGATAAACTATTAGTCTATTTCTCCATATTATAAGTGCTGCAATGCTCACATGGCAATAGGTAGAAGTAGGTACATGGTAGAAGTaggtacatggcagtaggtagaagtaggtacatggtagaagtaggtacatggcagtaggtagaagtaggtacatggcagtaggtagaagtaggtacatgtcagtaggtacatggcagtaggtaGATGTCGTGAAATTTGTTTGATTAAGAATGGACCATTATGATTCACCTGTCTGAAACAGGGGCAGCGggaaaaaatgtgattttccctGTGGTTTAATTtccatgccagccaggtaggctatactcctgttgtaaagataagcaatgtgcttaatatcaggaaagttgagaaatacataatagtaggcctagcctatagaaagctgatggaatcctcctctttttaatagaggccatcacacTATTTtatcacgcaattgcatagcctattgaaatgttatgcaacatgagctcatgggctctcatgaagtgtttaaattagattttcaaatacatttccGTTGATGtcagagggacaatagagtggtGAGTACCAGGCAATTAGCAAGTttagtaggctactaatgaccatcagcagcatcagagcttggagaagcctaattattgaataaacggtcacgtggaatttgactgccttcataactcgtgtggtgtgtgtggtggaaaTACGGTCACCGAAACAGCCCTAGTAACACCATAATTTAGCCCGTTAGCTGGTGAGCTGATCAGACGCCAACAGAATATTTACACAGTCTGGTGAATGAACAACCTAGAACAACCTAGTCTGACGTCAACCCAGTGTGATGCAAATACAGCCAGATCGGTAGATAGACAGACCGGTCGACTTCAGTAGCACAGTAAACCACCATCCTACTTCAACACATGCCATTGTGTGCCTGTAGTCTCACCTCACAGACATCACGCCGTATTCACAACAGACCAATTGAGTAATACTCttaagtgtctcagagtaggagtgctgatataggatcaggtcccctctgtCCGTGAAATCTTGGTTGTTCACTGTGATCTAAagggcaaaactgatcctagatcagcagatGCTTGAAACTGTGTATAACGTCTGAGAGGTTATATTGTGTTGACATGTTGTGTATCACTCACCGCTGTAGAAAACGTGGCTTGGAGGCTTCCTGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU757823 lncRNA downstream 23831 3318485 ~ 3323457 (-) False G665624
TU757822 lncRNA downstream 23831 3321520 ~ 3323457 (-) False G665624
TU757824 lncRNA downstream 23831 3321520 ~ 3323457 (-) True G665624
TU757820 lncRNA downstream 88306 3258399 ~ 3258982 (-) True G665623
TU757815 lncRNA downstream 99071 3247953 ~ 3248217 (-) True G665619
TU757910 lncRNA upstream 53867 3403523 ~ 3403891 (-) True G665704
TU757927 lncRNA upstream 70989 3420645 ~ 3420858 (-) True G665721
TU757928 lncRNA upstream 73431 3423087 ~ 3423324 (-) True G665722
TU757933 lncRNA upstream 77738 3427394 ~ 3430328 (-) True G665727
TU757958 lncRNA upstream 101786 3451442 ~ 3451789 (-) True G665744
XM_036984568.1 mRNA downstream 226844 3081212 ~ 3120444 (-) True ccm2
XM_036984569.1 mRNA downstream 243942 3081212 ~ 3103346 (-) False ccm2
XM_036984571.1 mRNA downstream 390013 2947015 ~ 2957275 (-) True LOC110529255
XR_005053038.1 mRNA downstream 390587 2956624 ~ 2956701 (-) True LOC118965659
XM_036984555.1 mRNA downstream 1068851 2233985 ~ 2278437 (-) True LOC110529239
XM_036984577.1 mRNA upstream 364121 3713777 ~ 3823317 (-) False LOC118965483
XM_036984578.1 mRNA upstream 364121 3713777 ~ 3823317 (-) True LOC118965483
XM_036984580.1 mRNA upstream 530177 3879833 ~ 3959350 (-) False LOC110529264
XM_036984582.1 mRNA upstream 530177 3879833 ~ 3959350 (-) False LOC110529264
XM_036984583.1 mRNA upstream 530177 3879833 ~ 3959350 (-) True LOC110529264
TU757859 other downstream 6328 3340056 ~ 3340960 (-) True G665655
TU757795 other downstream 107236 3236888 ~ 3240052 (-) True G665603
TU756738 other downstream 996307 2291402 ~ 2350981 (-) True G664763
TU756703 other downstream 1352758 1993889 ~ 1994530 (-) True G664733
TU755950 other downstream 1848717 1480175 ~ 1498571 (-) True armc1l
TU757924 other upstream 67457 3417113 ~ 3418288 (-) True G665718
TU758017 other upstream 171134 3520790 ~ 3521623 (-) True G665797
TU758186 other upstream 318576 3668232 ~ 3670147 (-) True G665927
TU759716 other upstream 1139150 4488806 ~ 4490220 (-) True G667122
TU760267 other upstream 2199147 5548803 ~ 5551245 (-) True znf395b

Expression Profile