RNA id: TCONS_00040153


Basic Information

Item Value
RNA id TCONS_00040153
length 5975
RNA type mRNA
GC content 0.41
exon number 24
gene id XLOC_020188
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 9060699 ~ 9096248 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ccggccggccgcatatccgatcaACGTTAGACTGTGGTGGCGTAGATGCGTTAAGACCTTGCTAATTCAATTTTTTAACATATAAATTTACAGATATCGATTTAACATGGTGCATAGATTCGCAATCCATCTACAGCCAGTCGGACTTATTCTGCTGGAAACATGTTTGAGTTTGGACGTATTTTCTTCGTAATTAACAAAACTGCTGGCGAGCTCAGATTGAACTGGTGAAGGTTTACACAAGCCAGCGTTGATCTTCAGTATGTCAGAGATGGAAGGGGCCTCTCCTAAGATGAGTCTCCCAGAGAAACACCGTATGAGATCAGGTTCACATGCACCCAGCtctgtgtctatgaagagtgattGGTCAATGGAAAAACCACCAGACCTGACAAGTGAGGGGAAACCTGCATCTACCACAAGCTTtttgtctctgaagagtgactggtcgATGGAAAAACCACCAGACCTGACCTGTAAAAGAAAACTCATGTCTACCAAAAGGCTTTTATCTGAGACACAAGATTTCCAGGCTCACAAAAACCACAAGAATTTTACAGACAATCTTCAAGAGATTTTCAAGAATCTGGAAAGCCAAATAATCTCATTCCTTACCAACGagtttgaaatgtttaaaaaaatattactaagagtaaacacaaataattttgtaaaGGATTTTAATGAGAACAGATGCAGCATCagagaagcagctcttgatctcacactctacTTCCTGAGAGAAATGAAGCAAGATGAAGCTGCAGATACTCTAGAAGATGAGCTGTTCTTCATTCATCAGCTGAAATGTGGCCTACAGAAGAAGTATCagtgtgtgtttgaaggaattgcacagcaaggagactccacactccTGAAgaacatctacacagatctctatatcactcagggtggCAGTGAACAGGTCAATACTAAACATGAGGTCAGACAGATTGAAGTTACTTCTAGACACCATGAAGCTCaagagatacaggttgaatgcagACATTTGTTTGAAGCGTCTGAACAAGACAAGCAGATCAGAACTGTACTGACAAAAGGAGtcgctggcatcgggaaatcagtctctgtgcaaaagtttgttctggattgggctgaaggaaAGGAAAATCAAgagatcagcttcatatttcctcttccattcagagagatgaacttaaaggagaaagaaacaCTCAGTTTGATGGAGCTTATAACTCAGTTTTACCCAGAGAcaaaaggactgaaccttacaagaaggaatcgattcaaagtcctgttcatccttgatggattggatgaatgtcgtcttcctctgaactttgctggtaatgagacgtgttgTGATGTTTCGTCaccagtctctctggatgttctcctgacgaatctcatcaagggaaatctgcttccttctgctctcatctggatcaccagcagaccagcagctgccagtaagattcctccTGACTGTATCGACAGAGTGACAGAAGTTAGAGGATTCAATGATGAACAAAAGGTCGAGTACTTCAGAAAAAGACTCACAGATGAGAATCAGGCCAAAGAAATCATTGATCATGTTAAACAATCAAAGAGTCTCTtcatcatgtgccacatcccagtcttctgctggatttcagccactgttctccagaacttTTTACAGGAGAAGAGAAATAATGATGTGAAACACAATCAGGCTGATtccaaaacactgcaggaatCAAACACTGAAGAcactcccaagactctgacacagatgtacacacactttctgcgctttcagatccagcagagcagacgaaagtatgatggagaaaacacaccaGATGTGTCCTGGGATAAAGACgccatcctttcactggggaaactggcatTTCAGCAGCTGCTAAACAGCAACCTGATCTTCTATGACACAGACCTGGAAGCCTGTGGTATTGACGTCTATAAGGCCTCAGtttactcaggcatgtgtacccagatctttaagaaGGAAACAGGGATTgttcttggtaccatgtactgctttgtTCACTTGAGCGTTCAAGAGTTTATTGCAGCCCTTTATGCACATCTGATTCTAGACATCAACAAGAAAAGTGTGTTTGATCAAGACTCTAGAAACAGAAATGAGTCCATGATTGATTTgctgaagactgcagtggacaaggcACTTGAGAGTGACAATGGACACCTGGACCTTTTCCTTCGCTTTCTTCTTGGTCTGTCTCTCCAGTCAAATCGGCGACTCTTACGAGGTCTGTTTGCACAGCACGACCACAATAACAAATGGAACATATGGAGCATATGGAAAATATTTCAGTACTTCTTTAGAACAGCAGATCAGCAGCAAGACCACAATGACCTTAGCAAAGAGGAAATAGTTCAGTACCTCAAGCAGAAGTTTGAAGCGAATCtttctccagagagatccatcaatctgttctactgtctgaatgaactgaacgaccaaactctggTGAAAGAAATTCAGACTCGCCTTAGTAAAGGAAGTCTCTCATCTGCTGatctttcacctgcccagtggtctgctttggcctttgtgttgttgacatcagaggaggagatggaggagtttgagctccaGAAATTCAAGaaatcagacgagtgtctcatcagactatcagcagtcatcaaaacctccaaaagagctctGCTCAGTAAGTGTAATCTAACAGAGGAAAGCTGTTCAGCTCTTGCTTCAGTTCTCAGATCAGACTCCAGCAGTCTGAAGGATCTTGACCTGAGCAAtaataatctgcaggattcaggagtgaagctgctctctgatggactgaaggacAACTGTAAATTGGAGAAACTCGGACTATCAGACTGCAGTATCAGTGAAGAAGGTTATAaagctctggcttcagctctgagatcaaacccttcacacctgatagagctggatctcagaggaaatgatcctggaccatcaggAGTGAAGGAGCTCACTGATGCATTACTGGATACAAAGTGTAAAGCAAAACTGAGGTTTTTGAGTTCTGCTGCTGATGAATTCTGTCAGTTTGTGACTGGAATTATGGGTAAAAACCCGTTACTCCTGAAAGAACTGAATCTGAGTGATCGTGAACTAGGAGACACACGAGTGAATCAACTCTCTGATCTACTGCAGGACAAACACTGTCAGATCAACACACTCATgctGAAGAATAACAGGATTACAGCAGAAGGTTGTGCTGACTTGATGTCCGCATTTAATTCAAACCCTTCACACCTGACAGAGCTCAATCTGAGTGTGAATGAACTAGGAGACTTAGGAGTAGAGAAGATCTGTCCACTGCTGGAAAATACACTGTGCAGATTGGAGAAATTAAATCTGTCAGACTGCAGTATCACTGGACAAAGTTATGAAACTTTGGCTTCAGTTCTGAGATCAAACTTGTATCTAAAAGAGCTAGATCTCAGAGGAAATGATCCTGGAAAATCAGGAGTGAAAAAGTTCATTGATTTCCTGCAGGAGGGATCATGTAAATTACAGATTATCCGGTTTCTGAAGAGTCCTGATGCAGAGGAAGCATGCGAGTATCTCACTAAAGATTTGGTCATAAATCCATTATTACTGACAGAACTGGATCTAAGTAAAGTTAAATTAGGACATCTGGATGGAGAgaaattctctgcttttttgaTGGACTCGCATAATAAAGTGGAGAAAATAAAGCTGAATAACTGTAAGCTGACAGAGAAAAGCTGTTCAGTTCTAGCTGCTGTTCTCTCCTCCAAAACCATCCTGAAAGAGATGAACCTGAACAACAGTCGTCTGCTGGACTCAGGAGTCAGAAAGATCTGTGAGGGACTGAAGAATCCTGTGTGTGAGCTGAAGATACTCAAGTTATTGAGTCCAGCTGCTGATGAAGCCTGTTCGTTTGTGGCTGTACATGTGGGTGAAAACCCGTTACTCCTGAAAGAACTGAATCTGAGTAATTATGAACTAGGAGACCCACGAGTGAATCAACTCTCTGCTCTACTGCAGGATAAACACTGTAAACTCAACACACTCATGCTCAGTAATTGTGGTCTAACAGAGGAAAGCTGTTCAGCTCTTGCTTCAGTTCTCAGATCAGACTCCTGCAGTCTGAAGGATCTTGACCTGAGCAATAATAATCTGCAGAATTCAGGAGTGAAGcggctctctgatggactgaaggacAACTGTAAATTGGAGAAACTCAGACTATCAGACTGCAGTATCAGTGAAGGAGGTTATAaagctctggcttcagctctgagatcaaacctttcacacctgatagagctggatctcagaggaaatgatcctggacaatcaggaGTGAAGGAGCTCACTGACTTACTGCAGGATCCACACTGTACACTGAAGACACTGAGGTTTCTTAGTTCTGCTGTAGAGGAAGTCTGTAAACATTTGTCTGATGTTCTCACTGGGGACCCGTTAATCCTGAAAGAACTGAATCTGGGTGGATGTAAAATAGAAGACAAAGTGAGTTATCTTGCTACTCTACTGCAGGATAAACACTGTCAGATCAGCACACTGGTGCTGAACAATACCAGTATTACAGAAGAGGGTTGTGCTAATCTGACTTCAGCAATTACGTTAAACCCATCACACCTGAGGGAACTGAACCTAAGTGATAATAAACTAGGAGACTCTGCAGTGAAAAACCTCAGTGATTTACTGATAAAGACACAATTCAAGCTGGAGAAACTACATTTGAGTAATTGCAGTATTACAGAGGAACAGTGTGTGATCCtgacttcagctctgaaatcaaACCCATCACACCTGAGAGAACTGAACCTCAGTGTGAATGAAATGGGAGACTCTGCAGTGAAAAACTTAAGGGATTTTCTGATGAAGCCACAATGCAATCTGGAGAAACTACTTCTGCGTCAATGCAGTATTACAGAGAAGCAGTGTGAGATCCtgacttcagctctgaaatcaaACCCATCACACCTGAGAGAACTGGACCTCAGTAGAAATGAAATAAACAACACAGGAGTAAATCTTTTATCTGAAGTACTGAAGGAttcacactgtaaactggagagaTTGAGTCTAATTGAATGTGGCATCACAGATGTTTCCTCTTTTGCTCACAATTTGATGAACACAGAAACCCTGAAAGAGCTTGATCTTAGAAACAATTCTATATTAATTTCAAGGCGGAAACTGTTATATGTGCTATCAGACTCTAACTGTAAACTGAGCCTAGACAAGGGTAACTTGCATCAACGTTTTGCTGAATTATTTTTTGATAATCAGTGAACCCATCATCATCAGGTGCCATGGAGGATGAAGAATGGTCTGCTCAGGGCTCAGATATGTACTTTCAGCAGACATCTGGCTCTAAAGTATAAAGTCCTGATGGAAGTAATTTGCCTTTCAAAGAATATAAGTGTTAAGTGTATACCTTAAATACGTTATACTCCATGTGGCACTTCTGGTTTACATTATATCTTTCTGACATTGAATATACGAActatgtttgtttacatttaaaccaTAATAGTTGTCATGAATGAACAAATCAAATAGTCTTTAATCTTCTCATGTATTAGTTTGCTGTATTATAAATTCATCCTGTTTCAGGAcgttttattaaacttttactgAAATGAAGCTACCAAAATGACTAATTTTGTCACAGTGTGCTGTAATAATAAAAGACCACCAGACTTACAGAAAATCTTGAATTTAACATGTTTAGTGCTTTAAGTCAaaaccagaataaaaaaaaataactgacaGTTTTTATAATCTTCATCATATTGTttttgagtgatttttttttttattgtataatgtGCCATGACGCTCCTGCCCTAATTTAATTGCCCCTTGAgggattaataaagttgttaaactATAACAATGTTGTTTTCAAAATTTTTATTATAGCAAACAGTATTTTGAATATGCACTTTTAGACAGAAAGGTACAAAAGCCG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000133993

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042060 lncRNA upstream 64367 8987154 ~ 8996332 (+) True XLOC_020185
TCONS_00041881 lncRNA upstream 107147 8927365 ~ 8953552 (+) True XLOC_020184
TCONS_00041880 lncRNA upstream 166558 8886048 ~ 8894141 (+) True XLOC_020183
TCONS_00042058 lncRNA upstream 206165 8838425 ~ 8854534 (+) False XLOC_020182
TCONS_00042061 lncRNA downstream 180776 9277024 ~ 9279332 (+) True XLOC_020192
TCONS_00042062 lncRNA downstream 226509 9322757 ~ 9323817 (+) True XLOC_020194
TCONS_00041884 lncRNA downstream 245207 9341455 ~ 9343000 (+) True XLOC_020195
TCONS_00040165 lncRNA downstream 255124 9351372 ~ 9354371 (+) False XLOC_020196
TCONS_00040166 lncRNA downstream 256560 9352808 ~ 9359403 (+) True XLOC_020196
TCONS_00040147 mRNA upstream 3591 9009496 ~ 9057108 (+) False XLOC_020187
TCONS_00040152 mRNA upstream 3897 9049179 ~ 9056802 (+) True XLOC_020187
TCONS_00040151 mRNA upstream 11597 9040581 ~ 9049102 (+) False XLOC_020187
TCONS_00040150 mRNA upstream 16743 9039620 ~ 9043956 (+) False XLOC_020187
TCONS_00040149 mRNA upstream 20509 9034286 ~ 9040190 (+) False XLOC_020187
TCONS_00040156 mRNA downstream 14750 9110998 ~ 9131530 (+) False XLOC_020190
TCONS_00040157 mRNA downstream 18168 9114416 ~ 9120519 (+) False XLOC_020190
TCONS_00040158 mRNA downstream 30309 9126557 ~ 9226882 (+) False XLOC_020190
TCONS_00040159 mRNA downstream 110266 9206514 ~ 9226803 (+) True XLOC_020190
TCONS_00040160 mRNA downstream 143583 9239831 ~ 9255288 (+) True XLOC_020191
TCONS_00040142 other upstream 274406 8786167 ~ 8786293 (+) False XLOC_020180
TCONS_00040140 other upstream 291306 8766367 ~ 8769393 (+) True XLOC_020179
TCONS_00040135 other upstream 361466 8695096 ~ 8699233 (+) False XLOC_020176
TCONS_00040122 other upstream 795050 8265533 ~ 8265649 (+) True XLOC_020159
TCONS_00040110 other upstream 1616494 7443599 ~ 7444205 (+) True XLOC_020142
TCONS_00040167 other downstream 263651 9359899 ~ 9383484 (+) True XLOC_020197
TCONS_00040182 other downstream 690819 9787067 ~ 9789804 (+) True XLOC_020205
TCONS_00040207 other downstream 1062910 10159158 ~ 10164164 (+) False XLOC_020223
TCONS_00040218 other downstream 1398007 10494255 ~ 10513982 (+) True XLOC_020229
TCONS_00040220 other downstream 1457480 10553728 ~ 10558972 (+) True XLOC_020230

Expression Profile

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