RNA id: TCONS_00040163


Basic Information

Item Value
RNA id TCONS_00040163
length 1860
RNA type mRNA
GC content 0.44
exon number 2
gene id XLOC_020193
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 9286489 ~ 9315124 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGAAGCAAGATGAAGCTGCTGATACTCTAGAAGATGAGCTGATCTTCATTCATCAGCTAAAATGTGGCCTACAGAAGAAGTATCagtgtgtgtttgaaggaattgcacagcaaggagactccacactccTGAAGAACATttacacagatctctatatcactcagggtggCAGTGAACAGGTCAATACTGAACATGAGGTCAGACAGATTGAAGTTGCTTCCAGACGTCATGAAGCTCaagagatacaggttgaatgcagacatttgtttgaagcatcTGAACAAGACAAGCAGATCAGAACTGTACTGACAAAAGGAGtcgctggcatcgggaaatcagtctctgtgcaaaagtttgttctggattgggctgaaggaaaaaaaaatcgagagatcagcttcatatttcctcttccattcagagagatgaacttaaaggagaaagaaacaCTCAGTTTGATGGACcttataactcagtttttcccagagacaaaaggactgaaccttacaagaaggaatcgattcaaagtcctgttcatccttgatggattggatgaatgtcgtcttcctctgaactttgctggtaatgagacgtgttgTGACGTTTCATCACCAgcctctctggatgttctcctgacgaacctcatcaagggaaatctgcttccttctgctctcatctggatcaccagcagaccagcagctgccagtaagattcctccTGACTGTATCGagcggctgacagagatacgaggattcaatgatgcacaaaaggaggagtacttcagaaaaaGACTCACAGATGAGAATCAGGCCAAAGAAATCATTGATCATGTTAAACAATCAAAGAGTCTCTtcatcatgtgccacatcccagtcttctgctggatttcagccactgttctccagaacatttTACAGGAGAAGAGAAATAATGGTGTGAAAAACAATCAGGCTGATGACGcctccaaaacactgcagaaatcaaacactgaagacactcccaagactctgacacagatgtacacacactttctgcgctttcagatccagcagagcagacgaaagtatgatggagaaaacacaccaGATGTTTCCTGGGATAAAGATgccatcctttcactggggaaactggcatTTCATCAGCTGCTAAACAGCAACCTGATCTTCTATGACACAGACCTGGAAGCCTGTGGTATTGACGTCTATAAGGCCTCAGtttactcaggcatgtgtacccagatctttaaggaggaaaCAGGGATTGTtgttggtaccatgtactgctttgtTCACTTGAGCGTTCAAGAGTTTATTGCAGCCCTTTATGCACATCTGATTCTAGACATCAACAAGAAAAGTGTGTTTGATCAAGACTCTAAAAACAGAAATGAGTCCATGATTGATTTGCTGAGGACTGCAGTGGACAAGACACTTGAGAGTGACAATGGACACCTGGACCTTTtccttcgcttccttctcggtctgtcactccagtccaatCGCCGACTCTTACAAGGTCTGTTGACACAGCAAGAACACAAtgaccagagcaaagaggaaatagTTCAGTACATCAAGCAGAAGTTTGAGGTGAATCattctccagagagatccatcaatctgttctactgtctgaatgaactgaacgaccaaactctggTGAAAGAGATTCAGACTCACCTTAGCAAAGGAAGTCTCTCATCTGCTGATCTTTCACCTGCCCAATGGTCTGCTTTGGCCTTCGTGTTGTTGACATCAGAGGAGGAgatggaggagtttgagcttcagaaattcaagaaatcagacgagtgtctcatcagactatcagcagtcatcaaaacctgcaaaagagctctgtaa

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-246 Predicted to be involved in intracellular signal transduction.

Ensembl:

ensembl_id ENSDART00000193522

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042061 lncRNA upstream 8597 9277024 ~ 9279332 (+) True XLOC_020192
TCONS_00041883 lncRNA upstream 191819 9094008 ~ 9096110 (+) True XLOC_020188
TCONS_00041882 lncRNA upstream 221511 9066086 ~ 9066418 (+) True XLOC_020189
TCONS_00042060 lncRNA upstream 291597 8987154 ~ 8996332 (+) True XLOC_020185
TCONS_00041881 lncRNA upstream 334377 8927365 ~ 8953552 (+) True XLOC_020184
TCONS_00042062 lncRNA downstream 32889 9322757 ~ 9323817 (+) True XLOC_020194
TCONS_00041884 lncRNA downstream 51587 9341455 ~ 9343000 (+) True XLOC_020195
TCONS_00040165 lncRNA downstream 61504 9351372 ~ 9354371 (+) False XLOC_020196
TCONS_00040166 lncRNA downstream 62940 9352808 ~ 9359403 (+) True XLOC_020196
TCONS_00042063 lncRNA downstream 70031 9359899 ~ 9383484 (+) False XLOC_020197
TCONS_00040161 mRNA upstream 8771 9262800 ~ 9279158 (+) False XLOC_020192
TCONS_00040160 mRNA upstream 32641 9239831 ~ 9255288 (+) True XLOC_020191
TCONS_00040158 mRNA upstream 61047 9126557 ~ 9226882 (+) False XLOC_020190
TCONS_00040159 mRNA upstream 61126 9206514 ~ 9226803 (+) True XLOC_020190
TCONS_00040157 mRNA upstream 167410 9114416 ~ 9120519 (+) False XLOC_020190
TCONS_00040164 mRNA downstream 4468 9294336 ~ 9305780 (+) True XLOC_020193
TCONS_00040168 mRNA downstream 99933 9389801 ~ 9455759 (+) False XLOC_020198
TCONS_00040169 mRNA downstream 128634 9418502 ~ 9421177 (+) False XLOC_020198
TCONS_00040170 mRNA downstream 139842 9429710 ~ 9432225 (+) False XLOC_020198
TCONS_00040171 mRNA downstream 141985 9431853 ~ 9437021 (+) False XLOC_020198
TCONS_00040142 other upstream 501636 8786167 ~ 8786293 (+) False XLOC_020180
TCONS_00040140 other upstream 518536 8766367 ~ 8769393 (+) True XLOC_020179
TCONS_00040135 other upstream 588696 8695096 ~ 8699233 (+) False XLOC_020176
TCONS_00040122 other upstream 1022280 8265533 ~ 8265649 (+) True XLOC_020159
TCONS_00040110 other upstream 1843724 7443599 ~ 7444205 (+) True XLOC_020142
TCONS_00040167 other downstream 70031 9359899 ~ 9383484 (+) True XLOC_020197
TCONS_00040182 other downstream 497199 9787067 ~ 9789804 (+) True XLOC_020205
TCONS_00040207 other downstream 869290 10159158 ~ 10164164 (+) False XLOC_020223
TCONS_00040218 other downstream 1204387 10494255 ~ 10513982 (+) True XLOC_020229
TCONS_00040220 other downstream 1263860 10553728 ~ 10558972 (+) True XLOC_020230

Expression Profile

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