RNA id: TCONS_00042063


Basic Information

Item Value
RNA id TCONS_00042063
length 6283
lncRNA type inter_gene
GC content 0.43
exon number 28
gene id XLOC_020197
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 9359899 ~ 9383484 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GATGTTGAGAGCAAAGTAGTTGAAgaGAACACTCAATTTTTTGTGAAGGACTTTAATGAGAATAGAAACAGAGCCAaggaagcagctcttgatctcacactttACTTCTTGAGGGAAAATAAGCAAGATGAAGCTGCTGATATGCTAGAAGATGAGCTACTCTTCGTccatcagctaaaatgttgcctAAAAATTAAGTATCagtgtgtgtttgaaggaattgcaaagcaaggagactccacacttctgaagaacatctacacagatctctatatcactcagggtggTAGTAAACAGGTCAATACTGAACATGAGGTCAGGCAGATTGAATTTACTTCCAGACACCATGAAGCTCAAGAGATGCAGGTTGAATGCACGAAGATGTTTGAAGCTCCTGAACAAGAcaagcagatcagaactgtcctgacaaaaggagtcgctggcatcgggaaatcagtctctgtgcagaagtttgttctggattgggttgaaggaaaagaaaatcaagagatcagcttcatatttcctcttccattcagagagatgaacttgaAGGAGAAAGAAACCCATAGCCTGACAAGTcttttaagtcagtttttcccAGAAACAAAAGGACTGAACTTTGCAAGAAGGAatcgattcaaagtcctgttcatccttgatggattggatgaatgtcgtcttcctctgaactttgctggtaatgagatgTGTCGTGATGTTTCATCTCCAgcctctctggatgttctcctgacgaacctcatcaagggaaatctgcttccttctgctctcatctggatcaccagcagaccagcagctgccagtaagattcctccTGACTGTATCGACCAAGTGACAGAAGTTAGAGGATTCAATGATGaacaaaaggaggagtacttcagaaaacGATTTGCAGATAAGAAAATGGCCAACAAAATCATTGATCATGTTAAACAATCAAAGAGTCTCTtcatcatgtgccacatcccagtcttctgctggatttcagccactgttcttcAAAACCTTTTGGATGAGAAGAGAAATAATGGTGTTAAAAACAATCAGGCTGATGACGCctccaaaacactgcaggaatCAAACACTGAAGAcactcccaagactctgacacagatgtacacacactttctgcgCTTTCAGATCCATCAGAGCAGacgaaagtatgatggagaaaacaaaCCAGATGTTTCCTGGGATAAAGACgccatcctttcactggggaaactggcatTTCATCATCTGTCAAGAAATAACCTGATCTTCTATGACACAGACCTGGAAGCCTGTGGTATTGACGTCTATAAGGCCTCTGTTTACTctggcatgtgtacccagatctttaaggaggaaaCAGGGATTgttcttggtaccatgtactgctttgtTCACTTAAGCATTCAGGAGTATATTGCAGCCCTTTATGCACATCTGTTTCTAGACATCAACAAGAAAAGTGTGTTTGATCAAGACTCTACAGAACAGGAGAACAGAAATGAGTCTATGATTGATTTgctgaagactgcagtggacaaggcACTTGAGAGTGACAATGGACACCTGGACCTTTtccttcgcttccttctcggcTTGTCTCTCCAGTCCAATCAACGACTCTTACAAGGTCTGTTAACCCAGCATGACAAAAATGTCCAAAGTAAAGAGGAAATAGTTCAGTACATCAAGCAGAAGTTTGAAGCGAATCTTTCTctagagagatccatcaatctgttctactgtctgaatgaactgaacgaccaaactctggTGTTAGAGATTCAGACTCACCTTAGCAAAGGAAGTCTCTCATCTTCtgacctttcacctgcccagtggtctgctgtggcctttgtgttgttgacatcagaggaggagatggaggagtttgagcttcagaaattcaagaaatcagacgagtgtctcatcagactatcagcagtcatcaaaacctgcaaaaaaGCTCTGCTGAATGACTGTAACTTAACAGACAGAAGCTGTTCAGTCCTTGCTAGAGTTCTTGGATCAAATACAAGTCTAAAAGAGCTGAACATGAGCAATAAcaatctgcaggattcaggagtgaagctgctctgCACTGCACTGAAGAACGTTAAGTGTGAATTAGAAGTACTGAGAATCTCATACTGCAGTATCAGTGGAGAAGGTTATAaagctctggcttcagctctgagatcaaacccttcacacctgatagagctggatctcagaggaaatgatcctggacaatcaggaGTGAAGGAGCTCACTGAGTTACTGCAGGATCCACACTGTACACTGAAGACACTgagGTTTTTGAGTCCTGCTGCTGATGAAGCCTGTCAGTTCTTGGCTGAAGTTGTGGGTAAAAACCTGTTACTCCTGAAAGAGCTAAATCTGAGTGGACATGAACTAGGACTCTCAGACAGCTTTCAAATGCTTGTTCTTTTACTGCTTGATAAACACTGTACGCTCAACACACTGATACTTTCAGATTGCAGTATCACAGAAGAAGGTTATAaagctctggcttcagctctgagatcaaacccaTCATACATGAtagagctggatctcagaggaaaCGATCCTGGACAATTAGGAGTGAAGGAGCTCACTGACTTACTACTGGATGAATGCTGTAACTTAAAAATCATCAGGTTTCTGAAAAGTCCTGCTGCACAGGAGTCATGTGATTTTCTTACTGAAGTTCTGCATGTAAATCCATTATTACTGACAGAACTGGATCTGAGTGAGGATAAATTAGGAGATCTGGATGGAGAGAAACTCTCTGCTTTTTTGATGGACCCTCATAGCAAAGTGGAGAAAATCAAGCTTTCAGACTGCAGTATCAGTGAGGAAGGTTATAaagctctggcttcagctctgagatcaaacccttcacacctgatagagctggatctcagaggaaatgatcctggacaatcaggaGTGAAGGAGCTCACTGAGTTACTGCAGGATCCACACTCTACACTGAACACACTGAGGTTTTTGAGTCCTGCTGCTGAAGAAGCCTGTCAGTTTGTGACTGGAGTTGTGGGCAAAAATCCATTACTCCTGAAAGAACTGAATCTGAGTGATCGTCAACTAGGAAACAAAGAAATGGTTCAGCTTGCTGCTCTACTGCAGGATAAACACTGTAAACTCATTATACTTCAACTGCGTGGTTGTGGTCTAACAGAGGAAAGCTGTTCAGCTCTCGCTACTGTCTTGAAATCAAACTCCAGTCTAAAAGAGCTTGACCTGAGCAAcaataatctgcaggattcaggagtgaagaaacTCCAGAGCGGATTAGAAAATACAAACTGCACACTGGAGAAACTCAGACTGCAGTATCAAGAAGGTTATAAAGCtctggcttcagctgtgagatcaaacccttcacacctgatagagctggatctcagaggaaatgatcctggacaatcaggaGTAAAGGAGCTCACTGACTTACTACTGGATCCACGCTCTACACTAAGGACTCTCAGGTTTTTGAGCAATTTTGCAGATGAAGTCTGTCAGTTTGTGACAGGAGTTGTGGGTAAAAACCTGTTGCTCCTGAAAGAACTGAATCTGAGTGATCATGAACTCGGAGACACACGAGTGAACCAACTCTCCGCTCTACTGCAGGACAAACACTGTCAGATCCACACACTCATCCTTTGTGATTGCAGCATTACAGAGGATCAGTGTGTGATCCTGACTTCAGCCCTGAAATCAAACCCATCACACCTGAGAGAACTGAACTTTAGTTATAATCCCATAAAAAACACTGGAATCAATCTCATATGTGACGTACTGAAGGATTCACTCTGTAAACTGGAAACACTGAGtcttTCAGACTGCAGTATCAGTGAAGAAGGATATAaagctctggcttcagctctgagatcaaacccttcacacctgatagagctggatctcagaggaaatgatcctggacaatcaggaGTGAAGGAGCTCACTGAGTTACTGCAGGATCCACATTGTACATTAAAATGATCAGGTTTCTGAAAAGTCCTGCTGCACAGGAGTCGTGTGATTATCTCTCTGAAGTTCTGGGCATAAATCCATTATTACTGACAGAACTGGATCTGAGTGAAGATAAATTAGGAGATCTGGATGGAGAGAAACTCTCTGCTCTTCTAATGGACTCTCATAGCAAAGTGGAGAAAATCAAGCTGAATAATTGTGAGCTGACAGAGAAAAGCTGTTCAGTTCTAGCTACTTGTCTCTCCTCCAAAACCATCCTGAAAGAGCTAAACCTAAACAACAGTCGTCTGCTGGACTCAGGAGTCAGAGGGATCTGTGAGGGACTGAAGAATCCTGTCTGTAAGCTGAAGATACTCAATCTTTCAGACTGCAGTATCACAGAAGAAGGTTATAaagctctggcttcagctctgagatcaaacccttcacacctgatggagctggatctcagaggaaatgatcctggacaatcaggaGTGAAGGAGCTCGCTGAGTTACTGCAGCATCCACACTGTACACTGAGCACACTGAGGTTGTTGTGTCCTGCTGCTGAGGAAGGCTGTCAGTTTGTGACTGGAGTTGTGGGTAAAAACCCTTTACTTCTGAAAGAGCTGAATCTGAGTGATCATGAACTGGGAGTCACGGGAGTGAATCAACTCTCTGCTCTACTGCAGGACAAACACTGTACCATCAAAACACTTATGCTGCATAACTGTGGTCTAACAGAGGAAAGCTGTTCAGCTCTCACTACAATCCTGAGGTCAGACAGCAGTCTGAAAGAGCTTGACATGAGCAAcaataatctgcaggattcaggagtaaAGAAACTCCAGAGTGGATTAGAAAATTCCACATTGGAGAAACTCGGTCTTTCAGACTGCAGTATCAGTGAAGAAGGTTATAaagctctggcttcagctctgagatcaaacccttcacacctgatagagctggatctcagaggaaatgatcctggacaatcaggaGTGAAGGAGCTCACTGACTTACTACAGGATCCACACTGTACACTGAAAACAGTGAGGTTTTTGAGTCCTGCTGCAGATGAAGTCTGTCAGTATGTGACTCGGATTGAGGGTAAAAACCCTTTATTCCTGAAAGAACTTACTCTAAGTTTACATGAACTAGGAGACACACGAGTGAATCAGCTCACTGATCTACTGCAGGATAAACACTGTCAGATTAGCACACTCACCCTTTGGAATTGCAAAATTACAGAGGAACAGTGTGTGATCCtgacttcagctctgaaatcaaACCCATCACACCTGAGAGAACTGGAGCTCAGTgggaatgaaataaaaaacacaggAGTGAGTCACTTATGTGAATTACTGAAGGATTCACACTGTAAACTGGAAAAGTTGAGGTTAAGCTGCTGTGAGATGACAGATGAAGCTTGTTCTGCTGTAGCCTCGGCTCTGAAATCAAACCCATCACATCTGAGAGAACTGGACCTCAGTGGGAACAAACTAGAAAACTCTGGAGTGAAAAACCTCAGTGATTTACTGATGTACCCGCAATGCAAACTGGAAATACTAATCCTGTATGAATGCAGTATCACAGAGGAACAGGGTGTGATCCTGACTTCAGCATTGAAATCAAACCCATCACACCTGAGAGAACTGAACCTCAgtggaaatgaaataaaaaacataggAGTGATTCACTTATGTGAAGTATTAAAGGATTCACAGTGTAAACTGCAGACACTGAGGTTGAAAAATTGTTCTCTGACAGATGAAGGTTGTTCTGCTGtgacttcagctctgaaatcaaACCCATCACACCTGAGAGAACTGAACCTGAGTATCAATGAAATAGGAGACTCTGGAGTGAAAAACCTCAGTGATTTActgatgaacaaacaatgcaAGCTGGAAAAACTACAGTTAGTATCTCTGTACTAATAACAGAGGAACAGGGTGTGATCCtgacttcagctctgaaatcaaACCCATCACACCTGAGAGAACTGAACCTCAGTGAGAATCAAGTAAGAAACACAGGACTGAATCATCTGTGTGACGTTCTGAGGAATCCAGAATGTGAGCTGGAGATATTAAGtctgatgTTCTGTGGCATTACAGATGTCTCTACTTTAACTGTGTCTCTGATAAACGCAAATGCACTGCACTTTCTTAAAGAGCTTGATCTTACTCATAATAACATTGGAGACTCAATGGCAGAGCTCAGAAATGTGCTACGAGGCTCAAACTGTAAACTGAAGTGA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00040166 lncRNA upstream 496 9352808 ~ 9359403 (+) True XLOC_020196
TCONS_00040165 lncRNA upstream 5528 9351372 ~ 9354371 (+) False XLOC_020196
TCONS_00041884 lncRNA upstream 16899 9341455 ~ 9343000 (+) True XLOC_020195
TCONS_00042062 lncRNA upstream 36082 9322757 ~ 9323817 (+) True XLOC_020194
TCONS_00042061 lncRNA upstream 80567 9277024 ~ 9279332 (+) True XLOC_020192
TCONS_00042064 lncRNA downstream 28124 9411608 ~ 9419402 (+) False XLOC_020198
TCONS_00042065 lncRNA downstream 46392 9429876 ~ 9435984 (+) False XLOC_020198
TCONS_00042066 lncRNA downstream 54145 9437629 ~ 9451226 (+) False XLOC_020198
TCONS_00040181 lncRNA downstream 399470 9782954 ~ 9791367 (+) False XLOC_020205
TCONS_00042067 lncRNA downstream 503261 9886745 ~ 9904498 (+) True XLOC_020211
TCONS_00040162 mRNA upstream 44775 9286489 ~ 9315124 (+) False XLOC_020193
TCONS_00040164 mRNA upstream 54119 9294336 ~ 9305780 (+) True XLOC_020193
TCONS_00040163 mRNA upstream 70031 9287929 ~ 9289868 (+) False XLOC_020193
TCONS_00040161 mRNA upstream 80741 9262800 ~ 9279158 (+) False XLOC_020192
TCONS_00040160 mRNA upstream 104611 9239831 ~ 9255288 (+) True XLOC_020191
TCONS_00040168 mRNA downstream 6317 9389801 ~ 9455759 (+) False XLOC_020198
TCONS_00040169 mRNA downstream 35018 9418502 ~ 9421177 (+) False XLOC_020198
TCONS_00040170 mRNA downstream 46226 9429710 ~ 9432225 (+) False XLOC_020198
TCONS_00040171 mRNA downstream 48369 9431853 ~ 9437021 (+) False XLOC_020198
TCONS_00040172 mRNA downstream 56599 9440083 ~ 9459026 (+) True XLOC_020198
TCONS_00040142 other upstream 573606 8786167 ~ 8786293 (+) False XLOC_020180
TCONS_00040140 other upstream 590506 8766367 ~ 8769393 (+) True XLOC_020179
TCONS_00040135 other upstream 660666 8695096 ~ 8699233 (+) False XLOC_020176
TCONS_00040122 other upstream 1094250 8265533 ~ 8265649 (+) True XLOC_020159
TCONS_00040110 other upstream 1915694 7443599 ~ 7444205 (+) True XLOC_020142
TCONS_00040182 other downstream 403583 9787067 ~ 9789804 (+) True XLOC_020205
TCONS_00040207 other downstream 775674 10159158 ~ 10164164 (+) False XLOC_020223
TCONS_00040218 other downstream 1110771 10494255 ~ 10513982 (+) True XLOC_020229
TCONS_00040220 other downstream 1170244 10553728 ~ 10558972 (+) True XLOC_020230
TCONS_00040228 other downstream 1289667 10673151 ~ 10678490 (+) False XLOC_020234

Expression Profile

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