RNA id: TCONS_00042065


Basic Information

Item Value
RNA id TCONS_00042065
length 764
lncRNA type sense_over
GC content 0.43
exon number 5
gene id XLOC_020198
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 9389801 ~ 9459026 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aggaaatgatcctggacaatcaggaGTGAAGGAGCTCACTGACTTACTGCAGGATCCACACTGTACACTAAAGACACTGAGTTGTTTTAGTCCTGCTGCTGATGAAGGCTGTCAGTTTGTTACTGGAATTGTGGGTAAAAACCCGTTACTACTGAAAGAACTGAATCTGAGTGATCGTGAGCTAGGAGACACACGGGTGAATCAACTCTCTGCTCTACTGCAAGATAAACACTGTACACTCAATATACTCACGCTGAATAATAACAGGATTACAGCAGAAGGTTGTGCTGCTTTGACTTCAGCATTTAATTTAAACCCTTCACACCTGATAGAGCTCAATCTGAGTGGAAATAAACTAGGAGACTCAGGAGTAGAGAAGATCTGTCCTCTGCTGAAAAATACCCAGTGCAGATTGGAGAAATTACTTTCAAATTGTAGTATTACAGAAGAAGGTTATAaagctctggcttcagctctgagatcaaacccttcacacctgatagagctggatctcagaggaaatgatcctggacaatcTGGAGTAAAGGAGCTCACTGAGTTACTGCAGAGTTCGTGGATTCCAtggaaaaaagtgaaTCTTTCAGACTGCAGTATCAGTGGAGAAGGTTATAaagctctggcttcagctctgagatcaaacccttcacacctgatagagctggatctcagaggaaatgatcctggacaatcaggaGTGAAAGAGCTCACTGAGTTACTGCAGGATCCACACTGTACACTGAAGA

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042064 lncRNA upstream 10474 9411608 ~ 9419402 (+) False XLOC_020198
TCONS_00042063 lncRNA upstream 46392 9359899 ~ 9383484 (+) False XLOC_020197
TCONS_00040166 lncRNA upstream 70473 9352808 ~ 9359403 (+) True XLOC_020196
TCONS_00040165 lncRNA upstream 75505 9351372 ~ 9354371 (+) False XLOC_020196
TCONS_00041884 lncRNA upstream 86876 9341455 ~ 9343000 (+) True XLOC_020195
TCONS_00042066 lncRNA downstream 1645 9437629 ~ 9451226 (+) False XLOC_020198
TCONS_00040181 lncRNA downstream 346970 9782954 ~ 9791367 (+) False XLOC_020205
TCONS_00042067 lncRNA downstream 450761 9886745 ~ 9904498 (+) True XLOC_020211
TCONS_00042068 lncRNA downstream 461987 9897971 ~ 9904623 (+) True XLOC_020212
TCONS_00042069 lncRNA downstream 553921 9989905 ~ 9991494 (+) True XLOC_020216
TCONS_00040169 mRNA upstream 8699 9418502 ~ 9421177 (+) False XLOC_020198
TCONS_00040162 mRNA upstream 114752 9286489 ~ 9315124 (+) False XLOC_020193
TCONS_00040164 mRNA upstream 124096 9294336 ~ 9305780 (+) True XLOC_020193
TCONS_00040163 mRNA upstream 140008 9287929 ~ 9289868 (+) False XLOC_020193
TCONS_00040161 mRNA upstream 150718 9262800 ~ 9279158 (+) False XLOC_020192
TCONS_00040172 mRNA downstream 4099 9440083 ~ 9459026 (+) True XLOC_020198
TCONS_00040173 mRNA downstream 36830 9472814 ~ 9513061 (+) False XLOC_020199
TCONS_00040174 mRNA downstream 36836 9472820 ~ 9513061 (+) True XLOC_020199
TCONS_00040175 mRNA downstream 86987 9522971 ~ 9538071 (+) False XLOC_020200
TCONS_00040176 mRNA downstream 87511 9523495 ~ 9530774 (+) True XLOC_020200
TCONS_00040167 other upstream 46392 9359899 ~ 9383484 (+) True XLOC_020197
TCONS_00040142 other upstream 643583 8786167 ~ 8786293 (+) False XLOC_020180
TCONS_00040140 other upstream 660483 8766367 ~ 8769393 (+) True XLOC_020179
TCONS_00040135 other upstream 730643 8695096 ~ 8699233 (+) False XLOC_020176
TCONS_00040122 other upstream 1164227 8265533 ~ 8265649 (+) True XLOC_020159
TCONS_00040182 other downstream 351083 9787067 ~ 9789804 (+) True XLOC_020205
TCONS_00040207 other downstream 723174 10159158 ~ 10164164 (+) False XLOC_020223
TCONS_00040218 other downstream 1058271 10494255 ~ 10513982 (+) True XLOC_020229
TCONS_00040220 other downstream 1117744 10553728 ~ 10558972 (+) True XLOC_020230
TCONS_00040228 other downstream 1237167 10673151 ~ 10678490 (+) False XLOC_020234

Expression Profile

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