RNA id: TCONS_00040175


Basic Information

Item Value
RNA id TCONS_00040175
length 3320
RNA type mRNA
GC content 0.46
exon number 21
gene id XLOC_020200
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 9522971 ~ 9538071 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

attttaaatatttttttattgaatgcttgaaaaacattaacaacaaatgtcatcaatcaaacaacaacaatccagaagttttcagtcatttagtcCAAACATAAGTGCCAAACCCTTCATCAaaatacactaatacattttaattttagaagAAAGGGTTTACAAAACTTGCTCTTGTGAATATTAAAATTggccaacaaaaaataaggtttataagttttgtttttccttttcacATTCGTGGAAACCAAAGATAACATTCTTATATGTAAATTCAAAATCTGCCTTCACATAATGTTTTATGAAATCAAGAATATCACACCAAAATGTCATTGAATGAGGGCAATTCCAAGAAGTTTAGCCTGAATGCAAGTAACTCCGTCTGGAACATCGCGTCATTTAGCGGCTGCTTACGCCTCCATCTGTAACATCGcgagactaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatctgtaacatCGCGAGACTTGTGTCAGCGTGACGCGAGAGGCGAGCGGGAGCAGGAAGTGGAGTGTGAGATGGACGGTGTCGGTTTATGTGCtaacaacaaacagaaacaaaatcaaATGCTGCCGAATAAAATGCGAGGCGAATTTACCAGAAACCAGAGAAAAGACTCCGAGggTTTATCAGAGGCTCCTGATCTGGAGTTTGAATATTCAGATGCTGATAAATGGACAGCTGAATTATCAGAGTTGTACAGTTACACAGAGGGACCAGAGTTTCTACTCAACAGAAAATGCTTCGAAGAAGACTTTCACACTCATTTGCCCGATCAGAAGTGGACCGAGCTGGATTCGGTTCAGCGCAGAGCTCATGCCATGCGTCTGCTGGACGGACTGGAAGTGATCGGGAGAGAACGCCGCTTAAAAGTGGCTCGAGCCATCCTGTACATGGCACAAGGAACATTCGGCGAGTGTTCTTCAGAACTGGAGGTTCAGCACTGGATGAGGTATAACGTCTTCCTGCTGCTGGACGTGGGAGCATTTACTGCACTTGTGGAGCTGCTCAACATGGAGATCGATAACAGTGCAGCCTGCAGCAGCGCCGTCAGAAAACCTGCTATTTCATTGGCTGACAGCACCGACCTCAGGGTGTTGCTGAACATCATGTATCTGATGGTGGAAACCATCCAGCGTGAAGAACCCACAGACAGCCCAGAGTGGAGGACCATCAGAGAAACGTTCAAGTCTGAACTTGGTTCTCCTCTCTATAACCATGAGCCGGTCTCTGTTATGCTGTTTGGGATGGTGACCAAGTTCTGCAGTGGCCACGCGCCTCATTTCCCCATGAAGAAGGTCCTGCTGCTGCTCTGGAAGACCATCCTGTTCACTCTGGGAGGGTTCGAGCAGTTGCAGTCCTGTAAGATCTCTAGACGGGCAGCTCTGGGTCTCCCTCCTCTGCCGGAGGACAGCATTCGGGTGGTGCGAAGCATGAGAGCCGCGTCTCCACCCGCGTCCGCCTCTGACCTCATCGAACAACAACAGAGACGTGCCAGGAGGGAACACAAGGCTCTCATAAAGCAAGACAATCTGGACACATTTAATGAGAAGGATCCATATAAGGCGGATGATTCTCATGAAGATGAGGAGGAAAACGATGATAATGACAACTCTCTGGAGGCGGAGCCTTTCCCTCTGGAGCGTGATGAGGTCATGCCTCCACCCATCCCTCATCCGCCTACAGAGAGAATGTGTTTCCCTAAAGGTCTACCCTGGGCTCCTAAAGTCAGGGAGAAAGATATTGAGAGCTTCCTGGAGTCCAGCAGGAGTAAATTCATCGGTTACACGCTAGGGAATGATACAGATACTGTGGTCGGTTTGCCCAGGCCCATACACGAAAGCATCAAGACTCTCAAACAGcacaAGTACGTGTCCATCGCTGAGGTGCAGATTGCTAAAGAAGAGGAGTTTCAGAAGACACCTCTGTCCGGCGgtgaggaggagctggagctgtGCGCCACAGAGCTTCTCTATCAGGGCATTTTACCCAGTTTACCACAGTACATGATCGCTCTCCTCAAGATCTTGTTGGCTGCAGCTCCTACATCCAAAGCCAAGACTGACTCCATCAACATCCTGGCCGATGTTCTGCCTGAGGAAATGCCCACTACGGTTCTTCAGAGTATGAAGTTGGGTGTAGATGTGAATCGCCATAAAGAAATCATCGTCAAAGCCATTTCAGCcattctgctgctgctgctgaaacACTTCAAACTCAACCACGTCTATCAGTTTGAGTACATGGCACAGCATCTGGTGTTTGCTAACTGTATCCCACTGATCCTCAAGTTCTTCAACCAGAACATCATGTCCTACATCACTGCTAAAAACAGTATCTCAGCTCTGGATTTCCCTCATTGTGTCATTCATGAGCTTCCAGAACTCACAGCGGAGAGTCTGGAAGCCGGTGATAATAATCAGTTCTGCTGGAGGAACTTGTTCTCCTGTATTAATCTCTTGCGCATCCTGAACAAACTCACCAAATGGAAGCACTCCAGGACCATGATGTTAGTGGTGTTCAAGTCGGCTCCTATCCTGAAGAGGGCGCTGAAGGTCAAGCAGGCCATGATGCAGCTCTATGTGCTCAAGCTGCTCAAAGTGCAGACCAAGTATCTGGGCCGCCAGTGGAGGAAGAGCAACATGAAAACCATGTCGGCCATTTACCAGAAAGTGCGTCATCGACTCAATGATGACTGGGCTTACGGAAACGATCTGGACGCTCGGCCGTGGGATTTCCAGGCGGAAGAATGTGCCCTGCGTGCAAACATCGAACGCTTCAACAGCCGCCGCTATGACAAGAACCAGAGCAACCCAGAGTTCCTCCCGGTGGACAACTGTCTGCAGAGTGTTCTGGGACAGAGGATTGACCTTCCTGAAGACTTCCAGATGAACTATGACCTCTGGCTGGAGCGCGAGGTCTTTTCCAAACCCATTTCCTGGGAGGAGCTTCTTCAGTGAAAATAACCTTCACTCCATCAACAACACTACACTTGCTAGAGTCCAGAAACAGGGACCAGTTCCTGACTGTGTAAAATAACGGCCCGTCTGTATTAAACCTGCAGTTTTACCCTTAGAGAGGAACTTCATTAGTCAGAGGTGCTAAGAGctcttttttatgtttattattatttttgctgcttttgATTATTATCTGTTCCTGAATATTAAACCTGATGATATCGTGAAAGACTGTAATTATCCTGTATGAGTGTTCTGATGTGTTTTCCATTGTATGGCTTCACATAGAAGTTTCAAATGCAATACAATCTTATTCCTATCCG

Function

GO:

id name namespace
GO:0022604 regulation of cell morphogenesis biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0030866 cortical actin cytoskeleton organization biological_process
GO:0060047 heart contraction biological_process
GO:0005829 cytosol cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2927 Acts upstream of or within heart contraction. Predicted to be located in cytoplasm. Predicted to be active in cytosol. Is expressed in cardiac ventricle. Orthologous to human STRIP1 (striatin interacting protein 1).

Ensembl:

ensembl_id ENSDART00000110048

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042066 lncRNA upstream 71745 9437629 ~ 9451226 (+) False XLOC_020198
TCONS_00042065 lncRNA upstream 86987 9429876 ~ 9435984 (+) False XLOC_020198
TCONS_00042064 lncRNA upstream 103569 9411608 ~ 9419402 (+) False XLOC_020198
TCONS_00042063 lncRNA upstream 139487 9359899 ~ 9383484 (+) False XLOC_020197
TCONS_00040166 lncRNA upstream 163568 9352808 ~ 9359403 (+) True XLOC_020196
TCONS_00040181 lncRNA downstream 244883 9782954 ~ 9791367 (+) False XLOC_020205
TCONS_00042067 lncRNA downstream 348674 9886745 ~ 9904498 (+) True XLOC_020211
TCONS_00042068 lncRNA downstream 359900 9897971 ~ 9904623 (+) True XLOC_020212
TCONS_00042069 lncRNA downstream 451834 9989905 ~ 9991494 (+) True XLOC_020216
TCONS_00042070 lncRNA downstream 480829 10018900 ~ 10049233 (+) True XLOC_020219
TCONS_00040173 mRNA upstream 9910 9472814 ~ 9513061 (+) False XLOC_020199
TCONS_00040174 mRNA upstream 9910 9472820 ~ 9513061 (+) True XLOC_020199
TCONS_00040172 mRNA upstream 63945 9440083 ~ 9459026 (+) True XLOC_020198
TCONS_00040168 mRNA upstream 67212 9389801 ~ 9455759 (+) False XLOC_020198
TCONS_00040177 mRNA downstream 213046 9751117 ~ 9755111 (+) True XLOC_020201
TCONS_00040178 mRNA downstream 223859 9761930 ~ 9763971 (+) True XLOC_020202
TCONS_00040179 mRNA downstream 226660 9764731 ~ 9768550 (+) True XLOC_020203
TCONS_00040180 mRNA downstream 234683 9772754 ~ 9775634 (+) True XLOC_020204
TCONS_00040183 mRNA downstream 255852 9793923 ~ 9795657 (+) True XLOC_020206
TCONS_00040167 other upstream 139487 9359899 ~ 9383484 (+) True XLOC_020197
TCONS_00040142 other upstream 736678 8786167 ~ 8786293 (+) False XLOC_020180
TCONS_00040140 other upstream 753578 8766367 ~ 8769393 (+) True XLOC_020179
TCONS_00040135 other upstream 823738 8695096 ~ 8699233 (+) False XLOC_020176
TCONS_00040122 other upstream 1257322 8265533 ~ 8265649 (+) True XLOC_020159
TCONS_00040182 other downstream 248996 9787067 ~ 9789804 (+) True XLOC_020205
TCONS_00040207 other downstream 621087 10159158 ~ 10164164 (+) False XLOC_020223
TCONS_00040218 other downstream 956184 10494255 ~ 10513982 (+) True XLOC_020229
TCONS_00040220 other downstream 1015657 10553728 ~ 10558972 (+) True XLOC_020230
TCONS_00040228 other downstream 1135080 10673151 ~ 10678490 (+) False XLOC_020234

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000030_08543066_08553404.mRNA True 3236 mRNA 0.48 21 CI01000030 8542785 ~ 8553914 (-)
bowfin (Amia calva) AMCG00013979 True 2451 mRNA 0.61 21 CM030125.1 48745893 ~ 48754827 (-)